Wall clock time and date at job start Tue Mar 31 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00145 * 2 1 4 4 H 1.48505 * 109.46715 * 264.98285 * 3 2 1 5 5 H 1.48494 * 109.47263 * 24.98088 * 3 2 1 6 6 H 1.48502 * 109.47232 * 144.98830 * 3 2 1 7 7 C 1.38811 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00490 * 189.10029 * 7 2 1 9 9 N 1.36942 * 119.99646 * 9.10367 * 7 2 1 10 10 C 1.50237 * 130.84107 * 10.15804 * 9 7 2 11 11 H 1.09007 * 115.85742 * 0.38360 * 10 9 7 12 12 C 1.55839 * 101.05094 * 233.99315 * 10 9 7 13 13 C 1.56686 * 103.60350 * 326.82771 * 12 10 9 14 14 C 1.50243 * 130.83816 * 190.18809 * 9 7 2 15 15 H 1.08995 * 115.85544 * 359.62463 * 14 9 7 16 16 C 1.55839 * 101.04787 * 233.94415 * 14 9 7 17 17 H 1.09000 * 110.62550 * 85.55488 * 16 14 9 18 18 N 1.46505 * 110.62358 * 208.40970 * 16 14 9 19 19 C 1.34767 * 120.00205 * 274.13657 * 18 16 14 20 20 O 1.21552 * 120.00222 * 359.97438 * 19 18 16 21 21 C 1.47840 * 120.00056 * 180.02562 * 19 18 16 22 22 C 1.39945 * 120.93775 * 359.72326 * 21 19 18 23 23 N 1.32148 * 118.92164 * 179.72081 * 22 21 19 24 24 C 1.31865 * 120.96606 * 0.56687 * 23 22 21 25 25 N 1.31861 * 122.09788 * 359.70119 * 24 23 22 26 26 C 1.32143 * 120.96689 * 0.02562 * 25 24 23 27 27 C 1.54845 * 103.45109 * 327.06171 * 16 14 9 28 28 H 0.97007 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.63229 * 85.55602 * 12 10 9 30 30 H 1.09008 * 110.62589 * 208.41144 * 12 10 9 31 31 H 1.08998 * 110.79466 * 242.24288 * 13 12 10 32 32 H 1.08995 * 111.26225 * 118.65218 * 13 12 10 33 33 H 0.97003 * 119.99730 * 94.14072 * 18 16 14 34 34 H 1.08000 * 120.53750 * 359.97416 * 22 21 19 35 35 H 1.08001 * 118.95210 * 179.73038 * 24 23 22 36 36 H 1.08007 * 120.54090 * 179.97438 * 26 25 24 37 37 H 1.08998 * 110.62811 * 118.49061 * 27 16 14 38 38 H 1.09005 * 110.62880 * 241.51085 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 1.3987 2.6809 0.5912 6 1 3.4908 1.4730 0.8033 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3384 -2.3807 -0.1866 10 6 -0.0789 -2.6475 -0.6075 11 1 -0.6893 -1.7668 -0.8074 12 6 -0.5652 -3.5714 0.5494 13 6 0.7204 -4.3756 0.9440 14 6 1.7916 -3.8049 -0.0336 15 1 2.8286 -3.9435 0.2722 16 6 1.4182 -4.3887 -1.4294 17 1 2.2176 -4.2073 -2.1478 18 7 1.1319 -5.8221 -1.3294 19 6 2.1373 -6.7167 -1.4012 20 8 3.2816 -6.3344 -1.5494 21 6 1.8483 -8.1631 -1.3009 22 6 0.5389 -8.6247 -1.1255 23 7 0.3253 -9.9264 -1.0464 24 6 1.3247 -10.7836 -1.1192 25 7 2.5736 -10.3918 -1.2787 26 6 2.8771 -9.1091 -1.3725 27 6 0.1441 -3.6004 -1.8204 28 1 -0.4850 0.8401 -0.0004 29 1 -0.9226 -2.9777 1.3907 30 1 -1.3454 -4.2472 0.1990 31 1 0.5763 -5.4428 0.7751 32 1 1.0041 -4.1844 1.9788 33 1 0.2187 -6.1271 -1.2116 34 1 -0.2842 -7.9285 -1.0599 35 1 1.1135 -11.8402 -1.0464 36 1 3.9025 -8.7958 -1.5026 37 1 0.3116 -3.0280 -2.7327 38 1 -0.7036 -4.2752 -1.9395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095343221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:28 Heat of formation + Delta-G solvation = 67.806844 kcal Electronic energy + Delta-G solvation = -22818.056726 eV Core-core repulsion = 19469.330888 eV Total energy + Delta-G solvation = -3348.725838 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43941 -39.93321 -38.30139 -34.50161 -33.82607 -32.68929 -32.11120 -29.31650 -29.08264 -27.76179 -25.43339 -24.80931 -24.09525 -21.65071 -21.03632 -19.63218 -18.82826 -18.25390 -17.83899 -17.42408 -16.77425 -15.61605 -15.45832 -14.97492 -14.68389 -14.43853 -14.13710 -13.96119 -13.78966 -13.71346 -12.47008 -12.37531 -11.90932 -11.79764 -11.57084 -11.22357 -11.10300 -10.96706 -10.94524 -10.85358 -10.27726 -10.12705 -10.05585 -10.01665 -9.86959 -9.63861 -9.54461 -9.32929 -8.91393 -8.64393 -6.94489 -5.80814 -3.16001 0.16268 0.69522 2.77428 3.11564 3.37721 3.43345 3.44278 3.57057 3.70659 3.82929 4.14227 4.40789 4.48205 4.73528 4.97433 5.13412 5.30230 5.39871 5.45302 5.71553 5.76531 5.85279 5.93424 5.99603 6.04185 6.17325 6.24258 6.45312 6.50157 6.50761 6.53672 6.72158 6.88166 6.92518 7.20781 7.47035 7.53661 7.64898 7.71075 8.06004 8.21460 9.03251 9.67252 10.49090 11.31705 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.037270 B = 0.003819 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.093746 B = 7329.940266 C = 7719.297850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.587 5.587 10 C 0.160 3.840 11 H 0.142 0.858 12 C -0.130 4.130 13 C -0.133 4.133 14 C 0.128 3.872 15 H 0.086 0.914 16 C 0.128 3.872 17 H 0.086 0.914 18 N -0.702 5.702 19 C 0.561 3.439 20 O -0.530 6.530 21 C -0.233 4.233 22 C 0.181 3.819 23 N -0.522 5.522 24 C 0.308 3.692 25 N -0.523 5.523 26 C 0.205 3.795 27 C -0.144 4.144 28 H 0.254 0.746 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.394 0.606 34 H 0.172 0.828 35 H 0.201 0.799 36 H 0.182 0.818 37 H 0.067 0.933 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 -17.090 -2.783 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.053 3.947 11 H 0.159 0.841 12 C -0.170 4.170 13 C -0.173 4.173 14 C 0.019 3.981 15 H 0.104 0.896 16 C 0.023 3.977 17 H 0.104 0.896 18 N -0.353 5.353 19 C 0.345 3.655 20 O -0.407 6.407 21 C -0.241 4.241 22 C 0.014 3.986 23 N -0.235 5.235 24 C 0.021 3.979 25 N -0.236 5.236 26 C 0.039 3.961 27 C -0.184 4.184 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.229 0.771 34 H 0.189 0.811 35 H 0.217 0.783 36 H 0.199 0.801 37 H 0.085 0.915 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.256 -17.415 -2.786 17.681 hybrid contribution 0.105 1.468 0.091 1.475 sum -1.151 -15.947 -2.695 16.214 Atomic orbital electron populations 1.69663 1.05021 1.25274 1.56542 1.24752 0.95613 0.97641 1.02442 0.86097 0.78605 0.83120 0.77719 1.21528 1.21714 1.20710 1.19021 0.90976 0.82123 1.42247 0.90380 1.46445 1.08635 0.98785 1.76877 1.23406 0.87772 0.94881 0.88600 0.84089 1.23296 0.95248 0.97673 1.00757 1.23227 0.97495 0.97189 0.99369 1.23165 0.96367 0.86318 0.92278 0.89619 1.22736 0.98735 0.76134 1.00141 0.89596 1.46160 1.09234 1.07537 1.72319 1.17741 0.85703 0.84406 0.77608 1.90807 1.20494 1.80183 1.49211 1.21982 0.96890 0.96961 1.08245 1.23506 0.95189 0.92562 0.87371 1.68467 1.36900 1.03314 1.14836 1.25243 0.83540 1.00818 0.88313 1.68569 1.22602 1.18022 1.14393 1.23545 1.00434 0.86832 0.85333 1.23336 0.94891 0.98664 1.01526 0.93566 0.92212 0.93820 0.93281 0.92858 0.77075 0.81136 0.78292 0.80100 0.91475 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.56 10.76 55.49 0.60 -24.96 16 2 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 16 3 Si 0.91 21.64 29.56 -169.99 -5.03 16.61 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.22 -5.83 10.55 -15.06 -0.16 -5.98 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -14.15 2.98 -145.82 -0.44 -14.58 16 10 C 0.16 3.43 4.62 -62.80 -0.29 3.14 16 11 H 0.14 3.48 5.91 -51.93 -0.31 3.17 16 12 C -0.13 -2.43 6.49 -23.23 -0.15 -2.58 16 13 C -0.13 -2.37 6.47 -23.22 -0.15 -2.52 16 14 C 0.13 2.57 5.30 -62.80 -0.33 2.23 16 15 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 16 C 0.13 2.20 3.07 -65.44 -0.20 2.00 16 17 H 0.09 1.65 7.70 -51.93 -0.40 1.25 16 18 N -0.70 -9.31 3.56 -52.34 -0.19 -9.50 16 19 C 0.56 7.83 7.78 -12.34 -0.10 7.74 16 20 O -0.53 -9.34 16.17 5.32 0.09 -9.25 16 21 C -0.23 -2.62 5.91 -104.69 -0.62 -3.24 16 22 C 0.18 1.73 10.81 -16.78 -0.18 1.55 16 23 N -0.52 -5.18 10.42 -14.25 -0.15 -5.33 16 24 C 0.31 2.78 12.27 -92.04 -1.13 1.65 16 25 N -0.52 -5.51 10.42 -14.25 -0.15 -5.66 16 26 C 0.21 2.26 10.88 -16.78 -0.18 2.08 16 27 C -0.14 -2.50 6.21 -24.24 -0.15 -2.65 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.67 7.82 -51.92 -0.41 0.26 16 31 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.39 4.09 6.16 -40.82 -0.25 3.84 16 34 H 0.17 1.18 6.54 -52.49 -0.34 0.84 16 35 H 0.20 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.18 1.85 7.75 -52.48 -0.41 1.45 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 0.80 7.35 -51.93 -0.38 0.42 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -31.12 313.47 -8.76 -39.89 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.49 Total: 4.95 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -3.74 Total: 3.10 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.32 Total: -60.02 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.12 -8.76 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095343221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.694 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds