Wall clock time and date at job start Tue Mar 31 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 H 1.08995 * 109.47223 * 305.00055 * 3 2 1 5 5 F 1.39904 * 109.46907 * 65.00352 * 3 2 1 6 6 C 1.50707 * 109.46910 * 184.99928 * 3 2 1 7 7 O 1.21282 * 120.00217 * 315.00370 * 6 3 2 8 8 N 1.34772 * 119.99501 * 135.00618 * 6 3 2 9 9 C 1.46502 * 119.99716 * 179.97438 * 8 6 3 10 10 C 1.53000 * 109.47269 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.55047 * 60.12739 * 10 9 8 12 12 C 1.53290 * 109.51494 * 180.25274 * 10 9 8 13 13 N 1.47232 * 108.40798 * 172.23175 * 12 10 9 14 14 C 1.36930 * 121.03328 * 129.46021 * 13 12 10 15 15 H 1.08002 * 120.00530 * 206.18598 * 14 13 12 16 16 C 1.38816 * 119.99608 * 26.18827 * 14 13 12 17 17 N 1.31615 * 120.00526 * 16.88476 * 16 14 13 18 18 Si 1.86806 * 119.99896 * 196.88547 * 16 14 13 19 19 H 1.48493 * 109.47161 * 89.99376 * 18 16 14 20 20 H 1.48497 * 109.47448 * 210.00216 * 18 16 14 21 21 H 1.48503 * 109.46954 * 330.00010 * 18 16 14 22 22 C 1.47154 * 117.98230 * 309.48797 * 13 12 10 23 23 C 1.53298 * 108.41825 * 50.51870 * 22 13 12 24 24 O 1.42959 * 109.51371 * 300.00367 * 10 9 8 25 25 H 1.09000 * 109.47311 * 300.00039 * 1 2 3 26 26 H 1.09003 * 109.47224 * 59.99860 * 1 2 3 27 27 H 1.08995 * 109.47495 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46881 * 240.00530 * 2 1 3 29 29 H 1.08998 * 109.47073 * 120.00852 * 2 1 3 30 30 H 0.97000 * 120.00195 * 359.97438 * 8 6 3 31 31 H 1.09002 * 109.46877 * 59.99845 * 9 8 6 32 32 H 1.08999 * 109.47195 * 299.99813 * 9 8 6 33 33 H 1.09000 * 109.47604 * 299.87595 * 11 10 9 34 34 H 1.09004 * 109.47201 * 59.87360 * 11 10 9 35 35 H 1.09000 * 109.47333 * 179.87598 * 11 10 9 36 36 H 1.09001 * 109.68414 * 291.94993 * 12 10 9 37 37 H 1.09001 * 109.68139 * 52.50357 * 12 10 9 38 38 H 0.97002 * 120.00383 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.68310 * 290.77188 * 22 13 12 40 40 H 1.09005 * 109.67869 * 170.25970 * 22 13 12 41 41 H 1.09001 * 109.51044 * 67.59999 * 23 22 13 42 42 H 1.09000 * 109.51036 * 187.70217 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6699 2.0679 1.1955 6 6 3.5420 1.4443 -0.1238 7 8 4.2065 0.6810 0.5446 8 7 4.1467 2.2941 -0.9773 9 6 5.6068 2.2962 -1.0973 10 6 6.0324 3.3456 -2.1262 11 6 5.5596 4.7283 -1.6729 12 6 7.5597 3.3443 -2.2571 13 7 7.9309 4.2220 -3.3794 14 6 8.8786 5.1988 -3.2281 15 1 8.8562 6.0753 -3.8587 16 6 9.8681 5.0623 -2.2642 17 7 10.1081 3.8838 -1.7295 18 14 10.8594 6.5514 -1.7259 19 1 10.1814 7.2096 -0.5804 20 1 12.2190 6.1186 -1.3143 21 1 10.9657 7.5098 -2.8552 22 6 7.2520 4.0184 -4.6690 23 6 5.7396 3.9870 -4.4205 24 8 5.4510 3.0342 -3.3945 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 3.6152 2.9043 -1.5121 31 1 5.9461 1.3122 -1.4208 32 1 6.0504 2.5339 -0.1305 33 1 4.4732 4.7299 -1.5843 34 1 6.0033 4.9651 -0.7058 35 1 5.8654 5.4751 -2.4056 36 1 8.0075 3.7173 -1.3360 37 1 7.9106 2.3309 -2.4522 38 1 10.7993 3.7886 -1.0557 39 1 7.5719 3.0730 -5.1070 40 1 7.4959 4.8375 -5.3456 41 1 5.4018 4.9744 -4.1060 42 1 5.2258 3.7016 -5.3385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108121843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:50 Heat of formation + Delta-G solvation = -113.966237 kcal Electronic energy + Delta-G solvation = -24158.456188 eV Core-core repulsion = 20474.619196 eV Total energy + Delta-G solvation = -3683.836992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.99481 -39.81238 -38.78800 -35.07918 -34.39205 -34.16091 -31.87284 -31.29758 -28.31193 -27.96864 -26.34713 -25.32577 -23.28376 -22.33873 -21.21176 -20.51926 -18.81740 -17.82789 -17.19922 -16.80279 -16.11865 -15.67244 -15.35466 -15.15137 -14.64262 -14.42618 -14.16172 -14.08385 -13.92782 -13.56901 -13.19828 -13.07982 -12.79102 -12.55737 -12.47658 -12.11211 -11.93143 -11.63039 -11.34843 -11.24089 -11.09690 -11.05766 -10.86526 -10.71858 -10.35857 -10.27500 -10.05159 -9.78659 -9.57488 -9.11427 -8.96308 -8.57793 -6.78974 -5.88193 -3.31859 2.45339 3.00965 3.32075 3.39135 3.40581 4.15961 4.24804 4.40155 4.40678 4.54390 4.67806 5.06094 5.10571 5.18864 5.30015 5.39643 5.41035 5.46140 5.62619 5.65933 5.83930 5.86760 5.88696 5.94257 5.94899 6.02332 6.08446 6.24346 6.37606 6.48300 6.60211 6.70333 6.77622 7.02120 7.41125 7.46526 7.67234 7.81361 8.12286 8.28869 9.06716 9.69817 10.26808 11.19834 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.026224 B = 0.003864 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.477694 B = 7245.212922 C = 7724.645231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.098 0.902 5 F -0.192 7.192 6 C 0.487 3.513 7 O -0.526 6.526 8 N -0.707 5.707 9 C 0.137 3.863 10 C 0.078 3.922 11 C -0.162 4.162 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.255 4.255 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.904 3.096 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.385 6.385 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.404 0.596 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.256 0.744 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 -3.062 -0.303 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.044 3.956 4 H 0.116 0.884 5 F -0.173 7.173 6 C 0.269 3.731 7 O -0.402 6.402 8 N -0.358 5.358 9 C 0.014 3.986 10 C 0.037 3.963 11 C -0.220 4.220 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.385 4.385 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.305 6.305 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.613 -3.780 0.281 17.040 hybrid contribution 0.565 1.334 0.056 1.450 sum -16.048 -2.446 0.337 16.236 Atomic orbital electron populations 1.21774 0.94277 1.02540 1.02438 1.21982 0.97089 0.93682 1.05134 1.21635 0.92417 0.96168 0.85402 0.88372 1.92874 1.92085 1.83940 1.48375 1.20912 0.90164 0.81274 0.80708 1.90735 1.66046 1.39362 1.44047 1.46066 1.08858 1.38807 1.42112 1.21445 0.78544 0.99955 0.98693 1.22557 0.97875 0.92925 0.82973 1.22215 0.99061 0.97971 1.02750 1.21305 0.86636 0.94457 0.94305 1.44014 1.44203 1.38874 1.04340 1.19166 1.04054 0.96673 1.18570 0.91355 1.25045 0.96800 0.96373 1.01278 1.70007 1.33369 1.20829 1.30313 0.86270 0.79301 0.82301 0.78784 1.21335 1.21651 1.20420 1.21596 0.91075 0.99211 0.89851 1.23045 0.97683 0.92410 0.90066 1.87798 1.74329 1.49339 1.18997 0.91987 0.92348 0.91778 0.89692 0.89444 0.76056 0.90553 0.89808 0.93949 0.91806 0.90709 0.88499 0.95206 0.93381 0.95639 0.92018 0.93341 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.83 37.16 0.37 -0.76 16 2 C -0.14 -1.34 5.41 -26.73 -0.14 -1.49 16 3 C 0.08 0.90 3.77 -27.88 -0.11 0.80 16 4 H 0.10 0.76 7.99 -51.93 -0.42 0.35 16 5 F -0.19 -2.45 16.75 2.25 0.04 -2.41 16 6 C 0.49 7.02 7.17 -10.98 -0.08 6.94 16 7 O -0.53 -9.63 16.61 5.56 0.09 -9.53 16 8 N -0.71 -9.84 5.15 -60.29 -0.31 -10.15 16 9 C 0.14 2.30 4.82 -4.04 -0.02 2.28 16 10 C 0.08 1.40 0.76 -90.47 -0.07 1.34 16 11 C -0.16 -2.71 7.92 37.16 0.29 -2.42 16 12 C 0.16 3.65 4.12 -3.49 -0.01 3.63 16 13 N -0.59 -14.13 2.57 -171.76 -0.44 -14.57 16 14 C -0.26 -6.70 9.65 -15.06 -0.15 -6.85 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 16 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 17 N -0.90 -25.42 11.14 55.49 0.62 -24.80 16 18 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 C 0.11 2.18 6.73 -3.53 -0.02 2.16 16 23 C 0.05 0.76 6.60 37.31 0.25 1.01 16 24 O -0.39 -6.79 9.97 -35.23 -0.35 -7.14 16 25 H 0.06 0.48 7.94 -51.93 -0.41 0.07 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.40 4.77 7.10 -40.82 -0.29 4.48 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.04 0.58 6.88 -51.93 -0.36 0.23 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.36 6.11 -51.93 -0.32 1.05 16 36 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 41 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -30.71 338.70 -6.68 -37.39 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.62 Total: 3.37 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 0.22 Total: 6.67 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.13 Total: -49.53 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.26 Total: -16.67 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.71 -6.68 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108121843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.580 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds