Wall clock time and date at job start Tue Mar 31 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34781 * 127.83672 * 219.60536 * 5 4 2 7 7 O 1.21276 * 120.00303 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99564 * 359.97438 * 6 5 4 9 9 H 1.08992 * 115.55178 * 325.67026 * 8 6 5 10 10 C 1.53004 * 117.49412 * 180.02562 * 8 6 5 11 11 C 1.53007 * 60.00080 * 252.50983 * 10 8 6 12 12 F 1.39891 * 117.50124 * 252.51375 * 11 10 8 13 13 F 1.39904 * 117.49803 * 107.48660 * 11 10 8 14 14 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 15 15 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 16 16 H 1.09001 * 110.34452 * 359.97438 * 15 2 1 17 17 C 1.53006 * 110.34387 * 237.84933 * 15 2 1 18 18 N 1.46494 * 109.47368 * 174.99657 * 17 15 2 19 19 C 1.36940 * 119.99956 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00186 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99818 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47041 * 120.00158 * 23 21 19 26 26 H 1.48503 * 109.46946 * 239.99853 * 23 21 19 27 27 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 28 28 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 29 29 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 30 30 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 31 31 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 32 32 H 1.08997 * 117.49763 * 359.97438 * 10 8 6 33 33 H 1.08998 * 117.50068 * 145.02057 * 10 8 6 34 34 H 1.08998 * 110.41105 * 201.63246 * 14 5 4 35 35 H 1.09004 * 110.40870 * 79.19127 * 14 5 4 36 36 H 1.09004 * 109.46505 * 294.99417 * 17 15 2 37 37 H 1.08998 * 109.46960 * 54.99627 * 17 15 2 38 38 H 0.96997 * 119.99873 * 0.02562 * 18 17 15 39 39 H 0.97000 * 120.00121 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4462 -1.6624 -1.3511 7 8 5.3410 -2.2688 -0.8013 8 6 4.6504 -1.1133 -2.7397 9 1 3.7695 -1.1186 -3.3815 10 6 6.0083 -1.3546 -3.4021 11 6 5.6380 0.0438 -2.9037 12 9 5.3411 1.0150 -3.8658 13 9 6.2823 0.5111 -1.7531 14 6 2.8824 -1.9401 0.6333 15 6 2.0663 -0.7703 1.2244 16 1 1.2398 -1.1484 1.8261 17 6 2.9671 0.1335 2.0687 18 7 3.3688 -0.5767 3.2854 19 6 4.1825 0.0375 4.1997 20 1 4.5277 1.0455 4.0240 21 6 4.5635 -0.6357 5.3523 22 7 4.1432 -1.8645 5.5662 23 14 5.6729 0.2025 6.5997 24 1 6.0037 1.5709 6.1275 25 1 4.9738 0.2849 7.9073 26 1 6.9238 -0.5826 6.7559 27 1 -0.3633 0.5029 0.8962 28 1 -0.3634 0.5247 -0.8837 29 1 -0.3634 -1.0276 -0.0126 30 1 1.3271 -1.4869 -1.5790 31 1 2.3421 -0.0790 -2.0198 32 1 6.7540 -1.9100 -2.8335 33 1 6.0207 -1.5178 -4.4797 34 1 3.7692 -2.1288 1.2384 35 1 2.2675 -2.8377 0.5681 36 1 3.8541 0.4008 1.4944 37 1 2.4228 1.0383 2.3391 38 1 3.0590 -1.4823 3.4430 39 1 4.4092 -2.3347 6.3718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106089054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:45 Heat of formation + Delta-G solvation = -111.091259 kcal Electronic energy + Delta-G solvation = -23590.643323 eV Core-core repulsion = 19783.470695 eV Total energy + Delta-G solvation = -3807.172628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.83405 -48.52161 -41.34924 -39.43592 -36.61475 -36.47033 -34.14546 -33.12896 -30.73126 -27.86097 -27.29003 -25.63671 -24.47161 -23.62935 -22.51232 -20.91330 -20.46357 -19.40964 -19.08067 -18.13570 -17.71304 -17.13633 -17.03705 -16.70142 -16.21199 -15.74000 -15.26093 -15.21291 -15.15906 -14.99225 -14.74099 -14.63487 -14.31955 -14.00150 -13.68111 -13.43595 -13.22462 -13.00303 -12.91021 -12.81388 -12.60700 -12.35824 -12.14244 -12.00339 -11.84037 -11.52318 -11.38816 -11.37103 -11.03674 -10.99233 -9.83114 -9.05340 -8.00310 -5.29193 0.99299 1.41716 1.43980 1.53561 1.69204 1.95799 2.27576 2.51337 3.07107 3.14082 3.32895 3.44758 3.51987 3.58105 3.75792 3.81820 4.16198 4.22508 4.36465 4.41453 4.52407 4.55410 4.57556 4.64006 4.74881 4.78333 4.84741 4.91443 5.02417 5.04590 5.22118 5.27798 5.34894 5.42854 5.56126 6.22503 6.44406 6.94553 7.28638 8.03225 8.27418 9.23361 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.004780 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.345332 B = 5856.025629 C = 6809.509444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.077 0.923 4 C 0.103 3.897 5 N -0.614 5.614 6 C 0.547 3.453 7 O -0.579 6.579 8 C -0.178 4.178 9 H 0.193 0.807 10 C -0.119 4.119 11 C 0.199 3.801 12 F -0.151 7.151 13 F -0.179 7.179 14 C 0.111 3.889 15 C -0.096 4.096 16 H 0.095 0.905 17 C 0.164 3.836 18 N -0.742 5.742 19 C -0.250 4.250 20 H 0.068 0.932 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.269 1.269 25 H -0.285 1.285 26 H -0.294 1.294 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.179 0.821 34 H 0.043 0.957 35 H 0.091 0.909 36 H -0.005 1.005 37 H 0.025 0.975 38 H 0.375 0.625 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 2.307 -24.380 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.018 4.018 5 N -0.346 5.346 6 C 0.335 3.665 7 O -0.459 6.459 8 C -0.200 4.200 9 H 0.210 0.790 10 C -0.156 4.156 11 C 0.162 3.838 12 F -0.131 7.131 13 F -0.160 7.160 14 C -0.012 4.012 15 C -0.115 4.115 16 H 0.113 0.887 17 C 0.038 3.962 18 N -0.385 5.385 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.801 3.199 24 H -0.194 1.194 25 H -0.212 1.212 26 H -0.221 1.221 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.197 0.803 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.013 0.987 37 H 0.043 0.957 38 H 0.207 0.793 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.715 2.183 -24.079 25.093 hybrid contribution 0.894 0.247 1.578 1.831 sum -5.821 2.429 -22.501 23.368 Atomic orbital electron populations 1.21773 0.91341 1.03068 1.02928 1.22116 0.98039 0.99113 0.92196 0.90501 1.22892 0.85657 0.96367 0.96928 1.48972 1.13430 1.54944 1.17275 1.19545 0.80514 0.79563 0.86840 1.90748 1.42754 1.44116 1.68273 1.23773 1.00564 0.99367 0.96289 0.78977 1.24504 0.95238 0.90173 1.05697 1.20011 1.01463 0.82664 0.79657 1.93053 1.93417 1.65445 1.61210 1.93061 1.82382 1.90548 1.49976 1.22355 0.98587 0.97540 0.82711 1.22329 0.97454 0.95136 0.96627 0.88668 1.20790 0.94539 0.94391 0.86511 1.42541 1.58925 1.16352 1.20693 1.19613 1.21553 0.97865 0.99118 0.91358 1.25555 1.03003 0.97209 1.00699 1.69809 1.50920 1.12608 1.28369 0.85091 0.78010 0.77839 0.78933 1.19378 1.21182 1.22101 0.92811 0.89957 0.91308 0.87241 0.87916 0.86269 0.80324 0.93829 0.89065 0.98719 0.95727 0.79261 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.92 71.98 0.64 -1.30 16 2 C -0.09 -1.96 3.30 -9.89 -0.03 -2.00 16 3 H 0.08 1.72 7.71 -2.39 -0.02 1.70 16 4 C 0.10 1.73 6.37 86.54 0.55 2.28 16 5 N -0.61 -16.97 3.32 -807.96 -2.68 -19.65 16 6 C 0.55 16.69 7.33 87.66 0.64 17.33 16 7 O -0.58 -24.05 16.52 -3.02 -0.05 -24.10 16 8 C -0.18 -3.36 5.29 -11.53 -0.06 -3.42 16 9 H 0.19 1.75 7.65 -2.39 -0.02 1.73 16 10 C -0.12 -1.89 10.01 30.60 0.31 -1.58 16 11 C 0.20 4.41 5.20 30.60 0.16 4.57 16 12 F -0.15 -2.99 17.60 44.97 0.79 -2.20 16 13 F -0.18 -5.82 17.13 44.97 0.77 -5.05 16 14 C 0.11 3.66 6.47 86.54 0.56 4.22 16 15 C -0.10 -2.96 2.75 -9.89 -0.03 -2.99 16 16 H 0.10 2.86 7.71 -2.39 -0.02 2.84 16 17 C 0.16 7.00 5.37 86.38 0.46 7.46 16 18 N -0.74 -40.07 5.21 -343.46 -1.79 -41.86 16 19 C -0.25 -14.92 9.99 84.03 0.84 -14.08 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 22 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 23 Si 0.97 48.58 29.55 68.60 2.03 50.60 16 24 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 0.88 8.13 -2.38 -0.02 0.86 16 30 H 0.11 1.20 7.85 -2.39 -0.02 1.18 16 31 H 0.10 1.23 7.21 -2.39 -0.02 1.22 16 32 H 0.12 2.42 7.67 -2.39 -0.02 2.40 16 33 H 0.18 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.04 1.94 7.31 -2.39 -0.02 1.92 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 36 H -0.01 -0.24 8.13 -2.38 -0.02 -0.26 16 37 H 0.02 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.38 21.14 7.61 -92.71 -0.71 20.44 16 39 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -81.27 334.04 4.22 -77.05 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.36 Total: 19.79 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 4.51 Total: 6.59 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -4.18 Total: -122.67 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.56 Total: -7.25 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -81.27 4.22 -77.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106089054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.042 kcal (2) G-P(sol) polarization free energy of solvation -81.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds