Wall clock time and date at job start Tue Mar 31 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.36345 * 125.84156 * 235.64778 * 3 2 1 5 5 C 1.41434 * 107.01407 * 179.97438 * 4 3 2 6 6 C 1.47374 * 126.47217 * 179.97438 * 5 4 3 7 7 O 1.21612 * 119.99571 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99866 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00020 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47405 * 179.97438 * 9 8 6 11 11 C 1.53781 * 113.61492 * 174.99701 * 10 9 8 12 12 C 1.53781 * 87.08070 * 140.06794 * 11 10 9 13 13 N 1.46506 * 113.61361 * 89.11956 * 12 11 10 14 14 C 1.36932 * 119.99948 * 156.53166 * 13 12 11 15 15 H 1.08003 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99870 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99941 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47283 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46791 * 120.00116 * 18 16 14 21 21 H 1.48492 * 109.47273 * 240.00144 * 18 16 14 22 22 C 1.53773 * 87.17302 * 334.52628 * 12 11 10 23 23 C 1.38128 * 107.05970 * 0.26298 * 5 4 3 24 24 N 1.34432 * 108.38950 * 359.56642 * 23 5 4 25 25 H 0.96999 * 125.38970 * 180.13136 * 24 23 5 26 26 H 1.08004 * 126.49974 * 359.97438 * 4 3 2 27 27 H 0.96997 * 120.00572 * 359.97438 * 8 6 5 28 28 H 1.09002 * 109.46995 * 59.99707 * 9 8 6 29 29 H 1.08998 * 109.46746 * 299.99904 * 9 8 6 30 30 H 1.08998 * 112.84975 * 43.80400 * 10 9 8 31 31 H 1.09001 * 113.61537 * 25.52248 * 11 10 9 32 32 H 1.08998 * 113.61680 * 254.61401 * 11 10 9 33 33 H 1.09002 * 113.61408 * 219.93560 * 12 11 10 34 34 H 0.96997 * 119.99707 * 336.52824 * 13 12 11 35 35 H 0.97000 * 119.99576 * 179.97438 * 17 16 14 36 36 H 1.09007 * 113.61678 * 140.01927 * 22 12 11 37 37 H 1.09000 * 113.61916 * 270.92600 * 22 12 11 38 38 H 1.07997 * 125.80983 * 179.72055 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3662 0.6247 0.9125 5 6 4.7049 0.3672 0.5360 6 6 5.9164 0.8414 1.2285 7 8 5.8163 1.5256 2.2289 8 7 7.1349 0.5169 0.7530 9 6 8.3392 0.9878 1.4417 10 6 9.5799 0.4824 0.7028 11 6 10.9008 1.0228 1.2755 12 6 11.4838 -0.3815 1.0457 13 7 12.0747 -0.5615 -0.2828 14 6 13.0264 -1.5252 -0.4839 15 1 13.3419 -2.1523 0.3369 16 6 13.5859 -1.6960 -1.7428 17 7 13.2018 -0.9314 -2.7429 18 14 14.8848 -3.0102 -2.0171 19 1 15.1391 -3.7285 -0.7424 20 1 14.4057 -3.9736 -3.0406 21 1 16.1416 -2.3736 -2.4863 22 6 10.0455 -0.9139 1.1576 23 6 4.6627 -0.4071 -0.6070 24 7 3.3747 -0.6294 -0.9213 25 1 3.0628 -1.1475 -1.6798 26 1 3.0383 1.2056 1.7619 27 1 7.2147 -0.0292 -0.0447 28 1 8.3454 0.6080 2.4634 29 1 8.3450 2.0776 1.4591 30 1 9.4990 0.5846 -0.3794 31 1 10.8386 1.3031 2.3270 32 1 11.3618 1.7934 0.6576 33 1 12.1382 -0.7194 1.8493 34 1 11.7916 0.0020 -1.0198 35 1 13.5931 -1.0506 -3.6225 36 1 9.8163 -1.7058 0.4444 37 1 9.7498 -1.1622 2.1769 38 1 5.5188 -0.7739 -1.1538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090985912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:04 Heat of formation + Delta-G solvation = 44.425981 kcal Electronic energy + Delta-G solvation = -20996.927662 eV Core-core repulsion = 17647.187953 eV Total energy + Delta-G solvation = -3349.739708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46897 -40.50031 -39.53215 -37.60729 -35.89976 -34.86865 -32.57971 -31.98415 -30.91322 -28.50452 -26.34894 -25.72103 -24.09306 -23.54664 -22.69536 -21.01591 -20.71229 -19.58445 -19.24029 -17.38352 -17.25900 -16.67858 -16.47704 -16.36694 -15.88264 -15.56084 -15.51448 -15.19114 -14.73938 -14.62455 -14.47347 -14.16153 -14.01606 -13.71919 -13.58907 -13.28735 -13.18330 -12.89240 -12.85622 -12.56935 -12.08029 -11.99250 -11.50181 -11.40248 -11.02659 -10.83857 -10.69322 -10.24876 -9.89457 -9.37830 -8.93812 -7.91494 -5.18602 0.36007 0.81076 1.22164 1.50724 1.51991 1.61207 2.11266 2.28564 2.35645 2.59245 2.62582 3.05919 3.41713 3.79821 3.85171 3.89825 3.97379 4.14193 4.24504 4.27156 4.41586 4.51476 4.65234 4.84566 4.91017 4.96045 5.02552 5.09707 5.20894 5.39046 5.41446 5.45364 5.57024 5.57263 5.66513 5.75571 6.24068 6.33035 6.39919 6.75608 7.38275 7.41842 8.16307 8.38573 9.31851 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002630 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.131271 B =10642.126565 C =11524.588608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.304 3.696 3 C 0.039 3.961 4 C -0.057 4.057 5 C -0.255 4.255 6 C 0.585 3.415 7 O -0.594 6.594 8 N -0.712 5.712 9 C 0.141 3.859 10 C -0.099 4.099 11 C -0.137 4.137 12 C 0.141 3.859 13 N -0.719 5.719 14 C -0.238 4.238 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.967 5.967 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.297 1.297 22 C -0.151 4.151 23 C 0.125 3.875 24 N -0.500 5.500 25 H 0.445 0.555 26 H 0.152 0.848 27 H 0.413 0.587 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.489 0.312 3.595 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.011 4.011 3 C -0.073 4.073 4 C -0.085 4.085 5 C -0.265 4.265 6 C 0.375 3.625 7 O -0.476 6.476 8 N -0.363 5.363 9 C 0.017 3.983 10 C -0.117 4.117 11 C -0.176 4.176 12 C 0.031 3.969 13 N -0.357 5.357 14 C -0.369 4.369 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.618 5.618 18 Si 0.799 3.201 19 H -0.192 1.192 20 H -0.221 1.221 21 H -0.224 1.224 22 C -0.192 4.192 23 C -0.019 4.019 24 N -0.095 5.095 25 H 0.288 0.712 26 H 0.170 0.830 27 H 0.249 0.751 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.266 0.547 4.211 19.728 hybrid contribution 1.021 -0.746 -1.250 1.779 sum -18.244 -0.199 2.960 18.484 Atomic orbital electron populations 1.81364 1.12495 1.10359 1.08442 1.24356 0.90856 0.92646 0.93234 1.14899 0.82532 1.10995 0.98873 1.21135 0.90861 0.98323 0.98225 1.19474 0.92772 1.12142 1.02087 1.17691 0.83122 0.78701 0.83005 1.90758 1.87579 1.41345 1.27949 1.45747 1.04783 1.54402 1.31402 1.21263 0.82402 0.98795 0.95820 1.22525 0.92690 0.96835 0.99694 1.23340 0.95375 0.97055 1.01841 1.21404 0.92818 0.95522 0.87153 1.42288 1.45935 1.40660 1.06844 1.19683 1.13041 1.09672 0.94554 0.90701 1.25486 1.03011 1.02167 0.96025 1.69802 1.47757 1.43243 1.01032 0.85137 0.78626 0.78700 0.77685 1.19213 1.22068 1.22434 1.23731 0.98500 0.95974 1.00947 1.23072 0.87296 0.96192 0.95367 1.41581 1.05118 1.39506 1.23316 0.71249 0.83012 0.75066 0.91629 0.92047 0.89512 0.87900 0.92458 0.92702 0.79234 0.94087 0.92846 0.89225 0.75587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.56 18.54 19.00 0.35 -9.20 16 2 C 0.30 4.89 15.88 88.33 1.40 6.30 16 3 C 0.04 0.47 6.90 39.02 0.27 0.74 16 4 C -0.06 -0.91 10.59 22.62 0.24 -0.67 16 5 C -0.26 -3.98 6.13 -20.11 -0.12 -4.11 16 6 C 0.59 13.11 7.81 86.65 0.68 13.79 16 7 O -0.59 -18.73 16.92 -4.07 -0.07 -18.80 16 8 N -0.71 -13.35 5.54 -466.44 -2.59 -15.93 16 9 C 0.14 3.12 5.52 86.38 0.48 3.60 16 10 C -0.10 -2.46 3.64 -10.18 -0.04 -2.50 16 11 C -0.14 -3.86 7.38 31.12 0.23 -3.63 16 12 C 0.14 5.02 4.55 45.51 0.21 5.23 16 13 N -0.72 -33.61 5.31 -320.45 -1.70 -35.31 16 14 C -0.24 -12.52 9.97 84.04 0.84 -11.69 16 15 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 16 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 17 N -0.97 -56.43 13.06 21.65 0.28 -56.15 16 18 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 22 C -0.15 -4.29 7.45 31.21 0.23 -4.06 16 23 C 0.13 0.84 11.43 84.27 0.96 1.80 16 24 N -0.50 -2.78 6.02 -186.47 -1.12 -3.90 16 25 H 0.45 -0.41 8.96 -92.71 -0.83 -1.24 16 26 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 27 H 0.41 5.38 7.38 -92.71 -0.68 4.70 16 28 H 0.07 1.52 7.85 -2.39 -0.02 1.50 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 34 H 0.38 18.73 7.90 -92.71 -0.73 18.00 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.09 2.20 7.91 -2.39 -0.02 2.18 16 38 H 0.23 -0.22 7.44 -2.91 -0.02 -0.25 16 Total: -1.00 -74.04 339.43 1.91 -72.14 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -1.12 Total: 19.64 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.84 Total: 1.17 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -4.78 Total: -120.50 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.07 Total: -18.80 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.04 1.91 -72.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090985912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.562 kcal (2) G-P(sol) polarization free energy of solvation -74.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds