Wall clock time and date at job start Tue Mar 31 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35239 * 126.14970 * 2 1 4 4 C 1.50694 * 126.03652 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47245 * 270.32586 * 4 3 2 6 6 N 1.46897 * 109.47317 * 180.02562 * 5 4 3 7 7 C 1.40392 * 107.91901 * 180.29654 * 3 2 1 8 8 O 1.35962 * 125.87241 * 179.75729 * 7 3 2 9 9 N 1.31110 * 108.24781 * 359.73899 * 7 3 2 10 10 N 1.35845 * 126.14876 * 179.85014 * 2 1 3 11 11 C 1.39889 * 126.04743 * 359.96590 * 10 2 1 12 12 C 1.39612 * 120.77426 * 324.71230 * 11 10 2 13 13 C 1.38537 * 119.48023 * 179.72737 * 12 11 10 14 14 N 1.31502 * 121.09195 * 0.27543 * 13 12 11 15 15 C 1.33660 * 121.67967 * 359.97438 * 14 13 12 16 16 C 1.41433 * 119.79944 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00176 * 179.97438 * 16 15 14 18 18 C 1.40019 * 120.00171 * 359.97438 * 16 15 14 19 19 N 1.30747 * 119.99676 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00377 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46994 * 89.99691 * 20 18 16 22 22 H 1.48492 * 109.47270 * 210.00079 * 20 18 16 23 23 H 1.48502 * 109.47017 * 330.00456 * 20 18 16 24 24 C 1.38888 * 120.77197 * 144.96585 * 11 10 2 25 25 H 1.08995 * 109.46770 * 270.17516 * 1 2 3 26 26 H 1.08999 * 109.47125 * 30.17617 * 1 2 3 27 27 H 1.09001 * 109.47094 * 150.17531 * 1 2 3 28 28 H 1.08997 * 109.47459 * 30.33283 * 4 3 2 29 29 H 1.09002 * 109.46865 * 150.32919 * 4 3 2 30 30 H 1.08998 * 109.46948 * 300.00586 * 5 4 3 31 31 H 1.09002 * 109.46917 * 60.00365 * 5 4 3 32 32 H 1.00900 * 111.00127 * 180.02562 * 6 5 4 33 33 H 1.00905 * 110.99602 * 303.95698 * 6 5 4 34 34 H 0.96696 * 113.99954 * 270.00073 * 8 7 3 35 35 H 1.08002 * 120.26381 * 0.02562 * 12 11 10 36 36 H 1.07994 * 119.45463 * 180.25774 * 13 12 11 37 37 H 0.97000 * 119.99612 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.55432 * 0.03988 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0920 0.0000 4 6 1.8438 2.5267 -0.0005 5 6 1.6805 3.0094 -1.4432 6 7 1.2317 4.4081 -1.4438 7 6 3.6382 0.6528 -0.0069 8 8 4.7396 1.4500 -0.0137 9 7 3.6386 -0.6583 -0.0052 10 7 2.3084 -1.0969 0.0029 11 6 1.8806 -2.4288 0.0070 12 6 0.7303 -2.8075 0.7017 13 6 0.3280 -4.1330 0.6830 14 7 1.0147 -5.0420 0.0261 15 6 2.1249 -4.7303 -0.6497 16 6 2.8331 -5.7400 -1.3421 17 1 3.7303 -5.4917 -1.8896 18 6 2.3709 -7.0615 -1.3178 19 7 1.2850 -7.3621 -0.6546 20 14 3.3065 -8.3952 -2.2317 21 1 4.3210 -8.9956 -1.3286 22 1 2.3585 -9.4466 -2.6797 23 1 3.9841 -7.8035 -3.4133 24 6 2.5934 -3.4062 -0.6755 25 1 -0.3633 0.0031 1.0276 26 1 -0.3633 0.8884 -0.5166 27 1 -0.3633 -0.8916 -0.5111 28 1 0.8880 2.6015 0.5181 29 1 2.5826 3.1459 0.5083 30 1 2.6363 2.9346 -1.9617 31 1 0.9417 2.3902 -1.9520 32 1 1.1159 4.7504 -2.3858 33 1 0.3799 4.5148 -0.9133 34 1 5.0533 1.6798 -0.8991 35 1 0.1559 -2.0720 1.2453 36 1 -0.5642 -4.4248 1.2170 37 1 0.9650 -8.2777 -0.6375 38 1 3.4906 -3.1517 -1.2201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170343702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:50 Heat of formation + Delta-G solvation = 40.587345 kcal Electronic energy + Delta-G solvation = -22145.058080 eV Core-core repulsion = 18795.151916 eV Total energy + Delta-G solvation = -3349.906164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.74067 -40.15795 -38.35056 -36.64995 -35.71879 -34.17093 -33.55207 -32.05746 -30.90985 -29.20629 -27.72551 -27.17805 -24.32655 -23.65117 -22.98086 -21.96001 -20.68195 -19.53245 -18.79782 -17.94961 -17.05678 -16.89972 -16.64984 -16.34195 -16.09676 -15.76071 -15.42586 -15.10349 -14.90501 -14.41998 -14.35888 -14.20491 -13.72546 -13.63970 -13.24239 -13.08520 -12.94466 -12.89964 -12.82081 -12.69850 -12.29391 -12.10570 -11.82685 -11.40613 -11.16999 -10.91931 -9.93991 -9.76088 -9.69780 -9.57575 -9.17889 -8.41909 -6.66331 0.15914 0.74485 1.15645 1.27558 1.38937 1.46767 1.51630 1.53363 2.18921 2.73275 2.96449 3.53958 3.71477 3.76407 3.98891 4.06174 4.12073 4.33046 4.41081 4.43804 4.49936 4.60361 4.65912 4.70914 4.80791 4.86845 5.00448 5.04672 5.13291 5.20172 5.26719 5.34410 5.42023 5.57249 5.71015 6.13158 6.25734 6.26340 6.52515 6.57993 6.66151 6.67230 6.80930 8.02683 8.33757 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.003698 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.754200 B = 7568.915081 C = 8075.825230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.100 3.900 3 C -0.251 4.251 4 C -0.022 4.022 5 C 0.073 3.927 6 N -0.855 5.855 7 C 0.257 3.743 8 O -0.462 6.462 9 N -0.349 5.349 10 N -0.310 5.310 11 C 0.202 3.798 12 C -0.312 4.312 13 C 0.136 3.864 14 N -0.515 5.515 15 C 0.240 3.760 16 C -0.458 4.458 17 H 0.085 0.915 18 C 0.026 3.974 19 N -0.743 5.743 20 Si 0.989 3.011 21 H -0.263 1.263 22 H -0.261 1.261 23 H -0.258 1.258 24 C -0.285 4.285 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.350 0.650 33 H 0.349 0.651 34 H 0.416 0.584 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.285 0.715 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 15.209 -1.962 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 C -0.263 4.263 4 C -0.060 4.060 5 C -0.058 4.058 6 N -0.386 5.386 7 C 0.050 3.950 8 O -0.268 6.268 9 N -0.180 5.180 10 N -0.089 5.089 11 C 0.105 3.895 12 C -0.337 4.337 13 C -0.030 4.030 14 N -0.229 5.229 15 C 0.115 3.885 16 C -0.488 4.488 17 H 0.103 0.897 18 C -0.197 4.197 19 N -0.364 5.364 20 Si 0.808 3.192 21 H -0.187 1.187 22 H -0.185 1.185 23 H -0.182 1.182 24 C -0.310 4.310 25 H 0.120 0.880 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.275 0.725 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.096 0.904 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.410 13.259 -0.972 13.725 hybrid contribution 0.013 0.450 -1.254 1.333 sum -3.396 13.709 -2.226 14.298 Atomic orbital electron populations 1.20760 0.84315 1.04928 1.04971 1.21794 0.96602 0.84878 0.99135 1.20140 0.90520 0.97120 1.18505 1.19727 1.01963 0.87300 0.97059 1.21635 0.99740 0.88516 0.95955 1.58678 1.40000 1.19349 1.20599 1.20075 0.87978 0.87327 0.99577 1.84807 1.42323 1.64390 1.35290 1.77445 0.98624 1.13519 1.28370 1.45479 1.02764 1.04343 1.56358 1.17585 0.95470 0.79302 0.97151 1.21487 1.01653 0.98850 1.11713 1.23038 0.97858 0.88269 0.93845 1.68722 1.07855 1.34803 1.11511 1.18784 0.89504 0.89993 0.90192 1.20008 1.09123 0.92912 1.26766 0.89705 1.26968 0.95625 1.01631 0.95455 1.70175 1.17496 1.20886 1.27815 0.85108 0.78586 0.76599 0.78864 1.18731 1.18513 1.18191 1.21573 1.04360 0.94419 1.10640 0.87953 0.87117 0.90975 0.89715 0.90726 0.92100 0.95475 0.83669 0.83806 0.72525 0.84105 0.82055 0.90441 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.09 8.24 71.24 0.59 -1.50 16 2 C 0.10 3.20 6.79 41.25 0.28 3.48 16 3 C -0.25 -7.31 5.37 -20.03 -0.11 -7.42 16 4 C -0.02 -0.45 5.56 29.85 0.17 -0.28 16 5 C 0.07 1.28 6.77 86.30 0.58 1.86 16 6 N -0.86 -11.88 9.62 -186.72 -1.80 -13.68 16 7 C 0.26 8.90 8.41 85.33 0.72 9.62 16 8 O -0.46 -13.12 13.65 -93.12 -1.27 -14.39 16 9 N -0.35 -14.98 12.37 -170.45 -2.11 -17.09 16 10 N -0.31 -12.86 3.76 -175.25 -0.66 -13.52 16 11 C 0.20 9.35 6.30 38.34 0.24 9.59 16 12 C -0.31 -12.92 8.40 22.67 0.19 -12.73 16 13 C 0.14 6.11 11.17 84.81 0.95 7.06 16 14 N -0.52 -27.82 7.86 -189.31 -1.49 -29.31 16 15 C 0.24 13.39 6.55 40.20 0.26 13.65 16 16 C -0.46 -25.07 9.14 23.49 0.21 -24.85 16 17 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 18 C 0.03 1.33 5.50 85.29 0.47 1.80 16 19 N -0.74 -38.72 11.46 21.84 0.25 -38.47 16 20 Si 0.99 37.49 29.56 68.60 2.03 39.52 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 24 C -0.29 -15.02 9.60 22.97 0.22 -14.80 16 25 H 0.10 1.93 7.79 -2.39 -0.02 1.91 16 26 H 0.11 1.77 7.79 -2.39 -0.02 1.75 16 27 H 0.07 1.86 6.93 -2.39 -0.02 1.84 16 28 H 0.08 1.43 7.79 -2.39 -0.02 1.41 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.35 3.81 9.08 -89.69 -0.81 2.99 16 33 H 0.35 3.74 8.99 -89.69 -0.81 2.93 16 34 H 0.42 7.40 9.06 -74.06 -0.67 6.73 16 35 H 0.14 4.73 6.25 -2.91 -0.02 4.71 16 36 H 0.16 5.99 8.06 -2.91 -0.02 5.96 16 37 H 0.28 13.23 8.29 -92.71 -0.77 12.46 16 38 H 0.09 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -70.97 327.76 -1.43 -72.40 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -1.16 Total: 29.05 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 4.77 Total: -14.52 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -5.80 Total: -112.06 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.27 Total: -14.39 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -70.97 -1.43 -72.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170343702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.990 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds