Wall clock time and date at job start Tue Mar 31 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35588 * 117.00008 * 2 1 4 4 C 1.39093 * 120.51812 * 0.02562 * 3 2 1 5 5 C 1.38395 * 118.60384 * 179.69771 * 4 3 2 6 6 C 1.39717 * 119.60236 * 0.27269 * 5 4 3 7 7 N 1.39737 * 119.47230 * 179.97438 * 6 5 4 8 8 C 1.35868 * 126.10285 * 179.71421 * 7 6 5 9 9 C 1.35273 * 107.61451 * 179.90116 * 8 7 6 10 10 C 1.50704 * 126.01522 * 180.13816 * 9 8 7 11 11 C 1.53000 * 109.47174 * 270.24566 * 10 9 8 12 12 N 1.46897 * 109.46667 * 179.97438 * 11 10 9 13 13 C 1.39960 * 107.97243 * 0.37332 * 9 8 7 14 14 N 1.30827 * 108.36676 * 359.76515 * 13 9 8 15 15 N 1.31786 * 121.04725 * 359.97438 * 6 5 4 16 16 C 1.33731 * 121.49895 * 0.02562 * 15 6 5 17 17 C 1.40964 * 119.85356 * 180.02562 * 16 15 6 18 18 H 1.08000 * 119.99785 * 180.02562 * 17 16 15 19 19 C 1.40036 * 120.00356 * 359.97438 * 17 16 15 20 20 N 1.30770 * 119.99753 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99865 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47244 * 90.00484 * 21 19 17 23 23 H 1.48503 * 109.46723 * 210.00241 * 21 19 17 24 24 H 1.48505 * 109.47234 * 329.99852 * 21 19 17 25 25 H 1.08999 * 109.47172 * 59.99673 * 1 2 3 26 26 H 1.08997 * 109.46790 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47026 * 299.99385 * 1 2 3 28 28 H 1.08002 * 120.70275 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.19980 * 180.30275 * 5 4 3 30 30 H 1.08000 * 126.19015 * 0.04805 * 8 7 6 31 31 H 1.09000 * 109.46637 * 30.25049 * 10 9 8 32 32 H 1.08996 * 109.47046 * 150.24292 * 10 9 8 33 33 H 1.08996 * 109.47297 * 299.99654 * 11 10 9 34 34 H 1.09000 * 109.46685 * 60.00157 * 11 10 9 35 35 H 1.00899 * 110.99943 * 179.97438 * 12 11 10 36 36 H 1.00899 * 111.00310 * 303.95142 * 12 11 10 37 37 H 1.07994 * 125.81870 * 179.80892 * 13 9 8 38 38 H 0.97001 * 119.99435 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2976 2.3814 0.0005 5 6 1.9668 3.5929 0.0069 6 6 3.3638 3.6096 0.0069 7 7 4.0367 4.8343 0.0128 8 6 5.3843 5.0074 0.0189 9 6 5.6261 6.3384 0.0211 10 6 6.9838 6.9924 0.0247 11 6 7.4429 7.2064 1.4684 12 7 8.7666 7.8433 1.4719 13 6 4.3934 7.0012 0.0247 14 7 3.4423 6.1029 0.0197 15 7 4.0570 2.4888 0.0013 16 6 3.4548 1.2948 -0.0050 17 6 4.2304 0.1177 -0.0103 18 1 3.7465 -0.8478 -0.0158 19 6 5.6283 0.2002 -0.0095 20 7 6.2143 1.3693 -0.0033 21 14 6.6560 -1.3597 -0.0172 22 1 6.9288 -1.7658 -1.4193 23 1 7.9406 -1.1095 0.6846 24 1 5.9156 -2.4437 0.6772 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2181 2.3479 0.0005 29 1 1.4124 4.5197 0.0124 30 1 6.1278 4.2241 0.0194 31 1 7.6974 6.3508 -0.4923 32 1 6.9250 7.9544 -0.4843 33 1 6.7293 7.8479 1.9853 34 1 7.5017 6.2442 1.9773 35 1 9.0920 7.9958 2.4147 36 1 9.4314 7.2986 0.9433 37 1 4.2515 8.0718 0.0300 38 1 7.1826 1.4264 -0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168946015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:54 Heat of formation + Delta-G solvation = 76.421559 kcal Electronic energy + Delta-G solvation = -22231.790545 eV Core-core repulsion = 18883.438269 eV Total energy + Delta-G solvation = -3348.352276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76010 -39.00877 -36.90391 -35.44256 -33.96043 -32.14046 -30.94763 -30.53636 -28.89436 -27.19049 -26.61000 -25.26059 -22.62000 -22.19652 -21.57042 -20.00390 -19.41597 -17.68542 -16.96461 -16.78286 -15.83154 -15.37286 -14.94794 -14.92673 -14.69846 -14.43517 -14.13380 -13.75484 -13.24556 -13.14552 -12.68647 -12.41983 -12.33207 -12.19163 -11.81442 -11.59875 -11.41155 -11.31865 -10.94521 -10.83973 -10.65199 -10.62442 -10.16007 -9.97902 -9.68959 -9.04287 -8.69971 -8.37727 -8.12948 -8.10408 -6.97038 -6.66064 -4.61032 1.91728 2.61319 2.98263 3.01422 3.05364 3.09463 3.21221 3.25903 3.83252 4.29955 4.57321 4.64155 5.09087 5.35643 5.45799 5.54952 5.60537 5.62891 5.69575 5.71444 5.80032 5.89850 5.96081 5.99264 6.14254 6.27323 6.31759 6.45250 6.60044 6.68774 6.97157 7.04590 7.10405 7.14329 7.31398 7.40248 7.44329 7.94618 7.98752 8.14446 8.31831 8.51960 8.78905 9.69531 10.09328 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.005491 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.398201 B = 5098.394661 C = 7049.962604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.307 6.307 3 C -0.030 4.030 4 C -0.134 4.134 5 C -0.270 4.270 6 C 0.348 3.652 7 N -0.296 5.296 8 C 0.104 3.896 9 C -0.266 4.266 10 C -0.028 4.028 11 C 0.064 3.936 12 N -0.855 5.855 13 C 0.047 3.953 14 N -0.294 5.294 15 N -0.483 5.483 16 C 0.274 3.726 17 C -0.403 4.403 18 H 0.097 0.903 19 C 0.067 3.933 20 N -0.717 5.717 21 Si 0.914 3.086 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.259 1.259 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.184 0.816 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.338 0.662 36 H 0.339 0.661 37 H 0.179 0.821 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 4.290 1.222 4.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.079 4.079 4 C -0.158 4.158 5 C -0.295 4.295 6 C 0.118 3.882 7 N -0.071 5.071 8 C -0.042 4.042 9 C -0.277 4.277 10 C -0.067 4.067 11 C -0.067 4.067 12 N -0.384 5.384 13 C -0.140 4.140 14 N -0.114 5.114 15 N -0.202 5.202 16 C 0.146 3.854 17 C -0.435 4.435 18 H 0.115 0.885 19 C -0.159 4.159 20 N -0.338 5.338 21 Si 0.738 3.262 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.183 1.183 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.201 0.799 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.196 0.804 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.795 4.516 0.853 4.664 hybrid contribution 0.407 -1.118 0.508 1.293 sum 1.202 3.398 1.362 3.853 Atomic orbital electron populations 1.22794 0.81350 1.02117 1.00121 1.85944 1.18577 1.27384 1.90044 1.20204 0.93482 0.83476 1.10750 1.20820 0.98156 0.91829 1.04999 1.20497 0.92085 0.97484 1.19479 1.17958 0.87594 0.83412 0.99239 1.45712 1.04154 1.03799 1.53448 1.22865 0.86642 0.97421 0.97262 1.19916 0.95665 0.92436 1.19719 1.19678 0.91720 0.99794 0.95502 1.21859 0.90367 0.96921 0.97555 1.58778 1.05044 1.55113 1.19446 1.23756 0.90456 0.99171 1.00596 1.77309 1.22259 0.87091 1.24776 1.68066 1.35239 0.94806 1.22074 1.17708 0.85156 0.90359 0.92167 1.19592 0.90620 0.92950 1.40357 0.88493 1.26096 0.98736 0.97588 0.93449 1.70077 1.10689 1.24871 1.28207 0.86205 0.78947 0.81670 0.79397 1.19245 1.20065 1.18295 0.94004 0.89658 0.94007 0.86970 0.86976 0.79886 0.91923 0.90949 0.91178 0.95415 0.85069 0.84960 0.80426 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.83 101.05 0.99 1.51 16 2 O -0.31 -6.67 9.61 -18.46 -0.18 -6.84 16 3 C -0.03 -0.73 6.74 -38.11 -0.26 -0.99 16 4 C -0.13 -2.98 9.12 -39.21 -0.36 -3.34 16 5 C -0.27 -6.38 9.70 -38.97 -0.38 -6.75 16 6 C 0.35 8.75 7.56 -154.60 -1.17 7.58 16 7 N -0.30 -6.79 3.80 -12.04 -0.05 -6.84 16 8 C 0.10 2.14 11.00 -16.82 -0.18 1.96 16 9 C -0.27 -4.55 5.35 -105.03 -0.56 -5.11 16 10 C -0.03 -0.38 5.96 -27.88 -0.17 -0.54 16 11 C 0.06 0.80 6.77 -3.83 -0.03 0.77 16 12 N -0.85 -9.06 9.62 -10.37 -0.10 -9.16 16 13 C 0.05 0.81 11.95 -17.33 -0.21 0.61 16 14 N -0.29 -6.16 11.82 30.64 0.36 -5.80 16 15 N -0.48 -12.83 7.33 -10.06 -0.07 -12.91 16 16 C 0.27 7.28 6.56 -84.85 -0.56 6.72 16 17 C -0.40 -10.37 8.94 -37.88 -0.34 -10.71 16 18 H 0.10 2.40 7.31 -52.49 -0.38 2.02 16 19 C 0.07 1.60 5.50 -17.33 -0.10 1.50 16 20 N -0.72 -17.57 11.46 55.55 0.64 -16.93 16 21 Si 0.91 17.75 29.56 -169.99 -5.02 12.72 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 25 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 28 H 0.11 2.12 6.44 -52.49 -0.34 1.78 16 29 H 0.11 2.53 7.67 -52.49 -0.40 2.12 16 30 H 0.18 3.90 8.05 -52.49 -0.42 3.48 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 3.02 9.08 -39.29 -0.36 2.66 16 36 H 0.34 3.22 8.99 -39.29 -0.35 2.87 16 37 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.27 6.05 8.29 -40.82 -0.34 5.71 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -29.27 329.47 -7.49 -36.76 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.73 Total: 10.83 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.30 Total: -6.80 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.78 Total: -51.63 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.18 Total: -6.84 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.27 -7.49 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168946015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.181 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds