Wall clock time and date at job start Tue Mar 31 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.36345 * 125.84156 * 235.64778 * 3 2 1 5 5 C 1.41434 * 107.01407 * 179.97438 * 4 3 2 6 6 C 1.47374 * 126.47217 * 179.97438 * 5 4 3 7 7 O 1.21612 * 119.99571 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99866 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00020 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47405 * 179.97438 * 9 8 6 11 11 C 1.53781 * 113.61492 * 174.99701 * 10 9 8 12 12 C 1.53781 * 87.08070 * 140.06794 * 11 10 9 13 13 N 1.46506 * 113.61361 * 89.11956 * 12 11 10 14 14 C 1.36932 * 119.99948 * 156.53166 * 13 12 11 15 15 H 1.08003 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99870 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99941 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47283 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46791 * 120.00116 * 18 16 14 21 21 H 1.48492 * 109.47273 * 240.00144 * 18 16 14 22 22 C 1.53773 * 87.17302 * 334.52628 * 12 11 10 23 23 C 1.38128 * 107.05970 * 0.26298 * 5 4 3 24 24 N 1.34432 * 108.38950 * 359.56642 * 23 5 4 25 25 H 0.96999 * 125.38970 * 180.13136 * 24 23 5 26 26 H 1.08004 * 126.49974 * 359.97438 * 4 3 2 27 27 H 0.96997 * 120.00572 * 359.97438 * 8 6 5 28 28 H 1.09002 * 109.46995 * 59.99707 * 9 8 6 29 29 H 1.08998 * 109.46746 * 299.99904 * 9 8 6 30 30 H 1.08998 * 112.84975 * 43.80400 * 10 9 8 31 31 H 1.09001 * 113.61537 * 25.52248 * 11 10 9 32 32 H 1.08998 * 113.61680 * 254.61401 * 11 10 9 33 33 H 1.09002 * 113.61408 * 219.93560 * 12 11 10 34 34 H 0.96997 * 119.99707 * 336.52824 * 13 12 11 35 35 H 0.97000 * 119.99576 * 179.97438 * 17 16 14 36 36 H 1.09007 * 113.61678 * 140.01927 * 22 12 11 37 37 H 1.09000 * 113.61916 * 270.92600 * 22 12 11 38 38 H 1.07997 * 125.80983 * 179.72055 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3662 0.6247 0.9125 5 6 4.7049 0.3672 0.5360 6 6 5.9164 0.8414 1.2285 7 8 5.8163 1.5256 2.2289 8 7 7.1349 0.5169 0.7530 9 6 8.3392 0.9878 1.4417 10 6 9.5799 0.4824 0.7028 11 6 10.9008 1.0228 1.2755 12 6 11.4838 -0.3815 1.0457 13 7 12.0747 -0.5615 -0.2828 14 6 13.0264 -1.5252 -0.4839 15 1 13.3419 -2.1523 0.3369 16 6 13.5859 -1.6960 -1.7428 17 7 13.2018 -0.9314 -2.7429 18 14 14.8848 -3.0102 -2.0171 19 1 15.1391 -3.7285 -0.7424 20 1 14.4057 -3.9736 -3.0406 21 1 16.1416 -2.3736 -2.4863 22 6 10.0455 -0.9139 1.1576 23 6 4.6627 -0.4071 -0.6070 24 7 3.3747 -0.6294 -0.9213 25 1 3.0628 -1.1475 -1.6798 26 1 3.0383 1.2056 1.7619 27 1 7.2147 -0.0292 -0.0447 28 1 8.3454 0.6080 2.4634 29 1 8.3450 2.0776 1.4591 30 1 9.4990 0.5846 -0.3794 31 1 10.8386 1.3031 2.3270 32 1 11.3618 1.7934 0.6576 33 1 12.1382 -0.7194 1.8493 34 1 11.7916 0.0020 -1.0198 35 1 13.5931 -1.0506 -3.6225 36 1 9.8163 -1.7058 0.4444 37 1 9.7498 -1.1622 2.1769 38 1 5.5188 -0.7739 -1.1538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090985912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:05 Heat of formation + Delta-G solvation = 68.189371 kcal Electronic energy + Delta-G solvation = -20995.897204 eV Core-core repulsion = 17647.187953 eV Total energy + Delta-G solvation = -3348.709250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90471 -39.44684 -38.34629 -36.86819 -34.63553 -33.23878 -31.91874 -30.57461 -29.92970 -27.34015 -25.07828 -23.98938 -23.07790 -22.91214 -21.56170 -20.48472 -19.79600 -18.30789 -17.34847 -16.67556 -16.39183 -15.71918 -15.60415 -15.06996 -14.80441 -14.58542 -14.17517 -14.10587 -13.65359 -13.47848 -13.43715 -13.10945 -12.98377 -12.95564 -12.65135 -12.27000 -11.92844 -11.39384 -11.06816 -10.89189 -10.50861 -10.23234 -10.14915 -9.83708 -9.72688 -9.60853 -9.48588 -9.01640 -8.92208 -8.77675 -7.03575 -5.85026 -3.13723 0.91881 1.49769 1.82449 2.69585 2.95844 3.17668 3.38186 3.41158 3.44702 3.46471 3.63365 4.46554 4.52176 4.53223 4.81404 5.03291 5.06480 5.19570 5.34443 5.42279 5.49761 5.61717 5.70660 5.85843 5.95838 6.03289 6.10447 6.15566 6.20701 6.35649 6.43466 6.58184 6.65206 6.72025 6.88524 6.99104 7.02067 7.56206 7.66134 8.27064 8.34444 9.45307 10.03016 10.37179 11.37474 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002630 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.131271 B =10642.126565 C =11524.588608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.280 3.720 3 C 0.040 3.960 4 C -0.047 4.047 5 C -0.222 4.222 6 C 0.585 3.415 7 O -0.546 6.546 8 N -0.721 5.721 9 C 0.132 3.868 10 C -0.119 4.119 11 C -0.147 4.147 12 C 0.166 3.834 13 N -0.706 5.706 14 C -0.240 4.240 15 H 0.073 0.927 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.168 4.168 23 C 0.087 3.913 24 N -0.519 5.519 25 H 0.427 0.573 26 H 0.161 0.839 27 H 0.399 0.601 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.211 1.362 3.745 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.035 4.035 3 C -0.071 4.071 4 C -0.076 4.076 5 C -0.232 4.232 6 C 0.372 3.628 7 O -0.424 6.424 8 N -0.372 5.372 9 C 0.009 3.991 10 C -0.138 4.138 11 C -0.187 4.187 12 C 0.054 3.946 13 N -0.345 5.345 14 C -0.371 4.371 15 H 0.091 0.909 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.209 4.209 23 C -0.056 4.056 24 N -0.113 5.113 25 H 0.266 0.734 26 H 0.178 0.822 27 H 0.233 0.767 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.951 1.631 4.347 19.512 hybrid contribution 0.915 -1.084 -1.368 1.971 sum -18.036 0.547 2.979 18.288 Atomic orbital electron populations 1.81341 1.11256 1.08753 1.06929 1.24287 0.90799 0.93913 0.94528 1.15161 0.83302 1.10339 0.98278 1.21103 0.90379 0.98107 0.97982 1.19697 0.94084 1.09386 1.00062 1.17322 0.82260 0.79588 0.83596 1.90785 1.86921 1.39015 1.25698 1.45886 1.05540 1.54579 1.31171 1.21477 0.82518 0.99041 0.96065 1.22754 0.92618 0.98400 1.00027 1.23420 0.95362 0.99539 1.00382 1.21068 0.91495 0.92462 0.89603 1.42174 1.45860 1.41244 1.05212 1.19337 1.13317 1.09817 0.94672 0.90939 1.24759 1.00509 0.99755 0.95934 1.69668 1.46174 1.41361 1.00896 0.86108 0.81320 0.81059 0.77646 1.20490 1.21882 1.21839 1.23925 1.01396 0.95577 0.99981 1.22612 0.86353 0.99245 0.97344 1.41581 1.05689 1.40460 1.23567 0.73419 0.82178 0.76656 0.91474 0.91709 0.88906 0.90394 0.91337 0.92096 0.78128 0.93513 0.91528 0.91358 0.79324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.39 18.54 41.84 0.78 -3.61 16 2 C 0.28 2.39 15.88 -22.47 -0.36 2.03 16 3 C 0.04 0.29 6.90 -83.98 -0.58 -0.29 16 4 C -0.05 -0.40 10.59 -39.05 -0.41 -0.82 16 5 C -0.22 -1.95 6.13 -105.00 -0.64 -2.60 16 6 C 0.59 6.95 7.81 -12.54 -0.10 6.85 16 7 O -0.55 -8.65 16.92 5.27 0.09 -8.56 16 8 N -0.72 -7.57 5.54 -61.40 -0.34 -7.91 16 9 C 0.13 1.60 5.52 -4.04 -0.02 1.58 16 10 C -0.12 -1.61 3.64 -89.67 -0.33 -1.93 16 11 C -0.15 -2.20 7.38 -25.92 -0.19 -2.39 16 12 C 0.17 3.05 4.55 -67.12 -0.31 2.75 16 13 N -0.71 -16.59 5.31 -52.64 -0.28 -16.87 16 14 C -0.24 -6.37 9.97 -15.06 -0.15 -6.52 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 18 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C -0.17 -2.56 7.45 -25.78 -0.19 -2.75 16 23 C 0.09 0.45 11.43 -16.45 -0.19 0.26 16 24 N -0.52 -2.31 6.02 -10.29 -0.06 -2.37 16 25 H 0.43 0.63 8.96 -40.82 -0.37 0.26 16 26 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 27 H 0.40 3.24 7.38 -40.82 -0.30 2.93 16 28 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 34 H 0.38 9.54 7.90 -40.82 -0.32 9.22 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 38 H 0.19 0.41 7.44 -52.49 -0.39 0.02 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -33.59 339.43 -7.26 -40.85 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.70 Total: 7.35 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.56 Total: -4.31 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.82 Total: -57.00 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.59 -7.26 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090985912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.043 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds