Wall clock time and date at job start Tue Mar 31 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48501 * 109.47001 * 239.99962 * 3 2 1 5 5 H 1.48497 * 109.47126 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47242 * 120.00003 * 3 2 1 7 7 C 1.38810 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99881 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47112 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47171 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99729 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.47222 * 179.97438 * 15 13 12 17 17 C 1.38541 * 126.21162 * 265.00260 * 16 15 13 18 18 N 1.31486 * 109.00658 * 179.97438 * 17 16 15 19 19 N 1.40040 * 108.91563 * 359.97438 * 18 17 16 20 20 C 1.36529 * 132.43543 * 179.97438 * 19 18 17 21 21 C 1.34934 * 120.66189 * 179.97438 * 20 19 18 22 22 C 1.40473 * 120.43067 * 0.02562 * 21 20 19 23 23 C 1.36056 * 119.59175 * 0.02562 * 22 21 20 24 24 C 1.37140 * 107.44206 * 0.02562 * 19 18 17 25 25 H 0.96994 * 120.00076 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99605 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47400 * 60.00457 * 10 9 7 28 28 H 1.08993 * 109.47932 * 300.00156 * 10 9 7 29 29 H 1.09001 * 109.46691 * 59.99929 * 11 10 9 30 30 H 1.09001 * 109.46725 * 300.00461 * 11 10 9 31 31 H 0.96999 * 120.00455 * 359.97438 * 12 11 10 32 32 H 1.09001 * 109.47571 * 59.99817 * 15 13 12 33 33 H 1.09001 * 109.47439 * 299.99372 * 15 13 12 34 34 H 1.08003 * 125.50011 * 359.97438 * 17 16 15 35 35 H 1.07997 * 119.66852 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.78550 * 179.75136 * 21 20 19 37 37 H 1.07998 * 120.20517 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.39088 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.0639 -4.8197 0.0022 12 7 1.7964 -6.0884 0.0029 13 6 1.1225 -7.2556 0.0030 14 8 -0.0903 -7.2557 0.0030 15 6 1.8761 -8.5607 0.0030 16 6 0.8968 -9.7062 0.0038 17 6 0.4395 -10.3913 1.1177 18 7 -0.4030 -11.3238 0.7310 19 7 -0.5242 -11.2761 -0.6634 20 6 -1.2562 -12.0122 -1.5502 21 6 -1.1927 -11.7571 -2.8737 22 6 -0.3700 -10.7282 -3.3613 23 6 0.3662 -9.9867 -2.4900 24 6 0.2880 -10.2664 -1.1123 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0023 27 1 2.6854 -3.7141 0.8912 28 1 2.6841 -3.7149 -0.8887 29 1 0.4369 -4.7622 -0.8875 30 1 0.4375 -4.7617 0.8924 31 1 2.7664 -6.0884 0.0024 32 1 2.5028 -8.6184 0.8929 33 1 2.5026 -8.6186 -0.8870 34 1 0.7283 -10.1917 2.1391 35 1 -1.8931 -12.8059 -1.1886 36 1 -1.7747 -12.3509 -3.5630 37 1 -0.3217 -10.5275 -4.4214 38 1 1.0027 -9.1922 -2.8508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129718474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:19 Heat of formation + Delta-G solvation = 80.198575 kcal Electronic energy + Delta-G solvation = -21235.816865 eV Core-core repulsion = 17887.628373 eV Total energy + Delta-G solvation = -3348.188492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19707 -39.37608 -37.43033 -35.64283 -33.76863 -33.70897 -31.45422 -30.91686 -30.68384 -27.99190 -26.36983 -23.99915 -23.58231 -22.77656 -21.53393 -21.13230 -19.97691 -17.46110 -17.29896 -16.95267 -16.82225 -16.19357 -15.63373 -15.43748 -15.34866 -14.88071 -14.56371 -14.03864 -13.72644 -13.50659 -13.28751 -13.08787 -12.82697 -12.63032 -12.03547 -11.98775 -11.89134 -11.33729 -11.08689 -10.84032 -10.78962 -10.77854 -10.63018 -10.14510 -9.82712 -9.60731 -9.52029 -8.95439 -8.76248 -7.68656 -6.98651 -5.78760 -3.09547 0.54423 0.90221 2.07923 2.50452 2.84794 3.12124 3.43088 3.45659 3.48498 3.54157 4.01744 4.39933 4.47823 4.58929 4.62458 4.77505 4.89761 5.00861 5.16826 5.24767 5.33908 5.44004 5.51177 5.59501 5.62806 5.79804 5.82309 5.99277 5.99562 6.14125 6.18530 6.37754 6.54520 6.68569 6.73117 6.80242 7.38938 7.65807 7.72343 8.38715 8.45742 9.49972 10.05305 10.39857 11.43830 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.002498 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.578665 B =11205.407701 C =11512.650989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.727 5.727 13 C 0.506 3.494 14 O -0.534 6.534 15 C -0.055 4.055 16 C -0.230 4.230 17 C 0.093 3.907 18 N -0.323 5.323 19 N -0.275 5.275 20 C 0.110 3.890 21 C -0.166 4.166 22 C -0.087 4.087 23 C -0.106 4.106 24 C 0.118 3.882 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.399 0.601 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.190 0.810 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -26.682 -4.985 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.379 5.379 13 C 0.291 3.709 14 O -0.410 6.410 15 C -0.096 4.096 16 C -0.241 4.241 17 C -0.084 4.084 18 N -0.146 5.146 19 N -0.041 5.041 20 C -0.015 4.015 21 C -0.188 4.188 22 C -0.110 4.110 23 C -0.126 4.126 24 C 0.000 4.000 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.232 0.768 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.207 0.793 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.723 -27.508 -4.429 27.916 hybrid contribution 1.028 1.686 -0.233 1.988 sum 2.750 -25.823 -4.663 26.384 Atomic orbital electron populations 1.69656 1.05165 1.25964 1.57153 1.24783 0.95561 0.97826 1.02689 0.86222 0.78488 0.83309 0.77860 1.21187 1.21621 1.21184 1.19151 0.91000 0.83892 1.43499 0.91080 1.42197 1.06015 0.99615 1.89695 1.20755 0.93505 0.85703 0.98341 1.21539 0.95413 0.81903 1.02382 1.45966 1.10329 1.05978 1.75622 1.20726 0.88461 0.85231 0.76482 1.90718 1.14083 1.87553 1.48620 1.19838 0.96162 0.88833 1.04754 1.19205 1.09774 1.04576 0.90593 1.23634 0.92922 0.91978 0.99836 1.77858 1.25572 1.26346 0.84800 1.46115 1.28819 1.22698 1.06508 1.21454 0.95454 0.96399 0.88221 1.20825 1.03156 1.01212 0.93585 1.21146 0.94880 0.94336 1.00647 1.20630 1.01606 1.01055 0.89321 1.19275 0.94566 0.91609 0.94596 0.93305 0.78020 0.95820 0.95857 0.91516 0.91477 0.76754 0.87929 0.88529 0.79295 0.81674 0.82937 0.84191 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.71 5.60 -59.91 -0.34 -19.04 16 10 C 0.15 2.84 6.37 -4.04 -0.03 2.81 16 11 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 12 N -0.73 -9.64 5.56 -60.29 -0.33 -9.97 16 13 C 0.51 7.07 7.82 -10.98 -0.09 6.99 16 14 O -0.53 -10.11 16.03 5.56 0.09 -10.02 16 15 C -0.05 -0.53 6.19 -29.03 -0.18 -0.71 16 16 C -0.23 -2.78 4.68 -104.25 -0.49 -3.27 16 17 C 0.09 1.12 11.87 -17.59 -0.21 0.91 16 18 N -0.32 -4.37 12.66 30.46 0.39 -3.99 16 19 N -0.27 -3.41 3.90 -10.71 -0.04 -3.45 16 20 C 0.11 0.97 11.19 -16.63 -0.19 0.79 16 21 C -0.17 -1.13 9.98 -39.91 -0.40 -1.53 16 22 C -0.09 -0.66 10.07 -39.52 -0.40 -1.06 16 23 C -0.11 -1.05 10.09 -39.40 -0.40 -1.45 16 24 C 0.12 1.46 6.76 -84.27 -0.57 0.89 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.39 10.51 7.67 -40.82 -0.31 10.19 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.19 1.67 8.06 -52.48 -0.42 1.24 16 35 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -37.35 335.40 -7.55 -44.90 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.86 Total: 8.13 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.21 Total: -1.17 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: 0.40 Total: -64.21 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.35 -7.55 -44.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129718474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.095 kcal (2) G-P(sol) polarization free energy of solvation -37.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds