Wall clock time and date at job start Tue Mar 31 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 119.99781 * 2 1 4 4 H 1.48498 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47137 * 300.00095 * 3 2 1 6 6 H 1.48503 * 109.47059 * 59.99870 * 3 2 1 7 7 C 1.40018 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00071 * 192.19313 * 7 2 1 9 9 C 1.41556 * 120.00193 * 12.19027 * 7 2 1 10 10 C 1.41184 * 120.99296 * 205.80256 * 9 7 2 11 11 C 1.36552 * 119.14692 * 179.97438 * 10 9 7 12 12 N 1.32099 * 121.26852 * 0.02562 * 11 10 9 13 13 C 1.32532 * 122.21620 * 359.97438 * 12 11 10 14 14 N 1.39075 * 119.65834 * 179.97438 * 13 12 11 15 15 C 1.47315 * 110.99844 * 33.90298 * 14 13 12 16 16 C 1.52856 * 109.05531 * 170.66201 * 15 14 13 17 17 N 1.45940 * 110.67930 * 52.04533 * 16 15 14 18 18 C 1.34116 * 122.59660 * 339.40154 * 17 16 15 19 19 O 1.21283 * 119.26826 * 181.81527 * 18 17 16 20 20 C 1.46643 * 111.00396 * 271.52014 * 14 13 12 21 21 C 1.53506 * 113.53227 * 38.16106 * 20 14 13 22 22 N 1.48038 * 86.05053 * 222.13954 * 21 20 14 23 23 C 1.48040 * 90.82828 * 24.38171 * 22 21 20 24 24 C 1.38742 * 120.68453 * 0.02562 * 13 12 11 25 25 H 0.97003 * 120.00013 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.42952 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.36689 * 179.72372 * 11 10 9 28 28 H 1.09003 * 109.54224 * 290.52897 * 15 14 13 29 29 H 1.09004 * 109.54257 * 50.78853 * 15 14 13 30 30 H 1.09002 * 109.22870 * 291.74236 * 16 15 14 31 31 H 1.08993 * 109.20273 * 172.33926 * 16 15 14 32 32 H 0.96996 * 118.70226 * 159.37105 * 17 16 15 33 33 H 1.08998 * 113.78120 * 336.42406 * 21 20 14 34 34 H 1.09006 * 113.77741 * 107.85729 * 21 20 14 35 35 H 1.00907 * 111.00236 * 271.45809 * 22 21 20 36 36 H 1.08997 * 113.77697 * 221.32866 * 23 22 21 37 37 H 1.09000 * 113.77758 * 89.90547 * 23 22 21 38 38 H 1.08003 * 120.67176 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0694 -1.2232 0.1970 9 6 1.3238 -2.4246 -0.2599 10 6 1.8093 -3.6539 0.2365 11 6 1.1194 -4.8003 -0.0360 12 7 0.0105 -4.7790 -0.7536 13 6 -0.4917 -3.6553 -1.2450 14 7 -1.6627 -3.6945 -1.9942 15 6 -2.5693 -4.7462 -1.5019 16 6 -3.9244 -4.6010 -2.1941 17 7 -3.7597 -4.5451 -3.6431 18 6 -2.5981 -4.2138 -4.2259 19 8 -2.5376 -4.1540 -5.4358 20 6 -1.3710 -3.9157 -3.4142 21 6 -0.2167 -4.8980 -3.6571 22 7 0.2295 -3.9547 -4.7071 23 6 -0.4686 -2.8380 -4.0308 24 6 0.1394 -2.4402 -1.0207 25 1 -0.4850 0.8401 -0.0004 26 1 2.7143 -3.6870 0.8250 27 1 1.4900 -5.7431 0.3382 28 1 -2.1479 -5.7258 -1.7275 29 1 -2.6973 -4.6422 -0.4244 30 1 -4.4060 -3.6850 -1.8518 31 1 -4.5517 -5.4543 -1.9366 32 1 -4.5202 -4.7563 -4.2069 33 1 0.4741 -4.9805 -2.8180 34 1 -0.5371 -5.8658 -4.0430 35 1 -0.2037 -4.1684 -5.5931 36 1 -0.9891 -2.1670 -4.7141 37 1 0.1478 -2.3113 -3.3023 38 1 -0.2702 -1.5245 -1.4209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165302647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:41 Heat of formation + Delta-G solvation = 59.177566 kcal Electronic energy + Delta-G solvation = -23837.550186 eV Core-core repulsion = 20488.450154 eV Total energy + Delta-G solvation = -3349.100032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47472 -38.79373 -37.48848 -36.59904 -34.32179 -33.47784 -30.64209 -29.61803 -28.55246 -26.30222 -25.68731 -25.35083 -23.67495 -21.83152 -21.33933 -20.66380 -18.23770 -17.76404 -16.98372 -16.84552 -15.86913 -15.77430 -15.30843 -15.08986 -14.64301 -14.53108 -14.26386 -13.44874 -13.29639 -13.06688 -12.93682 -12.69244 -12.49411 -12.03321 -11.72788 -11.56877 -11.42989 -11.25580 -11.19945 -10.93283 -10.68805 -10.30654 -10.25956 -9.88597 -9.51739 -9.12825 -8.76940 -8.26584 -8.08096 -8.03627 -7.32723 -6.88435 -4.68205 2.48351 2.54874 2.73366 3.01173 3.05938 3.13077 3.21157 3.81904 4.02943 4.33585 4.44843 4.56218 4.80782 4.95428 5.29871 5.37623 5.52481 5.54868 5.64296 5.74447 5.89394 5.94920 6.13705 6.26944 6.32938 6.40719 6.50801 6.65132 6.71064 6.83386 7.00757 7.08116 7.16111 7.25146 7.39922 7.46527 7.66745 7.83352 8.12281 8.17918 8.46421 8.64765 8.66998 9.38745 10.01340 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.005871 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.729615 B = 4768.081375 C = 5086.868982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.130 3.870 10 C -0.270 4.270 11 C 0.112 3.888 12 N -0.601 5.601 13 C 0.267 3.733 14 N -0.454 5.454 15 C 0.048 3.952 16 C 0.111 3.889 17 N -0.716 5.716 18 C 0.551 3.449 19 O -0.549 6.549 20 C 0.020 3.980 21 C 0.016 3.984 22 N -0.651 5.651 23 C 0.049 3.951 24 C -0.176 4.176 25 H 0.284 0.716 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.399 0.601 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.340 0.660 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 -4.737 -2.313 7.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.479 4.479 8 H 0.101 0.899 9 C 0.121 3.879 10 C -0.294 4.294 11 C -0.042 4.042 12 N -0.320 5.320 13 C 0.045 3.955 14 N -0.176 5.176 15 C -0.080 4.080 16 C -0.013 4.013 17 N -0.367 5.367 18 C 0.337 3.663 19 O -0.427 6.427 20 C -0.074 4.074 21 C -0.116 4.116 22 N -0.280 5.280 23 C -0.082 4.082 24 C -0.200 4.200 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.137 0.863 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.155 0.845 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.807 -4.700 -2.827 7.988 hybrid contribution -0.436 0.549 0.115 0.711 sum -6.244 -4.151 -2.713 7.973 Atomic orbital electron populations 1.69754 1.07538 1.29582 1.33763 1.25984 0.94875 1.01591 0.92032 0.86178 0.80913 0.80510 0.78746 1.18259 1.19479 1.19834 1.19664 0.96509 0.90188 1.41585 0.89883 1.17789 0.90698 0.92393 0.86988 1.21640 1.04301 0.94336 1.09101 1.21325 0.91076 0.96643 0.95197 1.67246 1.15992 1.29864 1.18920 1.19113 0.90078 0.90250 0.96009 1.60536 1.12564 1.44529 0.99949 1.22213 0.90666 0.94601 1.00510 1.21598 0.98395 1.02408 0.78925 1.45551 1.12745 1.69898 1.08554 1.19524 0.84100 0.75179 0.87539 1.90701 1.84652 1.53275 1.14029 1.24275 0.93426 1.00067 0.89598 1.24373 0.94782 0.94767 0.97710 1.65171 1.54721 1.03792 1.04267 1.23866 0.93103 0.93740 0.97457 1.21851 0.98888 0.96304 1.02933 0.90503 0.88037 0.86292 0.92564 0.88687 0.90779 0.90161 0.76591 0.85270 0.91954 0.84479 0.90665 0.85839 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.86 10.79 55.55 0.60 -18.26 16 2 C 0.08 1.76 5.28 -17.34 -0.09 1.67 16 3 Si 0.91 17.65 29.58 -169.99 -5.03 12.62 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.07 9.13 -37.65 -0.34 -11.42 16 8 H 0.08 1.98 7.88 -52.48 -0.41 1.56 16 9 C 0.13 3.22 5.60 -106.55 -0.60 2.63 16 10 C -0.27 -6.14 9.85 -39.07 -0.38 -6.53 16 11 C 0.11 2.36 11.10 -18.05 -0.20 2.16 16 12 N -0.60 -12.82 7.54 -12.82 -0.10 -12.92 16 13 C 0.27 5.82 4.07 -154.98 -0.63 5.19 16 14 N -0.45 -8.61 4.67 -162.38 -0.76 -9.37 16 15 C 0.05 0.76 4.88 -3.67 -0.02 0.74 16 16 C 0.11 1.33 7.33 -4.42 -0.03 1.30 16 17 N -0.72 -9.52 5.54 -61.13 -0.34 -9.86 16 18 C 0.55 9.31 7.09 -11.56 -0.08 9.23 16 19 O -0.55 -10.27 16.02 5.55 0.09 -10.18 16 20 C 0.02 0.37 1.11 -136.05 -0.15 0.22 16 21 C 0.02 0.29 7.55 -2.94 -0.02 0.27 16 22 N -0.65 -12.11 8.55 -118.87 -1.02 -13.13 16 23 C 0.05 0.94 7.70 -2.95 -0.02 0.91 16 24 C -0.18 -4.23 6.72 -38.44 -0.26 -4.49 16 25 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 26 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.06 0.92 7.79 -51.93 -0.40 0.51 16 29 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.40 4.36 8.87 -40.82 -0.36 4.00 16 33 H 0.13 2.71 5.34 -51.93 -0.28 2.44 16 34 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.34 6.03 7.52 -39.29 -0.30 5.74 16 36 H 0.07 1.37 7.99 -51.93 -0.41 0.96 16 37 H 0.12 2.64 5.35 -51.93 -0.28 2.37 16 38 H 0.14 3.45 5.82 -52.48 -0.31 3.15 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -27.04 304.82 -9.21 -36.24 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -4.41 Total: 18.39 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.83 Total: 1.88 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -1.61 Total: -63.54 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.04 -9.21 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165302647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.419 kcal (2) G-P(sol) polarization free energy of solvation -27.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds