Wall clock time and date at job start Tue Mar 31 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48501 * 109.47001 * 239.99962 * 3 2 1 5 5 H 1.48497 * 109.47126 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47242 * 120.00003 * 3 2 1 7 7 C 1.38810 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99881 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47112 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47171 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99729 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.47222 * 179.97438 * 15 13 12 17 17 C 1.38541 * 126.21162 * 265.00260 * 16 15 13 18 18 N 1.31486 * 109.00658 * 179.97438 * 17 16 15 19 19 N 1.40040 * 108.91563 * 359.97438 * 18 17 16 20 20 C 1.36529 * 132.43543 * 179.97438 * 19 18 17 21 21 C 1.34934 * 120.66189 * 179.97438 * 20 19 18 22 22 C 1.40473 * 120.43067 * 0.02562 * 21 20 19 23 23 C 1.36056 * 119.59175 * 0.02562 * 22 21 20 24 24 C 1.37140 * 107.44206 * 0.02562 * 19 18 17 25 25 H 0.96994 * 120.00076 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99605 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47400 * 60.00457 * 10 9 7 28 28 H 1.08993 * 109.47932 * 300.00156 * 10 9 7 29 29 H 1.09001 * 109.46691 * 59.99929 * 11 10 9 30 30 H 1.09001 * 109.46725 * 300.00461 * 11 10 9 31 31 H 0.96999 * 120.00455 * 359.97438 * 12 11 10 32 32 H 1.09001 * 109.47571 * 59.99817 * 15 13 12 33 33 H 1.09001 * 109.47439 * 299.99372 * 15 13 12 34 34 H 1.08003 * 125.50011 * 359.97438 * 17 16 15 35 35 H 1.07997 * 119.66852 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.78550 * 179.75136 * 21 20 19 37 37 H 1.07998 * 120.20517 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.39088 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.0639 -4.8197 0.0022 12 7 1.7964 -6.0884 0.0029 13 6 1.1225 -7.2556 0.0030 14 8 -0.0903 -7.2557 0.0030 15 6 1.8761 -8.5607 0.0030 16 6 0.8968 -9.7062 0.0038 17 6 0.4395 -10.3913 1.1177 18 7 -0.4030 -11.3238 0.7310 19 7 -0.5242 -11.2761 -0.6634 20 6 -1.2562 -12.0122 -1.5502 21 6 -1.1927 -11.7571 -2.8737 22 6 -0.3700 -10.7282 -3.3613 23 6 0.3662 -9.9867 -2.4900 24 6 0.2880 -10.2664 -1.1123 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0023 27 1 2.6854 -3.7141 0.8912 28 1 2.6841 -3.7149 -0.8887 29 1 0.4369 -4.7622 -0.8875 30 1 0.4375 -4.7617 0.8924 31 1 2.7664 -6.0884 0.0024 32 1 2.5028 -8.6184 0.8929 33 1 2.5026 -8.6186 -0.8870 34 1 0.7283 -10.1917 2.1391 35 1 -1.8931 -12.8059 -1.1886 36 1 -1.7747 -12.3509 -3.5630 37 1 -0.3217 -10.5275 -4.4214 38 1 1.0027 -9.1922 -2.8508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129718474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:18 Heat of formation + Delta-G solvation = 52.763319 kcal Electronic energy + Delta-G solvation = -21237.006547 eV Core-core repulsion = 17887.628373 eV Total energy + Delta-G solvation = -3349.378174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.96104 -40.54763 -38.13603 -37.26673 -35.41887 -34.50479 -33.16641 -31.84325 -31.51267 -29.48294 -27.42111 -25.44141 -24.67408 -23.58703 -23.09228 -22.13635 -20.99354 -19.30983 -18.16339 -18.00781 -17.64212 -16.95179 -16.75106 -16.58198 -16.42365 -16.36962 -15.65391 -15.24670 -15.22535 -15.03215 -14.44652 -14.37413 -14.00446 -13.37603 -13.03822 -13.02880 -12.74189 -12.69130 -12.61208 -12.49368 -12.47469 -12.10868 -11.85895 -11.63458 -11.41348 -10.96771 -10.83629 -10.28145 -10.06029 -9.05946 -8.45261 -7.96125 -5.27713 -0.12209 0.18145 1.37657 1.48817 1.52819 1.58852 1.64865 1.75883 2.27752 2.52150 2.63070 3.32283 3.38002 3.72465 3.90625 3.95795 3.99303 4.08466 4.16378 4.20918 4.23804 4.31671 4.45309 4.59231 4.62426 4.72135 4.78775 5.00147 5.07954 5.14427 5.16681 5.32697 5.44789 5.51627 5.52753 5.61990 5.96748 6.24595 6.58264 6.68472 7.30481 7.38817 8.03089 8.25671 9.27564 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.002498 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.578665 B =11205.407701 C =11512.650989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.749 5.749 10 C 0.150 3.850 11 C 0.129 3.871 12 N -0.712 5.712 13 C 0.506 3.494 14 O -0.588 6.588 15 C -0.041 4.041 16 C -0.256 4.256 17 C 0.080 3.920 18 N -0.363 5.363 19 N -0.287 5.287 20 C 0.081 3.919 21 C -0.151 4.151 22 C -0.077 4.077 23 C -0.134 4.134 24 C 0.100 3.900 25 H 0.252 0.748 26 H 0.373 0.627 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.419 0.581 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.210 0.790 35 H 0.186 0.814 36 H 0.194 0.806 37 H 0.174 0.826 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -27.643 -6.343 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.004 3.996 12 N -0.366 5.366 13 C 0.294 3.706 14 O -0.468 6.468 15 C -0.081 4.081 16 C -0.268 4.268 17 C -0.095 4.095 18 N -0.187 5.187 19 N -0.053 5.053 20 C -0.043 4.043 21 C -0.172 4.172 22 C -0.099 4.099 23 C -0.154 4.154 24 C -0.020 4.020 25 H 0.061 0.939 26 H 0.204 0.796 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.227 0.773 35 H 0.203 0.797 36 H 0.211 0.789 37 H 0.191 0.809 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.678 -28.517 -5.784 29.329 hybrid contribution 0.405 1.839 0.071 1.884 sum 4.083 -26.678 -5.713 27.587 Atomic orbital electron populations 1.69835 1.06911 1.26365 1.59196 1.25696 0.96430 1.01564 1.03384 0.85114 0.77090 0.78532 0.78411 1.19978 1.22390 1.20081 1.19636 0.91767 0.84854 1.41719 0.89783 1.42459 1.05740 1.01242 1.89792 1.20858 0.93563 0.83964 0.99321 1.21074 0.94793 0.83228 1.00548 1.45763 1.11198 1.04422 1.75184 1.21549 0.87981 0.86362 0.74659 1.90700 1.16746 1.88282 1.51059 1.19879 0.95550 0.85070 1.07634 1.19530 1.11051 1.05592 0.90597 1.24062 0.92649 0.91814 1.01014 1.77736 1.27082 1.27836 0.86003 1.46389 1.29283 1.23236 1.06441 1.22147 0.96066 0.97226 0.88893 1.21389 1.02056 1.00518 0.93270 1.21665 0.93117 0.93128 1.02039 1.20929 1.03255 1.02472 0.88731 1.19782 0.94617 0.91722 0.95833 0.93920 0.79600 0.94394 0.94273 0.93377 0.93549 0.74384 0.84735 0.85610 0.77332 0.79723 0.78939 0.80906 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -38.44 5.60 -343.46 -1.92 -40.36 16 10 C 0.15 5.68 6.37 86.38 0.55 6.23 16 11 C 0.13 4.46 5.79 86.38 0.50 4.96 16 12 N -0.71 -17.85 5.56 -463.05 -2.57 -20.42 16 13 C 0.51 13.74 7.82 87.66 0.69 14.43 16 14 O -0.59 -22.72 16.03 -3.02 -0.05 -22.77 16 15 C -0.04 -0.72 6.19 29.10 0.18 -0.54 16 16 C -0.26 -6.10 4.68 -19.63 -0.09 -6.19 16 17 C 0.08 1.97 11.87 84.82 1.01 2.97 16 18 N -0.36 -10.15 12.66 -57.54 -0.73 -10.87 16 19 N -0.29 -7.16 3.90 -187.79 -0.73 -7.89 16 20 C 0.08 1.35 11.19 83.20 0.93 2.28 16 21 C -0.15 -1.66 9.98 22.05 0.22 -1.44 16 22 C -0.08 -0.96 10.07 22.31 0.22 -0.74 16 23 C -0.13 -2.48 10.09 22.39 0.23 -2.25 16 24 C 0.10 2.44 6.76 39.10 0.26 2.70 16 25 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.42 7.15 8.47 -92.71 -0.79 6.37 16 32 H 0.13 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.21 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -83.73 335.40 1.90 -81.83 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.40 Total: 27.54 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.00 Total: 5.42 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -5.67 Total: -139.81 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -83.73 1.90 -81.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129718474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.591 kcal (2) G-P(sol) polarization free energy of solvation -83.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds