Wall clock time and date at job start Tue Mar 31 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35239 * 126.14970 * 2 1 4 4 C 1.50694 * 126.03652 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47245 * 270.32586 * 4 3 2 6 6 N 1.46897 * 109.47317 * 180.02562 * 5 4 3 7 7 C 1.40392 * 107.91901 * 180.29654 * 3 2 1 8 8 O 1.35962 * 125.87241 * 179.75729 * 7 3 2 9 9 N 1.31110 * 108.24781 * 359.73899 * 7 3 2 10 10 N 1.35845 * 126.14876 * 179.85014 * 2 1 3 11 11 C 1.39889 * 126.04743 * 359.96590 * 10 2 1 12 12 C 1.39612 * 120.77426 * 324.71230 * 11 10 2 13 13 C 1.38537 * 119.48023 * 179.72737 * 12 11 10 14 14 N 1.31502 * 121.09195 * 0.27543 * 13 12 11 15 15 C 1.33660 * 121.67967 * 359.97438 * 14 13 12 16 16 C 1.41433 * 119.79944 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00176 * 179.97438 * 16 15 14 18 18 C 1.40019 * 120.00171 * 359.97438 * 16 15 14 19 19 N 1.30747 * 119.99676 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00377 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46994 * 89.99691 * 20 18 16 22 22 H 1.48492 * 109.47270 * 210.00079 * 20 18 16 23 23 H 1.48502 * 109.47017 * 330.00456 * 20 18 16 24 24 C 1.38888 * 120.77197 * 144.96585 * 11 10 2 25 25 H 1.08995 * 109.46770 * 270.17516 * 1 2 3 26 26 H 1.08999 * 109.47125 * 30.17617 * 1 2 3 27 27 H 1.09001 * 109.47094 * 150.17531 * 1 2 3 28 28 H 1.08997 * 109.47459 * 30.33283 * 4 3 2 29 29 H 1.09002 * 109.46865 * 150.32919 * 4 3 2 30 30 H 1.08998 * 109.46948 * 300.00586 * 5 4 3 31 31 H 1.09002 * 109.46917 * 60.00365 * 5 4 3 32 32 H 1.00900 * 111.00127 * 180.02562 * 6 5 4 33 33 H 1.00905 * 110.99602 * 303.95698 * 6 5 4 34 34 H 0.96696 * 113.99954 * 270.00073 * 8 7 3 35 35 H 1.08002 * 120.26381 * 0.02562 * 12 11 10 36 36 H 1.07994 * 119.45463 * 180.25774 * 13 12 11 37 37 H 0.97000 * 119.99612 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.55432 * 0.03988 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0920 0.0000 4 6 1.8438 2.5267 -0.0005 5 6 1.6805 3.0094 -1.4432 6 7 1.2317 4.4081 -1.4438 7 6 3.6382 0.6528 -0.0069 8 8 4.7396 1.4500 -0.0137 9 7 3.6386 -0.6583 -0.0052 10 7 2.3084 -1.0969 0.0029 11 6 1.8806 -2.4288 0.0070 12 6 0.7303 -2.8075 0.7017 13 6 0.3280 -4.1330 0.6830 14 7 1.0147 -5.0420 0.0261 15 6 2.1249 -4.7303 -0.6497 16 6 2.8331 -5.7400 -1.3421 17 1 3.7303 -5.4917 -1.8896 18 6 2.3709 -7.0615 -1.3178 19 7 1.2850 -7.3621 -0.6546 20 14 3.3065 -8.3952 -2.2317 21 1 4.3210 -8.9956 -1.3286 22 1 2.3585 -9.4466 -2.6797 23 1 3.9841 -7.8035 -3.4133 24 6 2.5934 -3.4062 -0.6755 25 1 -0.3633 0.0031 1.0276 26 1 -0.3633 0.8884 -0.5166 27 1 -0.3633 -0.8916 -0.5111 28 1 0.8880 2.6015 0.5181 29 1 2.5826 3.1459 0.5083 30 1 2.6363 2.9346 -1.9617 31 1 0.9417 2.3902 -1.9520 32 1 1.1159 4.7504 -2.3858 33 1 0.3799 4.5148 -0.9133 34 1 5.0533 1.6798 -0.8991 35 1 0.1559 -2.0720 1.2453 36 1 -0.5642 -4.4248 1.2170 37 1 0.9650 -8.2777 -0.6375 38 1 3.4906 -3.1517 -1.2201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170343702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:50 Heat of formation + Delta-G solvation = 65.978911 kcal Electronic energy + Delta-G solvation = -22143.957020 eV Core-core repulsion = 18795.151916 eV Total energy + Delta-G solvation = -3348.805103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34640 -38.39986 -37.03711 -35.74166 -33.95671 -32.59041 -32.37083 -30.28405 -29.60294 -27.80104 -26.07239 -25.86021 -22.78253 -22.36505 -21.51293 -20.42925 -19.36394 -17.86256 -17.52631 -16.25941 -16.05256 -15.45348 -15.26881 -14.87031 -14.60701 -14.39665 -14.24442 -13.87441 -13.35121 -13.31578 -12.84750 -12.62644 -12.55615 -12.23003 -11.99876 -11.92831 -11.64578 -11.38615 -11.29664 -11.18877 -10.95377 -10.64158 -10.14099 -9.89548 -9.66403 -9.26112 -8.90126 -8.50444 -7.90683 -7.83573 -7.64861 -6.60573 -4.73814 1.67923 2.53098 2.56561 2.77749 2.94414 3.00721 3.04202 3.08431 3.82603 4.18858 4.43451 4.55201 4.82280 5.03149 5.19524 5.23510 5.38563 5.49304 5.59580 5.63317 5.71905 5.86118 5.90025 6.05861 6.09852 6.18948 6.32007 6.40867 6.44817 6.61217 6.85744 6.91812 6.93852 7.17567 7.21438 7.29209 7.36561 7.71274 7.91055 8.01384 8.05220 8.42830 8.68838 9.87796 10.11819 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.003698 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.754200 B = 7568.915081 C = 8075.825230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.105 3.895 3 C -0.260 4.260 4 C -0.029 4.029 5 C 0.066 3.934 6 N -0.853 5.853 7 C 0.251 3.749 8 O -0.459 6.459 9 N -0.292 5.292 10 N -0.285 5.285 11 C 0.194 3.806 12 C -0.330 4.330 13 C 0.146 3.854 14 N -0.483 5.483 15 C 0.262 3.738 16 C -0.417 4.417 17 H 0.087 0.913 18 C 0.067 3.933 19 N -0.707 5.707 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.260 1.260 24 C -0.252 4.252 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.339 0.661 33 H 0.339 0.661 34 H 0.393 0.607 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.276 0.724 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 13.365 -2.100 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.021 4.021 3 C -0.273 4.273 4 C -0.068 4.068 5 C -0.065 4.065 6 N -0.382 5.382 7 C 0.045 3.955 8 O -0.262 6.262 9 N -0.122 5.122 10 N -0.064 5.064 11 C 0.099 3.901 12 C -0.356 4.356 13 C -0.021 4.021 14 N -0.196 5.196 15 C 0.138 3.862 16 C -0.448 4.448 17 H 0.106 0.894 18 C -0.160 4.160 19 N -0.328 5.328 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.184 1.184 24 C -0.277 4.277 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.248 0.752 35 H 0.123 0.877 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.093 11.352 -1.099 11.596 hybrid contribution -0.385 0.722 -1.282 1.521 sum -2.478 12.074 -2.381 12.554 Atomic orbital electron populations 1.20580 0.87218 1.03886 1.03366 1.20999 0.94809 0.85917 1.00348 1.19751 0.91767 0.95534 1.20249 1.19687 1.01241 0.90089 0.95760 1.21800 0.99887 0.87491 0.97300 1.58739 1.39219 1.20688 1.19545 1.19742 0.86406 0.87838 1.01560 1.84861 1.42939 1.65229 1.33153 1.77525 0.97632 1.11452 1.25601 1.45593 1.02215 1.04498 1.54062 1.17480 0.95698 0.78337 0.98584 1.21178 1.02445 0.98663 1.13267 1.22442 0.97319 0.87937 0.94445 1.68752 1.07373 1.33141 1.10351 1.18483 0.88907 0.89163 0.89674 1.19707 1.08366 0.91451 1.25238 0.89443 1.26110 0.94882 1.00035 0.94960 1.70119 1.16145 1.19851 1.26660 0.86245 0.79980 0.79832 0.80408 1.19177 1.19911 1.18378 1.21672 1.03696 0.93816 1.08500 0.90043 0.90449 0.89721 0.91785 0.90318 0.91336 0.95572 0.84858 0.84934 0.75242 0.87659 0.85292 0.91244 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 8.24 36.01 0.30 -0.91 16 2 C 0.11 1.78 6.79 -81.88 -0.56 1.23 16 3 C -0.26 -4.07 5.37 -104.88 -0.56 -4.63 16 4 C -0.03 -0.34 5.56 -27.89 -0.16 -0.50 16 5 C 0.07 0.68 6.77 -3.83 -0.03 0.66 16 6 N -0.85 -7.32 9.62 -10.37 -0.10 -7.42 16 7 C 0.25 4.44 8.41 -17.05 -0.14 4.29 16 8 O -0.46 -6.78 13.65 -19.62 -0.27 -7.05 16 9 N -0.29 -6.16 12.37 30.58 0.38 -5.78 16 10 N -0.28 -5.92 3.76 -6.74 -0.03 -5.94 16 11 C 0.19 4.43 6.30 -83.43 -0.53 3.91 16 12 C -0.33 -6.99 8.40 -38.96 -0.33 -7.32 16 13 C 0.15 3.30 11.17 -17.58 -0.20 3.10 16 14 N -0.48 -12.70 7.86 -11.19 -0.09 -12.79 16 15 C 0.26 6.97 6.55 -85.01 -0.56 6.42 16 16 C -0.42 -10.84 9.14 -37.70 -0.34 -11.19 16 17 H 0.09 2.14 7.85 -52.48 -0.41 1.73 16 18 C 0.07 1.63 5.50 -17.35 -0.10 1.54 16 19 N -0.71 -18.00 11.46 55.55 0.64 -17.36 16 20 Si 0.91 17.92 29.56 -169.99 -5.02 12.90 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 C -0.25 -6.29 9.60 -38.50 -0.37 -6.65 16 25 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 26 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 27 H 0.08 1.20 6.93 -51.93 -0.36 0.84 16 28 H 0.06 0.68 7.79 -51.93 -0.40 0.28 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.34 2.36 9.08 -39.29 -0.36 2.00 16 33 H 0.34 2.44 8.99 -39.29 -0.35 2.09 16 34 H 0.39 3.76 9.06 45.56 0.41 4.17 16 35 H 0.11 1.93 6.25 -52.49 -0.33 1.60 16 36 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 37 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 38 H 0.11 2.74 8.06 -52.49 -0.42 2.31 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -31.12 327.76 -6.97 -38.09 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -3.86 Total: 10.48 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.56 Total: -10.07 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.80 Total: -49.29 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.27 Total: -7.05 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.02 Total: 12.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.12 -6.97 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170343702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.068 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds