Wall clock time and date at job start Tue Mar 31 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40569 * 119.82856 * 2 1 4 4 C 1.35900 * 119.72713 * 180.02562 * 3 2 1 5 5 C 1.41187 * 119.34828 * 359.90440 * 4 3 2 6 6 N 1.32234 * 132.04722 * 180.02562 * 5 4 3 7 7 C 1.34583 * 109.02391 * 180.02562 * 6 5 4 8 8 C 1.47591 * 125.92101 * 179.97438 * 7 6 5 9 9 O 1.21593 * 120.00214 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99522 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72390 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99757 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00476 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00121 * 18 16 14 20 20 H 1.48506 * 109.46994 * 210.00426 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99871 * 18 16 14 22 22 C 1.36580 * 108.16480 * 0.26567 * 7 6 5 23 23 N 1.36198 * 107.09018 * 359.57255 * 22 7 6 24 24 C 1.34852 * 119.82179 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47342 * 269.98231 * 1 2 3 26 26 H 1.09001 * 109.46824 * 29.98092 * 1 2 3 27 27 H 1.09001 * 109.47269 * 149.97653 * 1 2 3 28 28 H 1.07998 * 120.13632 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.32458 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 32 32 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 33 33 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 34 34 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 35 35 H 0.97000 * 120.00386 * 359.97438 * 13 12 11 36 36 H 0.96996 * 120.00458 * 179.97438 * 17 16 14 37 37 H 1.07997 * 126.45344 * 179.74091 * 22 7 6 38 38 H 1.07993 * 119.68303 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2195 0.0000 4 6 3.5652 1.2171 -0.0005 5 6 4.2550 -0.0148 0.0010 6 7 5.5445 -0.3078 0.0013 7 6 5.6904 -1.6457 0.0024 8 6 6.9724 -2.3769 0.0026 9 8 6.9789 -3.5928 0.0031 10 7 8.1360 -1.6968 0.0021 11 6 9.4086 -2.4225 0.0084 12 6 10.5662 -1.4221 0.0135 13 7 11.8388 -2.1478 0.0204 14 6 13.0210 -1.4568 0.0253 15 1 13.0153 -0.3769 0.0245 16 6 14.2268 -2.1445 0.0324 17 7 14.2339 -3.4606 0.0349 18 14 15.8396 -1.2018 0.0398 19 1 16.2596 -0.9505 1.4417 20 1 16.8824 -1.9997 -0.6541 21 1 15.6587 0.0940 -0.6627 22 6 4.4464 -2.2097 -0.0033 23 7 3.5443 -1.1893 0.0019 24 6 2.1776 -1.1699 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6656 2.1544 0.0004 29 1 4.1121 2.1483 -0.0009 30 1 8.1309 -0.7268 0.0021 31 1 9.4655 -3.0485 0.8990 32 1 9.4739 -3.0492 -0.8810 33 1 10.5093 -0.7961 -0.8770 34 1 10.5010 -0.7954 0.9030 35 1 11.8440 -3.1178 0.0215 36 1 15.0764 -3.9411 0.0394 37 1 4.2207 -3.2658 -0.0080 38 1 1.6296 -2.1005 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130219811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:06 Heat of formation + Delta-G solvation = 37.273734 kcal Electronic energy + Delta-G solvation = -20956.763171 eV Core-core repulsion = 17606.713317 eV Total energy + Delta-G solvation = -3350.049853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.94245 -40.69234 -38.63038 -37.34126 -35.57215 -34.79235 -33.32604 -32.93593 -30.25952 -29.54905 -27.77567 -25.88117 -24.78814 -23.82496 -23.18102 -22.85834 -21.23331 -19.40140 -19.20808 -17.87782 -17.67478 -17.27266 -16.94012 -16.54666 -16.45839 -16.05103 -15.52042 -15.34380 -15.20000 -15.08104 -14.85176 -14.56017 -14.23676 -13.26495 -13.17797 -13.14533 -13.05458 -12.69206 -12.54925 -12.46363 -12.45691 -12.09467 -11.93493 -11.88533 -11.60691 -11.27431 -11.00339 -10.28079 -9.78635 -9.07956 -8.95200 -7.97119 -5.28934 -0.38119 0.15618 0.91356 1.38001 1.48086 1.50931 1.59441 2.05166 2.21913 2.50820 2.57286 2.94972 3.36485 3.37141 3.66242 3.85561 3.95739 3.98965 4.07977 4.14860 4.18728 4.25004 4.44443 4.54101 4.70985 4.78219 4.90536 4.97282 5.04158 5.09421 5.24071 5.25702 5.30413 5.32052 5.47908 5.55502 5.89757 6.23304 6.31861 6.61931 7.04659 7.29656 8.00048 8.24933 9.26446 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.045135 B = 0.002342 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.207835 B =11951.831627 C =12546.265725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.096 4.096 3 C -0.077 4.077 4 C -0.098 4.098 5 C 0.210 3.790 6 N -0.498 5.498 7 C -0.022 4.022 8 C 0.598 3.402 9 O -0.572 6.572 10 N -0.698 5.698 11 C 0.128 3.872 12 C 0.149 3.851 13 N -0.745 5.745 14 C -0.250 4.250 15 H 0.082 0.918 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.982 3.018 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.267 1.267 22 C -0.015 4.015 23 N -0.362 5.362 24 C 0.030 3.970 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.181 0.819 29 H 0.167 0.833 30 H 0.417 0.583 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.375 0.625 36 H 0.253 0.747 37 H 0.213 0.787 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.377 10.738 -0.128 36.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.100 4.100 4 C -0.118 4.118 5 C -0.036 4.036 6 N -0.220 5.220 7 C -0.154 4.154 8 C 0.384 3.616 9 O -0.452 6.452 10 N -0.349 5.349 11 C 0.004 3.996 12 C 0.023 3.977 13 N -0.388 5.388 14 C -0.382 4.382 15 H 0.099 0.901 16 C -0.270 4.270 17 N -0.620 5.620 18 Si 0.810 3.190 19 H -0.212 1.212 20 H -0.221 1.221 21 H -0.191 1.191 22 C -0.152 4.152 23 N -0.032 5.032 24 C -0.090 4.090 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.198 0.802 29 H 0.184 0.816 30 H 0.253 0.747 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.207 0.793 36 H 0.062 0.938 37 H 0.230 0.770 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -34.565 10.524 -0.135 36.132 hybrid contribution 0.900 -0.546 0.035 1.054 sum -33.665 9.977 -0.101 35.112 Atomic orbital electron populations 1.20812 0.86133 1.04985 1.04124 1.20038 0.99115 0.90989 0.99724 1.21526 0.92483 0.99935 0.96072 1.20651 0.94798 0.93917 1.02390 1.21511 0.86938 0.89033 1.06112 1.70722 1.15610 1.12845 1.22782 1.20359 0.93340 0.90603 1.11108 1.17192 0.82767 0.85901 0.75760 1.90776 1.87752 1.14056 1.52575 1.45585 1.04626 1.11393 1.73257 1.21259 0.81785 0.94847 1.01747 1.20811 0.84180 0.93601 0.99153 1.42389 1.00888 1.05784 1.89783 1.19652 0.84897 0.91684 1.41938 0.90054 1.25702 1.01466 0.96555 1.03248 1.69836 1.26161 1.06966 1.59009 0.85024 0.78796 0.77665 0.77525 1.21204 1.22091 1.19140 1.22793 0.86855 0.95047 1.10467 1.42823 1.07390 1.07743 1.45291 1.22161 0.79044 1.02819 1.04973 0.89369 0.89077 0.89953 0.80172 0.81582 0.74664 0.92077 0.92052 0.94678 0.94698 0.79285 0.93835 0.77024 0.78997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.01 10.00 71.24 0.71 0.72 16 2 C -0.10 -0.65 5.85 -20.07 -0.12 -0.77 16 3 C -0.08 -0.57 9.73 22.30 0.22 -0.35 16 4 C -0.10 -1.39 10.11 22.45 0.23 -1.17 16 5 C 0.21 4.77 7.79 134.20 1.05 5.81 16 6 N -0.50 -14.37 11.01 -183.49 -2.02 -16.39 16 7 C -0.02 -0.66 6.94 40.80 0.28 -0.38 16 8 C 0.60 21.03 7.82 86.71 0.68 21.71 16 9 O -0.57 -23.16 16.87 -4.01 -0.07 -23.23 16 10 N -0.70 -23.70 5.55 -466.19 -2.59 -26.28 16 11 C 0.13 4.92 5.79 86.38 0.50 5.42 16 12 C 0.15 6.30 6.37 86.38 0.55 6.85 16 13 N -0.74 -39.84 5.60 -343.45 -1.92 -41.76 16 14 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 15 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 16 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 17 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 18 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C -0.01 -0.35 11.47 83.63 0.96 0.61 16 23 N -0.36 -7.05 2.93 -351.24 -1.03 -8.08 16 24 C 0.03 0.32 10.54 83.16 0.88 1.20 16 25 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.09 -0.21 8.09 -2.39 -0.02 -0.23 16 27 H 0.08 -0.12 8.07 -2.39 -0.02 -0.14 16 28 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 29 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.42 12.79 8.17 -92.71 -0.76 12.03 16 31 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.38 21.40 7.67 -92.71 -0.71 20.69 16 36 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.21 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -78.91 334.88 1.55 -77.36 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.37 Total: 28.18 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 7.24 Total: 21.99 kcal Atomic # 7 Polarization: -146.04 SS G_CDS: -7.28 Total: -153.32 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.07 Total: -23.23 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -78.91 1.55 -77.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130219811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.636 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds