Wall clock time and date at job start Tue Mar 31 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28457 * 124.15772 * 2 1 4 4 C 1.32147 * 111.38889 * 180.02562 * 3 2 1 5 5 C 1.40925 * 135.41274 * 179.97438 * 4 3 2 6 6 C 1.35826 * 119.54388 * 180.02562 * 5 4 3 7 7 C 1.39476 * 121.83652 * 0.02562 * 6 5 4 8 8 C 1.36076 * 121.57550 * 359.97150 * 7 6 5 9 9 C 1.40059 * 119.46575 * 0.04556 * 8 7 6 10 10 C 1.36193 * 124.15993 * 180.02562 * 2 1 3 11 11 C 1.46421 * 126.85590 * 359.97133 * 10 2 1 12 12 O 1.21730 * 120.00585 * 92.99284 * 11 10 2 13 13 N 1.34783 * 119.99850 * 273.00084 * 11 10 2 14 14 C 1.46497 * 120.00125 * 185.28984 * 13 11 10 15 15 C 1.52998 * 109.47079 * 179.97438 * 14 13 11 16 16 N 1.46507 * 109.47148 * 179.97438 * 15 14 13 17 17 C 1.36932 * 120.00016 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00375 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99877 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00203 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47352 * 89.99655 * 21 19 17 23 23 H 1.48497 * 109.47238 * 209.99683 * 21 19 17 24 24 H 1.48499 * 109.47524 * 329.99991 * 21 19 17 25 25 H 1.09001 * 109.47419 * 274.65341 * 1 2 3 26 26 H 1.09007 * 109.46863 * 34.65063 * 1 2 3 27 27 H 1.08997 * 109.47122 * 154.64870 * 1 2 3 28 28 H 1.08001 * 120.22998 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.08232 * 179.72008 * 6 5 4 30 30 H 1.08000 * 119.21496 * 179.97438 * 7 6 5 31 31 H 1.08000 * 120.26691 * 179.97438 * 8 7 6 32 32 H 0.97005 * 119.99974 * 5.28563 * 13 11 10 33 33 H 1.08995 * 109.47189 * 299.99965 * 14 13 11 34 34 H 1.09010 * 109.46997 * 59.99769 * 14 13 11 35 35 H 1.09003 * 109.47305 * 299.99928 * 15 14 13 36 36 H 1.08994 * 109.47166 * 60.00653 * 15 14 13 37 37 H 0.97005 * 119.99831 * 0.02562 * 16 15 14 38 38 H 0.97002 * 120.00281 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0630 0.0000 4 6 3.4750 0.7709 -0.0006 5 6 4.6725 1.5139 -0.0012 6 6 5.8646 0.8629 -0.0022 7 6 5.9424 -0.5296 -0.0031 8 6 4.8247 -1.3058 -0.0024 9 6 3.5633 -0.6971 -0.0018 10 6 2.2297 -1.1270 -0.0005 11 6 1.7534 -2.5115 -0.0005 12 8 1.6069 -3.1049 -1.0533 13 7 1.4769 -3.1291 1.1651 14 6 1.1121 -4.5479 1.1739 15 6 0.8514 -4.9985 2.6126 16 7 0.4861 -6.4173 2.6214 17 6 0.2061 -7.0449 3.8058 18 1 0.2541 -6.4940 4.7334 19 6 -0.1396 -8.3893 3.8141 20 7 -0.1987 -9.0606 2.6836 21 14 -0.5223 -9.2452 5.4297 22 1 -1.9734 -9.1258 5.7217 23 1 -0.1541 -10.6803 5.3290 24 1 0.2564 -8.6100 6.5231 25 1 -0.3634 0.0834 1.0243 26 1 -0.3633 0.8455 -0.5843 27 1 -0.3633 -0.9287 -0.4400 28 1 4.6425 2.5935 -0.0019 29 1 6.7776 1.4397 -0.0074 30 1 6.9130 -1.0034 -0.0042 31 1 4.9095 -2.3824 -0.0035 32 1 1.5194 -2.6341 1.9983 33 1 0.2116 -4.6952 0.5778 34 1 1.9276 -5.1353 0.7517 35 1 1.7522 -4.8512 3.2084 36 1 0.0362 -4.4113 3.0352 37 1 0.4433 -6.9122 1.7882 38 1 -0.4406 -9.9999 2.6894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146631364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:03 Heat of formation + Delta-G solvation = 53.526040 kcal Electronic energy + Delta-G solvation = -21568.819904 eV Core-core repulsion = 18219.474804 eV Total energy + Delta-G solvation = -3349.345100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.57484 -40.70259 -38.68386 -37.39551 -35.62104 -33.90196 -33.32556 -32.85650 -30.80789 -29.37933 -28.44255 -25.91983 -24.50118 -23.57656 -23.28930 -22.96142 -20.89732 -19.40670 -19.01231 -18.49272 -17.76043 -17.36699 -16.98023 -16.54001 -16.50676 -16.02648 -15.30105 -15.23995 -15.10461 -15.07357 -14.74445 -14.41740 -14.22809 -13.88908 -13.15431 -13.05943 -12.81200 -12.73833 -12.69054 -12.65839 -12.57090 -12.09704 -11.90517 -11.55777 -11.39943 -11.24894 -11.00390 -10.37804 -9.68898 -9.07379 -8.80123 -7.97426 -5.28729 -0.50678 0.61516 0.82331 1.26744 1.40347 1.49341 1.50793 1.59376 1.95868 2.56673 2.82421 3.03794 3.29037 3.37187 3.84397 3.93969 3.94994 4.10538 4.13709 4.16189 4.18411 4.22383 4.39077 4.45618 4.54353 4.56402 4.81768 4.90542 5.05587 5.09399 5.17261 5.32285 5.48366 5.48794 5.55001 5.61652 5.97741 6.18564 6.23402 6.77311 6.82017 7.30217 8.01289 8.24117 9.26088 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.002927 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.810902 B = 9562.507687 C =10010.017632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.213 5.213 3 N -0.296 5.296 4 C 0.036 3.964 5 C -0.087 4.087 6 C -0.094 4.094 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.141 4.141 10 C -0.043 4.043 11 C 0.602 3.398 12 O -0.558 6.558 13 N -0.689 5.689 14 C 0.126 3.874 15 C 0.149 3.851 16 N -0.746 5.746 17 C -0.248 4.248 18 H 0.082 0.918 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.266 1.266 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.121 0.879 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.375 0.625 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 24.027 -3.961 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N 0.003 4.997 3 N -0.134 5.134 4 C -0.108 4.108 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.134 4.134 8 C -0.115 4.115 9 C -0.150 4.150 10 C -0.179 4.179 11 C 0.385 3.615 12 O -0.435 6.435 13 N -0.341 5.341 14 C 0.002 3.998 15 C 0.022 3.978 16 N -0.390 5.390 17 C -0.380 4.380 18 H 0.100 0.900 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.191 1.191 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.117 0.883 28 H 0.168 0.832 29 H 0.183 0.817 30 H 0.171 0.829 31 H 0.139 0.861 32 H 0.254 0.746 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.207 0.793 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.443 24.519 -4.505 26.016 hybrid contribution -0.043 -1.589 0.589 1.695 sum 7.400 22.930 -3.916 24.410 Atomic orbital electron populations 1.22819 0.70234 1.07019 1.07452 1.46038 1.09362 1.00888 1.43441 1.73377 1.03832 1.11024 1.25172 1.21073 0.91796 0.92393 1.05500 1.20276 0.88043 1.00296 1.02156 1.21064 0.98206 0.94383 0.97892 1.21095 0.98662 0.94234 0.99428 1.20289 0.90114 1.00069 1.00998 1.19671 0.92164 0.94614 1.08506 1.20802 0.91880 0.88392 1.16857 1.16760 0.76798 0.84029 0.83897 1.90889 1.52843 1.67192 1.32583 1.45706 1.67807 1.11515 1.09054 1.21333 1.00599 0.79838 0.98018 1.20838 0.98292 0.85399 0.93287 1.42392 1.83489 1.06540 1.06531 1.19626 1.37877 0.93006 0.87466 0.89964 1.25638 1.03093 0.97662 1.00319 1.69823 1.56292 1.09111 1.26753 0.85090 0.77872 0.77253 0.79209 1.21289 1.22340 1.19107 0.86076 0.85766 0.88281 0.83200 0.81750 0.82934 0.86089 0.74559 0.91518 0.91975 0.94557 0.94204 0.79297 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 11.12 127.77 1.42 2.30 16 2 N -0.21 -4.89 3.71 -355.62 -1.32 -6.21 16 3 N -0.30 -7.40 11.88 -48.86 -0.58 -7.98 16 4 C 0.04 0.90 7.52 42.07 0.32 1.21 16 5 C -0.09 -1.59 10.09 22.37 0.23 -1.37 16 6 C -0.09 -1.36 9.89 22.01 0.22 -1.14 16 7 C -0.12 -1.95 9.92 22.07 0.22 -1.73 16 8 C -0.09 -2.19 10.06 22.21 0.22 -1.96 16 9 C -0.14 -3.76 6.42 -20.07 -0.13 -3.88 16 10 C -0.04 -1.15 6.70 41.05 0.28 -0.88 16 11 C 0.60 17.61 6.85 86.37 0.59 18.21 16 12 O -0.56 -20.80 17.12 -4.44 -0.08 -20.88 16 13 N -0.69 -17.77 5.55 -467.31 -2.59 -20.36 16 14 C 0.13 4.03 5.79 86.38 0.50 4.53 16 15 C 0.15 5.39 6.37 86.38 0.55 5.94 16 16 N -0.75 -36.68 5.60 -343.45 -1.92 -38.60 16 17 C -0.25 -13.42 9.99 84.03 0.84 -12.58 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 20 N -0.97 -58.79 13.06 21.65 0.28 -58.50 16 21 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.10 1.44 7.56 -2.39 -0.02 1.43 16 28 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 29 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 31 H 0.12 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.42 8.55 8.46 -92.70 -0.78 7.77 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.16 8.14 -2.38 -0.02 2.15 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.38 19.91 7.67 -92.70 -0.71 19.20 16 38 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -74.43 334.92 1.14 -73.30 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.40 Total: 27.31 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 5.72 Total: 4.91 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -6.13 Total: -131.66 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.08 Total: -20.88 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.43 1.14 -73.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146631364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.822 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds