Wall clock time and date at job start Tue Mar 31 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81400 * 103.00010 * 2 1 4 4 C 1.53004 * 109.47339 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.47071 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00144 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00107 * 179.97438 * 5 4 3 8 8 C 1.46494 * 120.00129 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46658 * 325.03028 * 8 7 5 10 10 C 1.53048 * 109.46017 * 85.00326 * 8 7 5 11 11 C 1.53191 * 109.31177 * 181.38294 * 10 8 7 12 12 N 1.46920 * 108.77677 * 305.36587 * 11 10 8 13 13 C 1.36941 * 120.62739 * 233.58675 * 12 11 10 14 14 H 1.08000 * 119.99988 * 152.79693 * 13 12 11 15 15 C 1.38810 * 120.00256 * 332.79681 * 13 12 11 16 16 N 1.31618 * 120.00033 * 159.75134 * 15 13 12 17 17 Si 1.86801 * 120.00071 * 339.75693 * 15 13 12 18 18 H 1.48499 * 109.47030 * 94.88771 * 17 15 13 19 19 H 1.48495 * 109.47249 * 214.89161 * 17 15 13 20 20 H 1.48500 * 109.47130 * 334.89138 * 17 15 13 21 21 C 1.46924 * 118.74294 * 53.60980 * 12 11 10 22 22 C 1.53041 * 109.45916 * 205.06705 * 8 7 5 23 23 H 1.08997 * 109.50282 * 298.56700 * 22 8 7 24 24 O 1.42898 * 109.49793 * 58.66671 * 22 8 7 25 25 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47224 * 299.99573 * 1 2 3 27 27 H 1.09004 * 109.47647 * 59.99940 * 1 2 3 28 28 H 1.08996 * 109.47279 * 60.00060 * 3 2 1 29 29 H 1.08999 * 109.47352 * 300.00144 * 3 2 1 30 30 H 1.08994 * 109.46911 * 60.00060 * 4 3 2 31 31 H 1.08999 * 109.46684 * 300.00146 * 4 3 2 32 32 H 0.96999 * 119.99377 * 0.02562 * 7 5 4 33 33 H 1.08994 * 109.49280 * 301.33396 * 10 8 7 34 34 H 1.08997 * 109.49655 * 61.43042 * 10 8 7 35 35 H 1.09002 * 109.58373 * 65.15675 * 11 10 8 36 36 H 1.09002 * 109.58283 * 185.57219 * 11 10 8 37 37 H 0.97005 * 120.00037 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.58422 * 66.17841 * 21 12 11 39 39 H 1.09001 * 109.58776 * 186.46449 * 21 12 11 40 40 H 0.96695 * 114.00420 * 179.97438 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0812 3.4083 0.0000 6 8 3.1942 4.2354 0.0013 7 7 5.3701 3.8025 0.0001 8 6 5.6996 5.2299 0.0002 9 1 4.9608 5.7732 -0.5889 10 6 5.6917 5.7549 1.4377 11 6 6.0026 7.2549 1.4309 12 7 7.2675 7.4725 0.7160 13 6 8.2900 8.1689 1.3033 14 1 9.3123 7.9722 1.0159 15 6 8.0125 9.1277 2.2680 16 7 8.9524 9.5083 3.1070 17 14 6.3050 9.8776 2.3755 18 1 5.5026 9.1391 3.3834 19 1 6.4147 11.3028 2.7777 20 1 5.6402 9.7869 1.0507 21 6 7.4146 6.9291 -0.6411 22 6 7.0879 5.4327 -0.6111 23 1 7.8307 4.9102 -0.0084 24 8 7.1031 4.9145 -1.9427 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8031 2.2371 0.8899 29 1 1.8031 2.2372 -0.8899 30 1 4.1608 1.4705 -0.8908 31 1 4.1615 1.4703 0.8891 32 1 6.0795 3.1409 -0.0006 33 1 4.7095 5.5889 1.8802 34 1 6.4476 5.2293 2.0211 35 1 5.2000 7.7921 0.9254 36 1 6.0958 7.6134 2.4561 37 1 8.7584 10.1780 3.7814 38 1 6.7273 7.4397 -1.3155 39 1 8.4389 7.0748 -0.9841 40 1 7.9539 5.0098 -2.3922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099653936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:28 Heat of formation + Delta-G solvation = -94.180312 kcal Electronic energy + Delta-G solvation = -21274.598462 eV Core-core repulsion = 18021.999534 eV Total energy + Delta-G solvation = -3252.598928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19457 -39.61203 -37.12907 -35.81752 -34.19331 -33.80706 -31.85784 -30.71234 -29.81589 -27.29468 -25.39380 -24.30698 -23.49941 -21.56877 -21.10294 -19.02876 -18.28968 -18.06511 -17.74644 -16.90730 -16.83567 -16.73752 -16.21000 -15.62661 -15.37513 -15.09985 -14.86826 -14.68916 -14.48105 -14.14359 -14.03686 -13.89466 -13.63452 -13.54373 -13.20451 -12.97047 -12.84744 -12.67953 -12.40458 -12.16055 -11.90152 -11.65565 -11.47203 -11.17323 -11.04453 -10.95248 -10.67211 -10.08717 -9.03144 -8.71846 -8.20482 -5.54011 0.61830 1.27282 1.39205 1.46657 1.59037 1.61317 2.20657 2.37283 2.90854 3.10880 3.34306 3.65211 3.76593 3.91118 3.94247 4.00691 4.08829 4.22625 4.30580 4.30912 4.34222 4.49167 4.56701 4.67531 4.71191 4.78917 4.84741 4.84835 4.87862 4.89263 5.01964 5.23889 5.44900 5.80215 6.08670 6.54623 6.78221 6.91096 7.24099 7.54674 7.94456 8.98546 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.027422 B = 0.003469 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.844114 B = 8068.767996 C = 8699.976277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.289 6.289 3 C -0.062 4.062 4 C -0.113 4.113 5 C 0.515 3.485 6 O -0.587 6.587 7 N -0.703 5.703 8 C 0.167 3.833 9 H 0.065 0.935 10 C -0.128 4.128 11 C 0.122 3.878 12 N -0.614 5.614 13 C -0.248 4.248 14 H 0.065 0.935 15 C -0.028 4.028 16 N -0.951 5.951 17 Si 0.935 3.065 18 H -0.278 1.278 19 H -0.309 1.309 20 H -0.265 1.265 21 C 0.119 3.881 22 C 0.100 3.900 23 H 0.072 0.928 24 O -0.568 6.568 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.416 0.584 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.263 0.737 38 H 0.032 0.968 39 H 0.078 0.922 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 -19.981 -8.223 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.063 6.063 3 C -0.210 4.210 4 C -0.154 4.154 5 C 0.302 3.698 6 O -0.467 6.467 7 N -0.354 5.354 8 C 0.061 3.939 9 H 0.083 0.917 10 C -0.169 4.169 11 C -0.003 4.003 12 N -0.340 5.340 13 C -0.377 4.377 14 H 0.083 0.917 15 C -0.223 4.223 16 N -0.597 5.597 17 Si 0.765 3.235 18 H -0.205 1.205 19 H -0.238 1.238 20 H -0.189 1.189 21 C -0.007 4.007 22 C 0.039 3.961 23 H 0.090 0.910 24 O -0.375 6.375 25 H 0.135 0.865 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.050 -20.340 -7.999 24.958 hybrid contribution -0.489 1.996 0.316 2.080 sum -12.539 -18.344 -7.683 23.510 Atomic orbital electron populations 1.23458 0.91406 1.07648 1.05736 1.86764 1.10618 1.10744 1.98190 1.22994 0.98666 0.93758 1.05631 1.21335 0.95143 0.91441 1.07473 1.21049 0.82244 0.91872 0.74661 1.90699 1.48129 1.56179 1.51724 1.45835 1.07811 1.07640 1.74105 1.20636 0.95770 0.82115 0.95330 0.91673 1.22237 1.01834 0.96337 0.96444 1.21347 0.87618 0.95067 0.96284 1.44409 1.13291 1.63078 1.13175 1.18886 0.87571 1.13484 1.17792 0.91717 1.25800 0.99971 0.98554 0.97979 1.69927 1.35520 1.34619 1.19589 0.86089 0.82118 0.76825 0.78482 1.20513 1.23780 1.18950 1.21758 1.00975 0.92579 0.85418 1.22281 0.95523 0.94273 0.84015 0.91038 1.86446 1.40744 1.83181 1.27165 0.86512 0.89870 0.89798 0.90212 0.90185 0.86017 0.86010 0.74755 0.91234 0.90725 0.95480 0.92537 0.92835 0.95016 0.90396 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.76 113.37 1.22 -0.09 16 2 S -0.29 -4.83 22.38 -56.49 -1.26 -6.10 16 3 C -0.06 -1.15 5.23 71.98 0.38 -0.77 16 4 C -0.11 -1.91 5.71 29.85 0.17 -1.74 16 5 C 0.52 13.03 7.79 87.65 0.68 13.71 16 6 O -0.59 -20.09 15.64 -3.03 -0.05 -20.14 16 7 N -0.70 -16.84 4.92 -442.41 -2.18 -19.02 16 8 C 0.17 5.15 2.12 45.02 0.10 5.25 16 9 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 10 C -0.13 -4.44 5.65 30.67 0.17 -4.27 16 11 C 0.12 5.24 4.19 86.36 0.36 5.60 16 12 N -0.61 -27.75 2.77 -699.11 -1.94 -29.69 16 13 C -0.25 -13.47 10.04 84.03 0.84 -12.63 16 14 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 15 C -0.03 -1.58 5.24 84.86 0.44 -1.13 16 16 N -0.95 -58.42 13.97 21.65 0.30 -58.12 16 17 Si 0.94 46.54 24.35 68.60 1.67 48.21 16 18 H -0.28 -13.27 6.70 99.48 0.67 -12.60 16 19 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 20 H -0.26 -12.85 6.45 99.48 0.64 -12.20 16 21 C 0.12 4.24 6.14 86.37 0.53 4.77 16 22 C 0.10 2.85 3.14 30.67 0.10 2.95 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 O -0.57 -13.41 13.16 -148.98 -1.96 -15.37 16 25 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 29 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 30 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.42 7.37 8.60 -92.71 -0.80 6.58 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 1.19 6.98 -2.39 -0.02 1.17 16 36 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 37 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 38 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 2.64 7.93 -2.39 -0.02 2.62 16 40 H 0.40 5.99 9.08 -74.06 -0.67 5.32 16 Total: -1.00 -71.22 333.98 -0.95 -72.16 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.53 Total: 16.41 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.00 Total: 11.64 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.81 Total: -106.83 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -2.01 Total: -35.50 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.67 Total: 48.21 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.26 Total: -6.10 kcal Total: -71.22 -0.95 -72.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099653936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.018 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds