Wall clock time and date at job start Tue Mar 31 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34781 * 127.83672 * 219.60536 * 5 4 2 7 7 O 1.21276 * 120.00303 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99564 * 359.97438 * 6 5 4 9 9 H 1.08992 * 115.55178 * 325.67026 * 8 6 5 10 10 C 1.53004 * 117.49412 * 180.02562 * 8 6 5 11 11 C 1.53007 * 60.00080 * 252.50983 * 10 8 6 12 12 F 1.39891 * 117.50124 * 252.51375 * 11 10 8 13 13 F 1.39904 * 117.49803 * 107.48660 * 11 10 8 14 14 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 15 15 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 16 16 H 1.09001 * 110.34452 * 359.97438 * 15 2 1 17 17 C 1.53006 * 110.34387 * 237.84933 * 15 2 1 18 18 N 1.46494 * 109.47368 * 174.99657 * 17 15 2 19 19 C 1.36940 * 119.99956 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00186 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99818 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47041 * 120.00158 * 23 21 19 26 26 H 1.48503 * 109.46946 * 239.99853 * 23 21 19 27 27 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 28 28 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 29 29 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 30 30 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 31 31 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 32 32 H 1.08997 * 117.49763 * 359.97438 * 10 8 6 33 33 H 1.08998 * 117.50068 * 145.02057 * 10 8 6 34 34 H 1.08998 * 110.41105 * 201.63246 * 14 5 4 35 35 H 1.09004 * 110.40870 * 79.19127 * 14 5 4 36 36 H 1.09004 * 109.46505 * 294.99417 * 17 15 2 37 37 H 1.08998 * 109.46960 * 54.99627 * 17 15 2 38 38 H 0.96997 * 119.99873 * 0.02562 * 18 17 15 39 39 H 0.97000 * 120.00121 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4462 -1.6624 -1.3511 7 8 5.3410 -2.2688 -0.8013 8 6 4.6504 -1.1133 -2.7397 9 1 3.7695 -1.1186 -3.3815 10 6 6.0083 -1.3546 -3.4021 11 6 5.6380 0.0438 -2.9037 12 9 5.3411 1.0150 -3.8658 13 9 6.2823 0.5111 -1.7531 14 6 2.8824 -1.9401 0.6333 15 6 2.0663 -0.7703 1.2244 16 1 1.2398 -1.1484 1.8261 17 6 2.9671 0.1335 2.0687 18 7 3.3688 -0.5767 3.2854 19 6 4.1825 0.0375 4.1997 20 1 4.5277 1.0455 4.0240 21 6 4.5635 -0.6357 5.3523 22 7 4.1432 -1.8645 5.5662 23 14 5.6729 0.2025 6.5997 24 1 6.0037 1.5709 6.1275 25 1 4.9738 0.2849 7.9073 26 1 6.9238 -0.5826 6.7559 27 1 -0.3633 0.5029 0.8962 28 1 -0.3634 0.5247 -0.8837 29 1 -0.3634 -1.0276 -0.0126 30 1 1.3271 -1.4869 -1.5790 31 1 2.3421 -0.0790 -2.0198 32 1 6.7540 -1.9100 -2.8335 33 1 6.0207 -1.5178 -4.4797 34 1 3.7692 -2.1288 1.2384 35 1 2.2675 -2.8377 0.5681 36 1 3.8541 0.4008 1.4944 37 1 2.4228 1.0383 2.3391 38 1 3.0590 -1.4823 3.4430 39 1 4.4092 -2.3347 6.3718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106089054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:45 Heat of formation + Delta-G solvation = -87.434151 kcal Electronic energy + Delta-G solvation = -23589.617474 eV Core-core repulsion = 19783.470695 eV Total energy + Delta-G solvation = -3806.146779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.88710 -47.54487 -40.19895 -38.25513 -35.65317 -34.57437 -32.83339 -31.39699 -29.17005 -26.59124 -26.14816 -24.05515 -23.01884 -22.77072 -21.15763 -19.71660 -19.37854 -18.31338 -17.34024 -16.93024 -16.58431 -16.16399 -15.88969 -15.14119 -14.74322 -14.31540 -14.19342 -13.97909 -13.80416 -13.68071 -13.46388 -13.35326 -12.98757 -12.86089 -12.71071 -12.39197 -11.95206 -11.68595 -11.50539 -11.47229 -11.07266 -10.84865 -10.62482 -10.53048 -10.43997 -10.28261 -9.93465 -9.89021 -9.62004 -8.84472 -8.66088 -6.87670 -5.71877 -3.00265 2.04165 2.67659 2.85116 3.24568 3.47676 3.53421 3.55599 3.90501 4.02144 4.32604 4.48285 4.52588 4.64531 4.81024 4.88776 5.12147 5.25009 5.30630 5.34531 5.42379 5.48415 5.52981 5.62653 5.68301 5.74151 5.93722 6.08422 6.10899 6.18166 6.20187 6.44615 6.46095 6.74829 6.90445 7.54506 7.75818 8.10121 8.46909 9.58328 10.14815 10.49585 11.51199 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.004780 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.345332 B = 5856.025629 C = 6809.509444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.084 0.916 4 C 0.102 3.898 5 N -0.612 5.612 6 C 0.560 3.440 7 O -0.519 6.519 8 C -0.190 4.190 9 H 0.147 0.853 10 C -0.142 4.142 11 C 0.222 3.778 12 F -0.157 7.157 13 F -0.145 7.145 14 C 0.110 3.890 15 C -0.104 4.104 16 H 0.090 0.910 17 C 0.162 3.838 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.291 1.291 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.383 0.617 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 1.609 -21.746 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.102 0.898 4 C -0.021 4.021 5 N -0.346 5.346 6 C 0.347 3.653 7 O -0.394 6.394 8 C -0.212 4.212 9 H 0.164 0.836 10 C -0.180 4.180 11 C 0.185 3.815 12 F -0.137 7.137 13 F -0.126 7.126 14 C -0.011 4.011 15 C -0.124 4.124 16 H 0.108 0.892 17 C 0.035 3.965 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.217 0.783 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.991 1.435 -21.401 22.023 hybrid contribution 0.380 0.437 0.775 0.967 sum -4.611 1.872 -20.627 21.219 Atomic orbital electron populations 1.21807 0.93908 1.02006 1.02052 1.22122 0.96073 1.00043 0.93920 0.89801 1.22563 0.86843 0.95507 0.97150 1.48806 1.12322 1.55286 1.18155 1.18651 0.81151 0.80268 0.85221 1.90780 1.40863 1.41356 1.66428 1.23693 0.98141 1.00708 0.98653 0.83565 1.24316 0.96873 0.93339 1.03446 1.19655 1.00043 0.81843 0.80003 1.93046 1.93390 1.65462 1.61809 1.93133 1.81557 1.90050 1.47829 1.22531 1.00617 0.96173 0.81828 1.22428 0.98624 0.95769 0.95575 0.89160 1.20686 0.94560 0.93428 0.87866 1.42352 1.59224 1.16465 1.19518 1.19252 1.21414 0.97767 0.98392 0.91245 1.24719 1.01150 0.96426 0.98621 1.69663 1.49494 1.11236 1.27833 0.86125 0.80245 0.78493 0.81406 1.20588 1.21888 1.21846 0.91829 0.92688 0.92402 0.90679 0.90674 0.84511 0.85028 0.88195 0.91317 0.96357 0.96174 0.78303 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.92 37.16 0.33 -0.95 16 2 C -0.10 -1.18 3.30 -89.22 -0.29 -1.47 16 3 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 4 C 0.10 1.05 6.37 -2.41 -0.02 1.04 16 5 N -0.61 -8.76 3.32 -169.31 -0.56 -9.32 16 6 C 0.56 8.62 7.33 -10.98 -0.08 8.54 16 7 O -0.52 -10.25 16.52 5.56 0.09 -10.15 16 8 C -0.19 -2.03 5.29 -91.76 -0.49 -2.51 16 9 H 0.15 1.06 7.65 -51.93 -0.40 0.66 16 10 C -0.14 -1.29 10.01 -26.73 -0.27 -1.56 16 11 C 0.22 2.62 5.20 -26.72 -0.14 2.48 16 12 F -0.16 -1.75 17.60 2.25 0.04 -1.71 16 13 F -0.15 -2.29 17.13 2.25 0.04 -2.25 16 14 C 0.11 1.79 6.47 -2.41 -0.02 1.77 16 15 C -0.10 -1.62 2.75 -89.22 -0.24 -1.87 16 16 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 17 C 0.16 3.34 5.37 -4.04 -0.02 3.32 16 18 N -0.73 -18.93 5.21 -59.91 -0.31 -19.24 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 23 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 31 H 0.07 0.64 7.21 -51.93 -0.37 0.27 16 32 H 0.14 1.41 7.67 -51.93 -0.40 1.02 16 33 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 2.07 7.31 -51.93 -0.38 1.70 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 10.28 7.61 -40.82 -0.31 9.97 16 39 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -34.69 334.04 -7.02 -41.71 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.57 Total: 4.64 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.48 Total: 1.26 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.15 Total: -56.68 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.69 -7.02 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106089054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.728 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds