Wall clock time and date at job start Tue Mar 31 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30597 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48501 * 109.46993 * 270.27342 * 3 2 1 5 5 H 1.48498 * 109.47479 * 30.27260 * 3 2 1 6 6 H 1.48497 * 109.47319 * 150.27568 * 3 2 1 7 7 C 1.40352 * 119.99778 * 180.27546 * 2 1 3 8 8 H 1.07999 * 119.99952 * 163.48529 * 7 2 1 9 9 C 1.40173 * 119.99982 * 343.47928 * 7 2 1 10 10 C 1.39066 * 119.74319 * 155.98683 * 9 7 2 11 11 C 1.42028 * 118.74784 * 179.78145 * 10 9 7 12 12 N 1.32208 * 120.83996 * 180.24095 * 11 10 9 13 13 C 1.46500 * 120.00478 * 180.27194 * 12 11 10 14 14 C 1.49628 * 107.29866 * 276.61622 * 13 12 11 15 15 C 1.54315 * 103.57897 * 283.09770 * 14 13 12 16 16 N 1.50056 * 106.00578 * 354.75321 * 15 14 13 17 17 C 1.45382 * 103.34017 * 332.36562 * 16 15 14 18 18 H 1.09000 * 112.35705 * 288.33800 * 17 16 15 19 19 C 1.52328 * 123.18454 * 150.92921 * 17 16 15 20 20 C 1.53716 * 100.85918 * 213.68061 * 19 17 16 21 21 O 1.21286 * 125.67810 * 203.85180 * 20 19 17 22 22 N 1.37437 * 108.64679 * 23.88496 * 20 19 17 23 23 C 1.46924 * 118.33052 * 0.50797 * 11 10 9 24 24 C 1.34376 * 119.36669 * 359.73424 * 23 11 10 25 25 N 1.36426 * 121.22440 * 359.97438 * 24 23 11 26 26 H 0.96996 * 119.09236 * 180.02562 * 25 24 23 27 27 H 0.96996 * 119.99458 * 359.72850 * 1 2 3 28 28 H 1.07998 * 120.63160 * 0.02562 * 10 9 7 29 29 H 1.09007 * 110.75545 * 41.00446 * 14 13 12 30 30 H 1.08993 * 110.75850 * 164.36819 * 14 13 12 31 31 H 1.09003 * 110.07059 * 235.69988 * 15 14 13 32 32 H 1.08995 * 110.36686 * 113.97069 * 15 14 13 33 33 H 1.00894 * 111.00448 * 213.31646 * 16 15 14 34 34 H 1.08994 * 111.14416 * 95.77668 * 19 17 16 35 35 H 1.09009 * 111.13774 * 331.57740 * 19 17 16 36 36 H 0.96994 * 126.20367 * 187.77254 * 22 20 19 37 37 H 1.07994 * 120.31792 * 179.75651 * 23 11 10 38 38 H 1.08001 * 119.38692 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4816 2.0497 -1.4001 5 1 1.4403 2.6510 0.7058 6 1 3.5404 1.4385 0.6942 7 6 2.0077 -1.2155 -0.0058 8 1 3.0542 -1.2335 -0.2718 9 6 1.3502 -2.4060 0.3336 10 6 1.8410 -3.6217 -0.1302 11 6 1.1609 -4.8153 0.2305 12 7 1.5942 -5.9937 -0.1835 13 6 0.8752 -7.2128 0.1946 14 6 1.3518 -7.6060 1.5574 15 6 2.7317 -8.2425 1.2889 16 7 2.8840 -8.2861 -0.2033 17 6 1.5122 -8.3634 -0.6784 18 1 1.0595 -9.3353 -0.4820 19 6 1.0634 -7.8084 -2.0241 20 6 -0.3623 -7.3444 -1.6851 21 8 -1.2692 -7.2075 -2.4788 22 7 -0.4382 -7.1097 -0.3331 23 6 -0.0397 -4.7070 1.0703 24 6 -0.4541 -3.4943 1.4745 25 7 0.2196 -2.3623 1.1199 26 1 -0.1066 -1.5029 1.4293 27 1 -0.4849 0.8400 0.0040 28 1 2.7249 -3.6579 -0.7497 29 1 1.4633 -6.7292 2.1955 30 1 0.6745 -8.3304 2.0094 31 1 2.7640 -9.2522 1.6986 32 1 3.5221 -7.6344 1.7288 33 1 3.4119 -9.0969 -0.4894 34 1 1.0525 -8.5871 -2.7866 35 1 1.6875 -6.9690 -2.3310 36 1 -1.2435 -6.9100 0.1694 37 1 -0.5839 -5.5937 1.3604 38 1 -1.3369 -3.4144 2.0915 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163252170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:10 Heat of formation + Delta-G solvation = 57.285274 kcal Electronic energy + Delta-G solvation = -23198.619374 eV Core-core repulsion = 19849.437287 eV Total energy + Delta-G solvation = -3349.182088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79329 -38.49646 -37.54350 -34.77762 -34.04409 -32.83560 -30.93651 -30.41101 -28.89837 -27.64297 -26.14098 -24.91889 -21.66629 -21.48242 -20.55770 -20.04447 -19.37127 -17.97704 -17.01946 -16.59504 -16.43384 -15.63067 -15.13982 -14.79972 -14.25118 -14.09164 -13.89152 -13.43831 -13.12260 -13.02612 -12.84875 -12.79427 -12.23596 -11.99500 -11.58623 -11.49978 -11.34769 -11.23098 -11.05739 -10.91987 -10.68352 -10.37690 -10.06682 -9.71922 -9.64316 -9.40509 -8.72870 -8.25947 -8.14222 -7.39437 -7.29681 -6.02832 -4.80546 2.57904 2.69375 2.87200 2.91843 3.05136 3.12922 3.63655 3.74942 4.12876 4.28633 4.58754 4.86327 5.08525 5.19469 5.27303 5.38422 5.42573 5.55137 5.72867 5.80713 5.83190 6.06825 6.17680 6.21797 6.28678 6.50514 6.56546 6.68516 6.73946 6.83182 7.07998 7.36538 7.43259 7.50089 7.64553 7.72976 7.75526 7.96286 8.22780 8.27054 8.77022 8.78884 8.88676 9.66653 9.69723 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.023502 B = 0.004586 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.084256 B = 6103.766453 C = 6384.681039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.077 3.923 3 Si 0.923 3.077 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.103 0.897 9 C 0.330 3.670 10 C -0.353 4.353 11 C 0.291 3.709 12 N -0.642 5.642 13 C 0.302 3.698 14 C -0.112 4.112 15 C 0.060 3.940 16 N -0.613 5.613 17 C 0.047 3.953 18 H 0.045 0.955 19 C -0.110 4.110 20 C 0.537 3.463 21 O -0.542 6.542 22 N -0.724 5.724 23 C -0.295 4.295 24 C 0.124 3.876 25 N -0.600 5.600 26 H 0.413 0.587 27 H 0.292 0.708 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.322 0.678 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.395 0.605 37 H 0.107 0.893 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.027 -6.817 5.840 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.142 4.142 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.499 4.499 8 H 0.121 0.879 9 C 0.221 3.779 10 C -0.382 4.382 11 C 0.129 3.871 12 N -0.371 5.371 13 C 0.123 3.877 14 C -0.152 4.152 15 C -0.069 4.069 16 N -0.240 5.240 17 C -0.066 4.066 18 H 0.063 0.937 19 C -0.151 4.151 20 C 0.324 3.676 21 O -0.417 6.417 22 N -0.382 5.382 23 C -0.326 4.326 24 C -0.006 4.006 25 N -0.210 5.210 26 H 0.253 0.747 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.234 0.766 37 H 0.125 0.875 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.240 -6.433 4.715 8.072 hybrid contribution -1.475 0.286 1.235 1.945 sum -0.235 -6.147 5.949 8.558 Atomic orbital electron populations 1.69357 1.07827 1.30884 1.36020 1.26202 0.94924 1.02421 0.90645 0.86034 0.80500 0.78982 0.79856 1.18895 1.19909 1.17954 1.19507 0.99116 0.89528 1.41727 0.87898 1.17647 0.81501 0.94476 0.84239 1.20215 1.10121 0.88106 1.19742 1.20151 0.87523 0.93033 0.86378 1.73958 1.32015 0.94878 1.36260 1.20596 0.78726 0.95969 0.92436 1.21685 0.96274 1.00853 0.96389 1.22920 0.97035 0.97997 0.88921 1.62897 1.10776 1.43784 1.06529 1.22801 0.91098 0.95669 0.97052 0.93723 1.22098 0.93651 1.02777 0.96580 1.22277 0.89673 0.74204 0.81415 1.90658 1.44933 1.53603 1.52551 1.46243 1.09698 1.73060 1.09156 1.22377 1.04044 0.95153 1.10978 1.21267 0.95122 0.87610 0.96640 1.42046 1.25553 1.08484 1.44911 0.74748 0.89666 0.86805 0.90240 0.92622 0.94704 0.90039 0.86354 0.90524 0.85458 0.76569 0.87524 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.77 11.15 55.57 0.62 -17.15 16 2 C 0.08 1.65 5.18 -17.28 -0.09 1.56 16 3 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 7 C -0.47 -10.88 9.03 -38.06 -0.34 -11.22 16 8 H 0.10 2.35 7.90 -52.49 -0.41 1.93 16 9 C 0.33 7.87 6.35 -84.16 -0.53 7.34 16 10 C -0.35 -8.69 9.83 -37.82 -0.37 -9.06 16 11 C 0.29 6.66 6.33 -82.74 -0.52 6.14 16 12 N -0.64 -13.79 7.53 -48.40 -0.36 -14.16 16 13 C 0.30 5.36 1.11 -195.30 -0.22 5.14 16 14 C -0.11 -1.72 5.94 -27.71 -0.16 -1.88 16 15 C 0.06 0.84 7.42 -1.37 -0.01 0.83 16 16 N -0.61 -9.35 6.96 -102.14 -0.71 -10.06 16 17 C 0.05 0.75 3.78 -66.22 -0.25 0.50 16 18 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 19 C -0.11 -1.95 6.40 -26.70 -0.17 -2.12 16 20 C 0.54 10.81 8.29 -8.24 -0.07 10.74 16 21 O -0.54 -12.57 18.03 5.55 0.10 -12.47 16 22 N -0.72 -13.14 4.80 -50.44 -0.24 -13.39 16 23 C -0.29 -5.91 8.33 -37.43 -0.31 -6.22 16 24 C 0.12 2.35 11.15 -16.87 -0.19 2.16 16 25 N -0.60 -12.75 4.88 -10.83 -0.05 -12.81 16 26 H 0.41 8.46 6.40 -40.82 -0.26 8.20 16 27 H 0.29 5.78 8.29 -40.82 -0.34 5.44 16 28 H 0.11 2.90 8.06 -52.49 -0.42 2.48 16 29 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.32 4.01 8.91 -39.29 -0.35 3.66 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.13 2.55 7.41 -51.92 -0.38 2.17 16 36 H 0.40 6.64 7.69 -40.82 -0.31 6.33 16 37 H 0.11 1.91 5.48 -52.49 -0.29 1.63 16 38 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -27.92 309.70 -8.75 -36.67 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -4.49 Total: 23.53 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -3.24 Total: 3.90 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -0.75 Total: -67.56 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.10 Total: -12.47 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.92 -8.75 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.953 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds