Wall clock time and date at job start Tue Mar 31 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28457 * 124.15772 * 2 1 4 4 C 1.32147 * 111.38889 * 180.02562 * 3 2 1 5 5 C 1.40925 * 135.41274 * 179.97438 * 4 3 2 6 6 C 1.35826 * 119.54388 * 180.02562 * 5 4 3 7 7 C 1.39476 * 121.83652 * 0.02562 * 6 5 4 8 8 C 1.36076 * 121.57550 * 359.97150 * 7 6 5 9 9 C 1.40059 * 119.46575 * 0.04556 * 8 7 6 10 10 C 1.36193 * 124.15993 * 180.02562 * 2 1 3 11 11 C 1.46421 * 126.85590 * 359.97133 * 10 2 1 12 12 O 1.21730 * 120.00585 * 92.99284 * 11 10 2 13 13 N 1.34783 * 119.99850 * 273.00084 * 11 10 2 14 14 C 1.46497 * 120.00125 * 185.28984 * 13 11 10 15 15 C 1.52998 * 109.47079 * 179.97438 * 14 13 11 16 16 N 1.46507 * 109.47148 * 179.97438 * 15 14 13 17 17 C 1.36932 * 120.00016 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00375 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99877 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00203 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47352 * 89.99655 * 21 19 17 23 23 H 1.48497 * 109.47238 * 209.99683 * 21 19 17 24 24 H 1.48499 * 109.47524 * 329.99991 * 21 19 17 25 25 H 1.09001 * 109.47419 * 274.65341 * 1 2 3 26 26 H 1.09007 * 109.46863 * 34.65063 * 1 2 3 27 27 H 1.08997 * 109.47122 * 154.64870 * 1 2 3 28 28 H 1.08001 * 120.22998 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.08232 * 179.72008 * 6 5 4 30 30 H 1.08000 * 119.21496 * 179.97438 * 7 6 5 31 31 H 1.08000 * 120.26691 * 179.97438 * 8 7 6 32 32 H 0.97005 * 119.99974 * 5.28563 * 13 11 10 33 33 H 1.08995 * 109.47189 * 299.99965 * 14 13 11 34 34 H 1.09010 * 109.46997 * 59.99769 * 14 13 11 35 35 H 1.09003 * 109.47305 * 299.99928 * 15 14 13 36 36 H 1.08994 * 109.47166 * 60.00653 * 15 14 13 37 37 H 0.97005 * 119.99831 * 0.02562 * 16 15 14 38 38 H 0.97002 * 120.00281 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0630 0.0000 4 6 3.4750 0.7709 -0.0006 5 6 4.6725 1.5139 -0.0012 6 6 5.8646 0.8629 -0.0022 7 6 5.9424 -0.5296 -0.0031 8 6 4.8247 -1.3058 -0.0024 9 6 3.5633 -0.6971 -0.0018 10 6 2.2297 -1.1270 -0.0005 11 6 1.7534 -2.5115 -0.0005 12 8 1.6069 -3.1049 -1.0533 13 7 1.4769 -3.1291 1.1651 14 6 1.1121 -4.5479 1.1739 15 6 0.8514 -4.9985 2.6126 16 7 0.4861 -6.4173 2.6214 17 6 0.2061 -7.0449 3.8058 18 1 0.2541 -6.4940 4.7334 19 6 -0.1396 -8.3893 3.8141 20 7 -0.1987 -9.0606 2.6836 21 14 -0.5223 -9.2452 5.4297 22 1 -1.9734 -9.1258 5.7217 23 1 -0.1541 -10.6803 5.3290 24 1 0.2564 -8.6100 6.5231 25 1 -0.3634 0.0834 1.0243 26 1 -0.3633 0.8455 -0.5843 27 1 -0.3633 -0.9287 -0.4400 28 1 4.6425 2.5935 -0.0019 29 1 6.7776 1.4397 -0.0074 30 1 6.9130 -1.0034 -0.0042 31 1 4.9095 -2.3824 -0.0035 32 1 1.5194 -2.6341 1.9983 33 1 0.2116 -4.6952 0.5778 34 1 1.9276 -5.1353 0.7517 35 1 1.7522 -4.8512 3.2084 36 1 0.0362 -4.4113 3.0352 37 1 0.4433 -6.9122 1.7882 38 1 -0.4406 -9.9999 2.6894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146631364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:04 Heat of formation + Delta-G solvation = 78.107438 kcal Electronic energy + Delta-G solvation = -21567.753975 eV Core-core repulsion = 18219.474804 eV Total energy + Delta-G solvation = -3348.279171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68580 -39.48766 -37.90092 -35.83420 -33.98779 -33.05782 -32.23102 -31.27858 -29.81478 -28.00574 -27.53610 -24.30174 -23.36164 -22.59399 -22.23194 -21.56593 -19.83415 -18.14383 -17.70160 -17.31799 -16.75105 -16.46075 -15.80292 -15.30354 -14.97179 -14.61453 -14.36174 -14.20849 -13.81554 -13.55671 -13.45154 -13.29586 -13.26159 -12.95598 -12.07154 -11.95083 -11.92406 -11.57190 -11.20120 -10.93536 -10.85772 -10.52410 -10.49287 -10.24942 -10.13790 -9.81560 -9.17211 -8.95390 -8.87610 -7.93810 -7.06035 -5.84904 -3.16172 0.34374 1.45742 1.78097 2.16239 2.43739 3.04168 3.38967 3.44192 3.46086 3.63569 3.85924 4.28353 4.53979 4.61313 4.67591 4.73439 4.87783 4.96608 4.98683 5.17110 5.33231 5.38048 5.43098 5.50656 5.65268 5.81975 5.83905 6.00065 6.16042 6.24376 6.28156 6.38099 6.39484 6.58164 6.59648 6.71884 7.30329 7.60996 7.68028 7.94581 8.32341 9.43957 9.97335 10.32057 11.37546 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.002927 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.810902 B = 9562.507687 C =10010.017632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.218 5.218 3 N -0.289 5.289 4 C 0.059 3.941 5 C -0.080 4.080 6 C -0.098 4.098 7 C -0.129 4.129 8 C -0.061 4.061 9 C -0.125 4.125 10 C -0.019 4.019 11 C 0.589 3.411 12 O -0.517 6.517 13 N -0.705 5.705 14 C 0.109 3.891 15 C 0.145 3.855 16 N -0.729 5.729 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.387 0.613 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.504 21.980 -5.179 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.001 5.001 3 N -0.125 5.125 4 C -0.086 4.086 5 C -0.100 4.100 6 C -0.121 4.121 7 C -0.149 4.149 8 C -0.081 4.081 9 C -0.134 4.134 10 C -0.155 4.155 11 C 0.371 3.629 12 O -0.391 6.391 13 N -0.357 5.357 14 C -0.014 4.014 15 C 0.016 3.984 16 N -0.374 5.374 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.220 0.780 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.413 22.404 -5.770 24.007 hybrid contribution 0.192 -1.102 0.988 1.492 sum 6.606 21.302 -4.783 22.810 Atomic orbital electron populations 1.22469 0.72228 1.06327 1.05587 1.45731 1.08261 1.01678 1.44479 1.73427 1.03477 1.10649 1.24993 1.20596 0.91049 0.92255 1.04707 1.19870 0.88523 0.99122 1.02510 1.20627 0.97235 0.94542 0.99656 1.20672 0.98253 0.93676 1.02282 1.20125 0.89686 0.99808 0.98468 1.19349 0.91683 0.93916 1.08458 1.21078 0.91351 0.88792 1.14280 1.16711 0.77957 0.83697 0.84542 1.90914 1.50983 1.66048 1.31124 1.45962 1.68482 1.12704 1.08524 1.21726 1.01386 0.78518 0.99807 1.20753 0.97709 0.88209 0.91681 1.42175 1.83319 1.04276 1.07658 1.19179 1.39565 0.92676 0.86284 0.91004 1.24782 1.02158 0.96661 0.97106 1.69661 1.54389 1.09173 1.24571 0.86148 0.78066 0.78935 0.82747 1.21602 1.21640 1.20663 0.88382 0.87575 0.87999 0.85317 0.85459 0.85623 0.85658 0.76209 0.90694 0.90741 0.95603 0.95735 0.77957 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.12 59.84 0.67 1.22 16 2 N -0.22 -2.57 3.71 -63.76 -0.24 -2.80 16 3 N -0.29 -3.73 11.88 33.21 0.39 -3.34 16 4 C 0.06 0.76 7.52 -83.14 -0.63 0.13 16 5 C -0.08 -0.81 10.09 -39.43 -0.40 -1.21 16 6 C -0.10 -0.86 9.89 -39.98 -0.40 -1.26 16 7 C -0.13 -1.24 9.92 -39.90 -0.40 -1.64 16 8 C -0.06 -0.72 10.06 -39.68 -0.40 -1.11 16 9 C -0.13 -1.68 6.42 -104.93 -0.67 -2.36 16 10 C -0.02 -0.25 6.70 -81.93 -0.55 -0.80 16 11 C 0.59 8.51 6.85 -12.96 -0.09 8.42 16 12 O -0.52 -9.34 17.12 5.16 0.09 -9.25 16 13 N -0.71 -9.23 5.55 -61.70 -0.34 -9.57 16 14 C 0.11 1.74 5.79 -4.04 -0.02 1.71 16 15 C 0.14 2.69 6.37 -4.04 -0.03 2.66 16 16 N -0.73 -17.92 5.60 -59.91 -0.34 -18.26 16 17 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.11 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.10 0.76 7.56 -51.93 -0.39 0.37 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.40 4.36 8.46 -40.82 -0.35 4.02 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.39 10.05 7.67 -40.82 -0.31 9.74 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -34.34 334.92 -7.66 -42.01 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.82 Total: 7.77 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.15 Total: -1.49 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.20 Total: -60.98 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.34 -7.66 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146631364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.115 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds