Wall clock time and date at job start Tue Mar 31 2020 03:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31649 * 1 3 3 Si 1.86799 * 120.00502 * 2 1 4 4 H 1.48494 * 109.47226 * 239.99932 * 3 2 1 5 5 H 1.48502 * 109.46614 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46927 * 119.99953 * 3 2 1 7 7 C 1.38654 * 119.99495 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99828 * 180.02562 * 7 2 1 9 9 N 1.36914 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.37746 * 119.99987 * 185.13542 * 9 7 2 11 11 C 1.36469 * 119.81288 * 354.19303 * 10 9 7 12 12 C 1.39786 * 120.17615 * 180.02562 * 11 10 9 13 13 C 1.36423 * 119.81732 * 359.97438 * 12 11 10 14 14 C 1.40763 * 119.54992 * 0.02562 * 13 12 11 15 15 N 1.32622 * 132.30432 * 179.97438 * 14 13 12 16 16 C 1.33528 * 109.20504 * 180.02562 * 15 14 13 17 17 C 1.50699 * 125.67357 * 180.02562 * 16 15 14 18 18 H 1.09006 * 109.51087 * 184.97966 * 17 16 15 19 19 C 1.53103 * 109.50478 * 305.05764 * 17 16 15 20 20 N 1.47017 * 109.25772 * 176.78283 * 19 17 16 21 21 C 1.47013 * 110.75443 * 301.38703 * 20 19 17 22 22 C 1.53100 * 109.25636 * 58.61309 * 21 20 19 23 23 O 1.43006 * 109.29755 * 303.17631 * 22 21 20 24 24 C 1.35090 * 108.65759 * 0.02562 * 16 15 14 25 25 N 1.36984 * 119.81354 * 174.21776 * 10 9 7 26 26 H 0.97003 * 119.99629 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99760 * 5.13377 * 9 7 2 28 28 H 1.07999 * 119.91255 * 0.02562 * 11 10 9 29 29 H 1.07992 * 120.09156 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.22274 * 179.72333 * 13 12 11 31 31 H 1.08991 * 109.50871 * 296.72169 * 19 17 16 32 32 H 1.09004 * 109.50257 * 56.85523 * 19 17 16 33 33 H 1.00898 * 110.99952 * 65.16505 * 20 19 17 34 34 H 1.08999 * 109.50904 * 178.54782 * 21 20 19 35 35 H 1.09001 * 109.50844 * 298.68070 * 21 20 19 36 36 H 1.09008 * 109.50197 * 63.09103 * 22 21 20 37 37 H 1.09003 * 109.50700 * 183.17231 * 22 21 20 38 38 H 1.07999 * 126.42324 * 179.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2506 1.6176 0.0000 4 1 3.1044 1.6962 -1.2124 5 1 1.2856 2.7464 0.0006 6 1 3.1044 1.6962 1.2125 7 6 2.0096 -1.2008 -0.0005 8 1 3.0897 -1.2009 -0.0001 9 7 1.3250 -2.3865 -0.0016 10 6 2.0095 -3.5771 0.1046 11 6 3.3741 -3.5788 0.0912 12 6 4.0764 -4.7827 0.1980 13 6 3.3939 -5.9579 0.3164 14 6 1.9864 -5.9451 0.3292 15 7 1.0858 -6.9134 0.4298 16 6 -0.1381 -6.3807 0.3911 17 6 -1.4330 -7.1467 0.4768 18 1 -2.2702 -6.4640 0.3304 19 6 -1.4600 -8.2281 -0.6067 20 7 -2.6901 -9.0214 -0.4695 21 6 -2.7652 -9.6400 0.8620 22 6 -2.7252 -8.5444 1.9307 23 8 -1.5390 -7.7635 1.7627 24 6 -0.0224 -5.0409 0.2623 25 7 1.3166 -4.7529 0.2227 26 1 -0.4850 0.8401 -0.0004 27 1 0.3580 -2.3881 -0.0771 28 1 3.9129 -2.6474 -0.0022 29 1 5.1563 -4.7823 0.1876 30 1 3.9298 -6.8923 0.3948 31 1 -1.4374 -7.7587 -1.5901 32 1 -0.5928 -8.8787 -0.4932 33 1 -3.5064 -8.4575 -0.6528 34 1 -3.6955 -10.2011 0.9508 35 1 -1.9189 -10.3131 0.9990 36 1 -3.6004 -7.9028 1.8271 37 1 -2.7239 -9.0012 2.9204 38 1 -0.8332 -4.3301 0.2022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:23 Heat of formation + Delta-G solvation = 36.634178 kcal Electronic energy + Delta-G solvation = -22380.875940 eV Core-core repulsion = 19030.798354 eV Total energy + Delta-G solvation = -3350.077586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.56776 -40.58602 -39.03872 -36.62081 -35.51808 -34.55488 -33.54444 -32.44576 -30.02232 -28.95236 -27.34325 -26.83518 -25.15492 -23.64595 -23.08590 -22.22534 -21.34270 -20.14291 -18.79965 -17.89932 -17.56887 -17.27805 -17.02532 -16.65412 -16.38125 -16.18903 -15.83796 -15.71412 -15.42374 -15.16584 -14.86909 -13.91596 -13.67542 -13.63895 -13.50543 -13.20938 -12.79839 -12.63072 -12.50414 -12.37369 -12.17827 -12.09363 -12.04429 -11.74064 -11.54715 -11.20468 -11.04635 -10.51617 -9.61703 -9.17588 -8.68752 -8.15198 -5.96509 0.29468 0.60747 1.39223 1.46504 1.51454 1.62722 1.83159 2.21023 2.72865 2.87640 3.05551 3.13418 3.16913 3.38338 3.72839 3.77279 3.98152 4.10545 4.14461 4.21890 4.35029 4.41728 4.51723 4.64627 4.68372 4.75998 4.90503 4.95219 5.02785 5.06889 5.24166 5.45378 5.55098 5.70391 5.78271 5.81652 5.94928 6.15211 6.25403 6.35979 6.61382 6.97639 7.17182 7.28087 8.47954 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.003984 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.121451 B = 7026.708204 C = 7970.688848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.017 4.017 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.321 4.321 8 H 0.124 0.876 9 N -0.552 5.552 10 C 0.350 3.650 11 C -0.319 4.319 12 C 0.005 3.995 13 C -0.246 4.246 14 C 0.270 3.730 15 N -0.530 5.530 16 C 0.052 3.948 17 C 0.147 3.853 18 H 0.082 0.918 19 C 0.048 3.952 20 N -0.681 5.681 21 C 0.024 3.976 22 C 0.015 3.985 23 O -0.398 6.398 24 C -0.126 4.126 25 N -0.397 5.397 26 H 0.282 0.718 27 H 0.393 0.607 28 H 0.145 0.855 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.352 0.648 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -9.403 0.232 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.450 4.450 8 H 0.141 0.859 9 N -0.156 5.156 10 C 0.129 3.871 11 C -0.349 4.349 12 C -0.020 4.020 13 C -0.271 4.271 14 C 0.026 3.974 15 N -0.252 5.252 16 C -0.081 4.081 17 C 0.087 3.913 18 H 0.100 0.900 19 C -0.082 4.082 20 N -0.310 5.310 21 C -0.106 4.106 22 C -0.062 4.062 23 O -0.318 6.318 24 C -0.255 4.255 25 N -0.076 5.076 26 H 0.092 0.908 27 H 0.227 0.773 28 H 0.162 0.838 29 H 0.183 0.817 30 H 0.167 0.833 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.859 -10.314 0.120 10.703 hybrid contribution -1.039 2.563 0.375 2.791 sum -3.898 -7.751 0.495 8.690 Atomic orbital electron populations 1.69807 1.07663 1.30237 1.47684 1.26372 0.96586 1.03442 0.95474 0.84723 0.77527 0.74879 0.79826 1.18341 1.20631 1.18628 1.20144 0.94091 0.81672 1.49091 0.85886 1.40714 1.08701 1.02185 1.64040 1.17912 0.90523 0.78158 1.00485 1.19936 0.88771 1.00710 1.25523 1.20882 1.00919 0.89617 0.90537 1.19799 0.86980 1.00506 1.19795 1.21400 0.95343 0.78936 1.01764 1.70567 0.98589 1.29002 1.27020 1.20342 0.93767 0.89902 1.04064 1.20867 0.91214 0.93488 0.85754 0.90014 1.22375 0.94068 0.94001 0.97771 1.60899 1.04526 1.36463 1.29128 1.22720 1.04583 0.96634 0.86639 1.23556 0.87053 0.93635 1.02000 1.88147 1.43926 1.67066 1.32622 1.22301 0.84691 0.98007 1.20537 1.42880 1.07092 1.07386 1.50233 0.90847 0.77258 0.83794 0.81715 0.83334 0.89437 0.91222 0.82960 0.86585 0.91099 0.91724 0.86951 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.38 13.06 21.62 0.28 -46.10 16 2 C -0.02 -0.81 5.50 84.82 0.47 -0.35 16 3 Si 1.01 37.01 29.55 68.60 2.03 39.04 16 4 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.32 -15.34 9.51 84.00 0.80 -14.54 16 8 H 0.12 5.44 5.63 -2.91 -0.02 5.42 16 9 N -0.55 -26.39 5.37 -189.06 -1.02 -27.41 16 10 C 0.35 15.74 7.53 131.43 0.99 16.73 16 11 C -0.32 -12.75 9.24 22.23 0.21 -12.54 16 12 C 0.00 0.16 10.05 22.22 0.22 0.38 16 13 C -0.25 -9.15 10.10 22.46 0.23 -8.92 16 14 C 0.27 11.75 7.81 134.02 1.05 12.79 16 15 N -0.53 -23.10 11.28 -182.44 -2.06 -25.15 16 16 C 0.05 2.06 5.96 41.58 0.25 2.31 16 17 C 0.15 4.62 3.29 29.88 0.10 4.71 16 18 H 0.08 2.24 8.10 -2.38 -0.02 2.22 16 19 C 0.05 1.34 6.01 86.32 0.52 1.86 16 20 N -0.68 -14.54 6.93 -512.98 -3.55 -18.09 16 21 C 0.02 0.45 6.76 86.32 0.58 1.03 16 22 C 0.02 0.32 7.00 72.02 0.50 0.83 16 23 O -0.40 -12.95 10.45 -148.98 -1.56 -14.50 16 24 C -0.13 -5.22 11.15 83.16 0.93 -4.29 16 25 N -0.40 -17.60 2.97 -349.74 -1.04 -18.64 16 26 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 27 H 0.39 19.44 7.25 -92.71 -0.67 18.77 16 28 H 0.14 5.48 5.85 -2.91 -0.02 5.47 16 29 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.15 4.80 8.06 -2.91 -0.02 4.77 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.29 8.13 -2.38 -0.02 2.27 16 33 H 0.35 5.99 8.89 -89.70 -0.80 5.19 16 34 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 38 H 0.18 6.64 7.81 -2.91 -0.02 6.61 16 Total: -1.00 -61.08 317.65 -0.43 -61.51 By element: Atomic # 1 Polarization: 49.70 SS G_CDS: -0.36 Total: 49.34 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.84 Total: 0.00 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -7.38 Total: -135.39 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.56 Total: -14.50 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -61.08 -0.43 -61.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.147 kcal (2) G-P(sol) polarization free energy of solvation -61.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds