Wall clock time and date at job start Tue Mar 31 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30597 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48501 * 109.46993 * 270.27342 * 3 2 1 5 5 H 1.48498 * 109.47479 * 30.27260 * 3 2 1 6 6 H 1.48497 * 109.47319 * 150.27568 * 3 2 1 7 7 C 1.40352 * 119.99778 * 180.27546 * 2 1 3 8 8 H 1.07999 * 119.99952 * 163.48529 * 7 2 1 9 9 C 1.40173 * 119.99982 * 343.47928 * 7 2 1 10 10 C 1.39066 * 119.74319 * 155.98683 * 9 7 2 11 11 C 1.42028 * 118.74784 * 179.78145 * 10 9 7 12 12 N 1.32208 * 120.83996 * 180.24095 * 11 10 9 13 13 C 1.46500 * 120.00478 * 180.27194 * 12 11 10 14 14 C 1.49628 * 107.29866 * 276.61622 * 13 12 11 15 15 C 1.54315 * 103.57897 * 283.09770 * 14 13 12 16 16 N 1.50056 * 106.00578 * 354.75321 * 15 14 13 17 17 C 1.45382 * 103.34017 * 332.36562 * 16 15 14 18 18 H 1.09000 * 112.35705 * 288.33800 * 17 16 15 19 19 C 1.52328 * 123.18454 * 150.92921 * 17 16 15 20 20 C 1.53716 * 100.85918 * 213.68061 * 19 17 16 21 21 O 1.21286 * 125.67810 * 203.85180 * 20 19 17 22 22 N 1.37437 * 108.64679 * 23.88496 * 20 19 17 23 23 C 1.46924 * 118.33052 * 0.50797 * 11 10 9 24 24 C 1.34376 * 119.36669 * 359.73424 * 23 11 10 25 25 N 1.36426 * 121.22440 * 359.97438 * 24 23 11 26 26 H 0.96996 * 119.09236 * 180.02562 * 25 24 23 27 27 H 0.96996 * 119.99458 * 359.72850 * 1 2 3 28 28 H 1.07998 * 120.63160 * 0.02562 * 10 9 7 29 29 H 1.09007 * 110.75545 * 41.00446 * 14 13 12 30 30 H 1.08993 * 110.75850 * 164.36819 * 14 13 12 31 31 H 1.09003 * 110.07059 * 235.69988 * 15 14 13 32 32 H 1.08995 * 110.36686 * 113.97069 * 15 14 13 33 33 H 1.00894 * 111.00448 * 213.31646 * 16 15 14 34 34 H 1.08994 * 111.14416 * 95.77668 * 19 17 16 35 35 H 1.09009 * 111.13774 * 331.57740 * 19 17 16 36 36 H 0.96994 * 126.20367 * 187.77254 * 22 20 19 37 37 H 1.07994 * 120.31792 * 179.75651 * 23 11 10 38 38 H 1.08001 * 119.38692 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4816 2.0497 -1.4001 5 1 1.4403 2.6510 0.7058 6 1 3.5404 1.4385 0.6942 7 6 2.0077 -1.2155 -0.0058 8 1 3.0542 -1.2335 -0.2718 9 6 1.3502 -2.4060 0.3336 10 6 1.8410 -3.6217 -0.1302 11 6 1.1609 -4.8153 0.2305 12 7 1.5942 -5.9937 -0.1835 13 6 0.8752 -7.2128 0.1946 14 6 1.3518 -7.6060 1.5574 15 6 2.7317 -8.2425 1.2889 16 7 2.8840 -8.2861 -0.2033 17 6 1.5122 -8.3634 -0.6784 18 1 1.0595 -9.3353 -0.4820 19 6 1.0634 -7.8084 -2.0241 20 6 -0.3623 -7.3444 -1.6851 21 8 -1.2692 -7.2075 -2.4788 22 7 -0.4382 -7.1097 -0.3331 23 6 -0.0397 -4.7070 1.0703 24 6 -0.4541 -3.4943 1.4745 25 7 0.2196 -2.3623 1.1199 26 1 -0.1066 -1.5029 1.4293 27 1 -0.4849 0.8400 0.0040 28 1 2.7249 -3.6579 -0.7497 29 1 1.4633 -6.7292 2.1955 30 1 0.6745 -8.3304 2.0094 31 1 2.7640 -9.2522 1.6986 32 1 3.5221 -7.6344 1.7288 33 1 3.4119 -9.0969 -0.4894 34 1 1.0525 -8.5871 -2.7866 35 1 1.6875 -6.9690 -2.3310 36 1 -1.2435 -6.9100 0.1694 37 1 -0.5839 -5.5937 1.3604 38 1 -1.3369 -3.4144 2.0915 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163252170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:10 Heat of formation + Delta-G solvation = 35.563378 kcal Electronic energy + Delta-G solvation = -23199.561306 eV Core-core repulsion = 19849.437287 eV Total energy + Delta-G solvation = -3350.124020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22622 -40.14680 -39.08469 -36.28087 -35.62811 -34.45422 -32.48851 -31.92918 -30.37765 -29.11668 -27.79967 -26.32641 -23.28717 -23.03608 -21.84159 -21.56533 -20.87392 -19.61152 -18.53452 -18.20019 -17.94688 -17.13226 -16.70244 -16.23453 -15.79452 -15.45122 -15.41628 -14.89264 -14.66697 -14.52889 -14.44137 -14.21059 -13.65397 -13.44191 -13.15928 -12.87187 -12.80286 -12.71164 -12.55159 -12.34147 -12.15574 -11.88201 -11.55677 -11.31504 -11.26876 -11.02374 -10.24207 -9.94390 -9.27665 -9.00185 -8.93342 -7.69331 -6.60012 0.98194 1.11882 1.41457 1.45921 1.53262 1.62695 2.15987 2.29572 2.63083 2.80511 2.95786 3.50802 3.66888 3.77837 3.99616 4.07344 4.16856 4.19154 4.41381 4.51958 4.63765 4.67855 4.79289 4.85254 4.98559 5.01546 5.07051 5.11012 5.21960 5.24433 5.68436 5.81326 5.85124 5.98595 6.05325 6.07616 6.15311 6.53033 6.54029 6.67365 7.05335 7.21078 7.27440 8.02411 8.05937 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.023502 B = 0.004586 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.084256 B = 6103.766453 C = 6384.681039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.049 3.951 3 Si 0.993 3.007 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.257 1.257 7 C -0.497 4.497 8 H 0.094 0.906 9 C 0.318 3.682 10 C -0.396 4.396 11 C 0.272 3.728 12 N -0.654 5.654 13 C 0.290 3.710 14 C -0.107 4.107 15 C 0.064 3.936 16 N -0.635 5.635 17 C 0.061 3.939 18 H 0.073 0.927 19 C -0.108 4.108 20 C 0.527 3.473 21 O -0.579 6.579 22 N -0.713 5.713 23 C -0.304 4.304 24 C 0.125 3.875 25 N -0.602 5.602 26 H 0.415 0.585 27 H 0.304 0.696 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.341 0.659 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.402 0.598 37 H 0.129 0.871 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 -7.476 7.343 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.168 4.168 3 Si 0.813 3.187 4 H -0.192 1.192 5 H -0.182 1.182 6 H -0.181 1.181 7 C -0.530 4.530 8 H 0.112 0.888 9 C 0.208 3.792 10 C -0.425 4.425 11 C 0.108 3.892 12 N -0.382 5.382 13 C 0.112 3.888 14 C -0.147 4.147 15 C -0.065 4.065 16 N -0.265 5.265 17 C -0.052 4.052 18 H 0.091 0.909 19 C -0.149 4.149 20 C 0.315 3.685 21 O -0.458 6.458 22 N -0.370 5.370 23 C -0.334 4.334 24 C -0.004 4.004 25 N -0.213 5.213 26 H 0.256 0.744 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.242 0.758 37 H 0.146 0.854 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.606 -7.135 6.248 9.504 hybrid contribution -1.272 0.436 0.732 1.531 sum -0.667 -6.699 6.980 9.698 Atomic orbital electron populations 1.69352 1.08773 1.32469 1.34910 1.26904 0.95633 1.04790 0.89500 0.85008 0.79194 0.74945 0.79570 1.19203 1.18163 1.18111 1.19693 0.99153 0.90783 1.43337 0.88832 1.17748 0.82490 0.94334 0.84581 1.20143 1.10609 0.89978 1.21743 1.20246 0.88733 0.92829 0.87399 1.73887 1.33066 0.95807 1.35438 1.20866 0.78203 0.95049 0.94728 1.21662 0.97531 1.01074 0.94445 1.22922 0.95715 0.99783 0.88065 1.62771 1.10649 1.45496 1.07578 1.22763 0.91560 0.95909 0.94937 0.90939 1.22043 0.91664 1.02529 0.98633 1.22757 0.90145 0.73809 0.81743 1.90628 1.46303 1.55330 1.53570 1.46151 1.10198 1.71974 1.08691 1.22472 1.03419 0.96548 1.10943 1.21931 0.95796 0.86557 0.96077 1.42017 1.25128 1.09379 1.44761 0.74429 0.88440 0.89845 0.92046 0.89499 0.90839 0.91254 0.84296 0.87936 0.88358 0.75845 0.85358 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -35.74 11.15 21.89 0.24 -35.50 16 2 C 0.05 2.11 5.18 85.39 0.44 2.55 16 3 Si 0.99 32.91 29.59 68.60 2.03 34.94 16 4 H -0.27 -8.96 7.11 99.48 0.71 -8.26 16 5 H -0.26 -7.84 7.11 99.48 0.71 -7.13 16 6 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 7 C -0.50 -24.15 9.03 23.25 0.21 -23.94 16 8 H 0.09 4.54 7.90 -2.91 -0.02 4.52 16 9 C 0.32 15.79 6.35 38.88 0.25 16.03 16 10 C -0.40 -20.70 9.83 23.41 0.23 -20.47 16 11 C 0.27 12.82 6.33 42.30 0.27 13.09 16 12 N -0.65 -28.55 7.53 -307.06 -2.31 -30.87 16 13 C 0.29 9.90 1.11 90.48 0.10 10.00 16 14 C -0.11 -3.03 5.94 29.96 0.18 -2.85 16 15 C 0.06 1.61 7.42 86.13 0.64 2.25 16 16 N -0.64 -18.11 6.96 -477.06 -3.32 -21.43 16 17 C 0.06 1.82 3.78 46.70 0.18 2.00 16 18 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 19 C -0.11 -3.74 6.40 30.61 0.20 -3.54 16 20 C 0.53 21.03 8.29 88.22 0.73 21.77 16 21 O -0.58 -27.06 18.03 -3.05 -0.05 -27.12 16 22 N -0.71 -25.08 4.80 -430.33 -2.07 -27.14 16 23 C -0.30 -12.02 8.33 23.66 0.20 -11.83 16 24 C 0.13 4.63 11.15 83.10 0.93 5.56 16 25 N -0.60 -25.73 4.88 -188.19 -0.92 -26.64 16 26 H 0.42 16.91 6.40 -92.71 -0.59 16.31 16 27 H 0.30 11.62 8.29 -92.71 -0.77 10.85 16 28 H 0.08 4.68 8.06 -2.91 -0.02 4.65 16 29 H 0.06 1.97 7.37 -2.38 -0.02 1.95 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.34 7.56 8.91 -89.70 -0.80 6.76 16 34 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.10 4.04 7.41 -2.38 -0.02 4.02 16 36 H 0.40 12.88 7.69 -92.71 -0.71 12.16 16 37 H 0.13 4.39 5.48 -2.91 -0.02 4.37 16 38 H 0.18 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -63.41 309.70 -2.83 -66.24 By element: Atomic # 1 Polarization: 57.88 SS G_CDS: -0.97 Total: 56.91 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 4.54 Total: 10.61 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -8.37 Total: -141.58 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 32.91 SS G_CDS: 2.03 Total: 34.94 kcal Total: -63.41 -2.83 -66.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.806 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds