Wall clock time and date at job start Tue Mar 31 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36321 * 119.74822 * 2 1 4 4 C 1.47524 * 120.16821 * 359.97438 * 3 2 1 5 5 O 1.21597 * 119.99780 * 6.43178 * 4 3 2 6 6 N 1.34776 * 120.00031 * 186.43518 * 4 3 2 7 7 C 1.46496 * 119.99990 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47125 * 179.97438 * 7 6 4 9 9 N 1.46504 * 109.47194 * 179.97438 * 8 7 6 10 10 C 1.36932 * 120.00355 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99587 * 0.02562 * 10 9 8 12 12 C 1.38804 * 120.00340 * 180.02562 * 10 9 8 13 13 N 1.31614 * 120.00026 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00266 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47190 * 59.99358 * 14 12 10 16 16 H 1.48499 * 109.47367 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46688 * 300.00153 * 14 12 10 18 18 C 1.46500 * 119.66650 * 180.02562 * 3 2 1 19 19 C 1.35532 * 119.04592 * 0.02562 * 18 3 2 20 20 C 1.41226 * 119.42984 * 359.97313 * 19 18 3 21 21 C 1.37910 * 132.97703 * 180.02562 * 20 19 18 22 22 N 1.33447 * 107.66239 * 179.75765 * 21 20 19 23 23 C 1.30751 * 109.93431 * 0.37132 * 22 21 20 24 24 N 1.35920 * 109.20881 * 359.62644 * 23 22 21 25 25 H 1.09000 * 109.46918 * 276.88571 * 1 2 3 26 26 H 1.08996 * 109.47085 * 36.88026 * 1 2 3 27 27 H 1.08996 * 109.47121 * 156.88118 * 1 2 3 28 28 H 0.96998 * 120.00086 * 359.97438 * 6 4 3 29 29 H 1.09004 * 109.47089 * 299.99433 * 7 6 4 30 30 H 1.09001 * 109.47214 * 59.99512 * 7 6 4 31 31 H 1.08992 * 109.47485 * 299.99922 * 8 7 6 32 32 H 1.09001 * 109.47106 * 59.99895 * 8 7 6 33 33 H 0.97008 * 119.99766 * 0.02562 * 9 8 7 34 34 H 0.97000 * 120.00286 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.48024 * 180.02562 * 18 3 2 36 36 H 1.08009 * 120.28779 * 179.97438 * 19 18 3 37 37 H 1.08006 * 126.16483 * 359.97438 * 21 20 19 38 38 H 1.07999 * 125.39375 * 179.88558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4439 2.4601 -0.0006 5 8 0.2337 2.4616 0.1169 6 7 2.1098 3.6245 -0.1314 7 6 1.3755 4.8922 -0.1314 8 6 2.3603 6.0520 -0.2924 9 7 1.6260 7.3197 -0.2930 10 6 2.3025 8.5029 -0.4250 11 1 3.3775 8.5015 -0.5291 12 6 1.6068 9.7040 -0.4251 13 7 0.2968 9.7057 -0.2978 14 14 2.5297 11.3180 -0.6058 15 1 3.2620 11.3275 -1.8976 16 1 1.5646 12.4463 -0.5749 17 1 3.4963 11.4633 0.5122 18 6 3.6484 1.1815 -0.0006 19 6 4.3047 -0.0043 -0.0016 20 6 3.5646 -1.2071 -0.0016 21 6 3.9312 -2.5366 -0.0020 22 7 2.8131 -3.2649 0.0037 23 6 1.7687 -2.4783 -0.0003 24 7 2.1836 -1.1840 -0.0005 25 1 -0.3633 0.1232 1.0203 26 1 -0.3633 0.8220 -0.6167 27 1 -0.3633 -0.9451 -0.4035 28 1 3.0753 3.6233 -0.2248 29 1 0.6653 4.9007 -0.9583 30 1 0.8378 5.0006 0.8105 31 1 3.0702 6.0434 0.5346 32 1 2.8983 5.9438 -1.2342 33 1 0.6604 7.3210 -0.1992 34 1 -0.1894 10.5451 -0.2974 35 1 4.1976 2.1114 -0.0002 36 1 5.3845 -0.0293 -0.0025 37 1 4.9413 -2.9192 -0.0029 38 1 0.7393 -2.8053 0.0010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130656045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:11 Heat of formation + Delta-G solvation = 46.533944 kcal Electronic energy + Delta-G solvation = -21479.866542 eV Core-core repulsion = 18130.218242 eV Total energy + Delta-G solvation = -3349.648300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.83291 -41.07292 -38.15971 -37.30232 -35.78257 -34.85137 -33.23151 -32.55624 -30.19229 -29.36241 -28.24637 -25.87268 -24.64524 -23.74375 -23.00499 -22.29996 -21.65719 -19.39754 -19.25573 -18.16221 -17.36940 -17.21405 -17.05972 -16.58522 -16.51785 -15.91506 -15.55492 -15.29562 -15.11723 -14.92621 -14.56708 -14.55909 -14.14553 -14.03654 -13.58487 -13.06522 -13.02624 -12.65394 -12.60106 -12.54679 -12.44794 -12.11259 -11.85722 -11.67885 -11.41155 -10.97547 -10.92558 -10.44686 -10.08242 -9.05666 -8.56537 -7.96212 -5.27338 -0.47844 0.00111 1.31079 1.49492 1.52652 1.57287 1.58798 2.04705 2.09200 2.45077 2.58451 3.23206 3.38191 3.47872 3.57235 3.67287 3.78205 3.86994 4.00230 4.15750 4.23570 4.36342 4.42890 4.52702 4.57531 4.60019 4.71138 4.92802 4.97482 5.12112 5.14321 5.15477 5.36966 5.45805 5.49689 5.55993 6.03822 6.24675 6.42515 6.76873 7.08031 7.31211 8.03370 8.25683 9.27196 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.042695 B = 0.002598 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.650943 B =10773.888634 C =11398.067268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.159 3.841 3 C -0.175 4.175 4 C 0.566 3.434 5 O -0.563 6.563 6 N -0.701 5.701 7 C 0.129 3.871 8 C 0.147 3.853 9 N -0.747 5.747 10 C -0.248 4.248 11 H 0.083 0.917 12 C -0.077 4.077 13 N -0.971 5.971 14 Si 0.978 3.022 15 H -0.275 1.275 16 H -0.298 1.298 17 H -0.275 1.275 18 C -0.104 4.104 19 C -0.078 4.078 20 C -0.011 4.011 21 C -0.027 4.027 22 N -0.480 5.480 23 C 0.149 3.851 24 N -0.382 5.382 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.416 0.584 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.374 0.626 34 H 0.252 0.748 35 H 0.169 0.831 36 H 0.186 0.814 37 H 0.206 0.794 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -24.256 0.419 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.054 3.946 3 C -0.181 4.181 4 C 0.354 3.646 5 O -0.444 6.444 6 N -0.353 5.353 7 C 0.005 3.995 8 C 0.021 3.979 9 N -0.390 5.390 10 C -0.379 4.379 11 H 0.101 0.899 12 C -0.269 4.269 13 N -0.621 5.621 14 Si 0.806 3.194 15 H -0.201 1.201 16 H -0.224 1.224 17 H -0.201 1.201 18 C -0.124 4.124 19 C -0.097 4.097 20 C -0.118 4.118 21 C -0.179 4.179 22 N -0.194 5.194 23 C -0.126 4.126 24 N -0.055 5.055 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.254 0.746 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.206 0.794 34 H 0.061 0.939 35 H 0.186 0.814 36 H 0.203 0.797 37 H 0.222 0.778 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.369 -25.055 0.483 26.121 hybrid contribution 0.113 1.904 -0.046 1.908 sum 7.482 -23.151 0.437 24.334 Atomic orbital electron populations 1.21306 0.85835 1.05265 1.05313 1.20538 0.96002 0.83030 0.94985 1.20140 0.94985 0.91205 1.11780 1.17879 0.86551 0.83777 0.76354 1.90754 1.14919 1.87415 1.51343 1.45524 1.11806 1.04659 1.73355 1.21202 0.94763 0.82002 1.01554 1.20862 0.93677 0.84109 0.99295 1.42409 1.06554 1.01333 1.88749 1.19604 0.92224 0.85046 1.41074 0.89891 1.25652 0.96460 1.01426 1.03360 1.69819 1.07147 1.26406 1.58706 0.85151 0.77126 0.78739 0.78356 1.20129 1.22410 1.20132 1.22332 0.90306 1.00201 0.99574 1.20792 1.01776 0.87756 0.99390 1.20231 0.82508 0.98078 1.10973 1.23084 0.98924 0.87007 1.08860 1.70003 0.98792 1.33848 1.16748 1.25759 1.01682 0.76117 1.09041 1.43106 1.07960 1.06629 1.47843 0.88944 0.87930 0.89107 0.74634 0.92304 0.92321 0.94347 0.94404 0.79392 0.93913 0.81411 0.79727 0.77750 0.74408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.55 71.24 0.61 -1.58 16 2 C 0.16 3.22 6.83 41.41 0.28 3.50 16 3 C -0.17 -3.61 5.98 -19.12 -0.11 -3.72 16 4 C 0.57 14.54 7.68 86.69 0.67 15.21 16 5 O -0.56 -17.90 13.22 -4.02 -0.05 -17.95 16 6 N -0.70 -16.71 5.51 -466.27 -2.57 -19.29 16 7 C 0.13 4.07 5.79 86.38 0.50 4.57 16 8 C 0.15 5.28 6.37 86.38 0.55 5.83 16 9 N -0.75 -36.72 5.60 -343.45 -1.92 -38.64 16 10 C -0.25 -13.38 9.99 84.03 0.84 -12.54 16 11 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 12 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 13 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 14 Si 0.98 44.92 29.55 68.60 2.03 46.94 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 C -0.10 -1.52 9.72 23.80 0.23 -1.29 16 19 C -0.08 -1.04 10.09 22.38 0.23 -0.81 16 20 C -0.01 -0.19 6.78 38.81 0.26 0.07 16 21 C -0.03 -0.48 12.00 84.37 1.01 0.53 16 22 N -0.48 -10.05 11.19 -197.51 -2.21 -12.26 16 23 C 0.15 2.65 12.09 179.91 2.17 4.82 16 24 N -0.38 -7.37 2.94 -336.61 -0.99 -8.36 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 2.33 5.78 -2.39 -0.01 2.32 16 27 H 0.09 1.12 7.15 -2.39 -0.02 1.10 16 28 H 0.42 7.15 6.61 -92.71 -0.61 6.54 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.37 19.93 7.67 -92.70 -0.71 19.21 16 34 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.17 1.48 6.63 -2.91 -0.02 1.47 16 36 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.24 2.45 7.55 -2.91 -0.02 2.42 16 Total: -1.00 -72.54 324.11 2.06 -70.49 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.21 Total: 26.98 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 7.71 Total: 10.74 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -7.41 Total: -137.20 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.54 2.06 -70.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130656045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.020 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds