Wall clock time and date at job start Tue Mar 31 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48496 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 299.99421 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99738 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21593 * 120.00264 * 359.72086 * 14 13 12 16 16 C 1.47591 * 119.99522 * 179.72390 * 14 13 12 17 17 C 1.36580 * 125.91359 * 179.71163 * 16 14 13 18 18 N 1.36198 * 107.09023 * 179.84381 * 17 16 14 19 19 C 1.36677 * 132.29522 * 180.02562 * 18 17 16 20 20 C 1.34848 * 120.64344 * 180.37878 * 19 18 17 21 21 C 1.40574 * 120.34008 * 359.97438 * 20 19 18 22 22 C 1.35891 * 119.73097 * 0.02562 * 21 20 19 23 23 C 1.37273 * 107.34209 * 0.41744 * 18 17 16 24 24 N 1.32234 * 108.37713 * 359.73840 * 23 18 17 25 25 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 28 28 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 29 29 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 30 30 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 31 31 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 32 32 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 34 34 H 1.07997 * 126.45357 * 359.97438 * 17 16 14 35 35 H 1.08006 * 119.68130 * 0.40370 * 19 18 17 36 36 H 1.08001 * 119.83176 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.13244 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.32495 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5216 -8.7511 0.0072 16 6 0.3670 -9.6507 0.0129 17 6 0.6871 -10.9785 0.0139 18 7 -0.4846 -11.6727 0.0237 19 6 -0.7606 -13.0113 0.0294 20 6 -2.0356 -13.4502 0.0315 21 6 -3.1019 -12.5341 0.0286 22 6 -2.8441 -11.1999 0.0230 23 6 -1.5046 -10.7540 0.0191 24 7 -0.9745 -9.5425 0.0126 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.6847 -3.7145 0.8905 28 1 2.6848 -3.7145 -0.8895 29 1 0.4375 -4.7619 -0.8903 30 1 0.4368 -4.7621 0.8897 31 1 2.4549 -6.2024 0.8910 32 1 2.4561 -6.2025 -0.8890 33 1 -0.0768 -7.0810 0.0005 34 1 1.6820 -11.3987 0.0099 35 1 0.0505 -13.7245 0.0325 36 1 -2.2387 -14.5109 0.0364 37 1 -4.1218 -12.8893 0.0299 38 1 -3.6560 -10.4877 0.0211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175254647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:51 Heat of formation + Delta-G solvation = 61.495403 kcal Electronic energy + Delta-G solvation = -20785.087305 eV Core-core repulsion = 17436.087782 eV Total energy + Delta-G solvation = -3348.999523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.23347 -39.53738 -37.59270 -35.95726 -34.37511 -34.06359 -31.97101 -30.88091 -29.46398 -29.21458 -25.86153 -24.39933 -23.21304 -23.03620 -22.16252 -21.11701 -20.11020 -18.41752 -17.46470 -17.19731 -16.82864 -16.45961 -15.83721 -15.58017 -15.48281 -15.00094 -14.58197 -14.42544 -14.21987 -13.74960 -13.23426 -12.94064 -12.88124 -12.50104 -12.27492 -12.08182 -11.59429 -11.54427 -10.91026 -10.88750 -10.75872 -10.70835 -10.55949 -10.16533 -9.95647 -9.67007 -9.34976 -8.94549 -8.84145 -8.35156 -6.88665 -5.72981 -3.01696 0.18638 0.77935 1.78782 2.04190 2.94947 3.17533 3.40439 3.46667 3.52141 3.54642 3.66986 4.01976 4.20893 4.37377 4.57616 4.63011 4.83064 4.96313 5.02336 5.21551 5.31424 5.38865 5.51250 5.61840 5.66526 5.71214 5.93795 5.98584 6.07232 6.13721 6.25964 6.38697 6.48014 6.55179 6.85625 6.89808 7.22464 7.61058 7.74673 8.19043 8.46005 9.57054 10.14922 10.49663 11.50138 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.039024 B = 0.002215 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.341051 B =12640.720448 C =13332.293382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.708 5.708 14 C 0.598 3.402 15 O -0.540 6.540 16 C 0.010 3.990 17 C -0.019 4.019 18 N -0.366 5.366 19 C 0.054 3.946 20 C -0.138 4.138 21 C -0.104 4.104 22 C -0.073 4.073 23 C 0.224 3.776 24 N -0.463 5.463 25 H 0.254 0.746 26 H 0.384 0.616 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.410 0.590 34 H 0.197 0.803 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 -32.265 0.056 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.358 5.358 14 C 0.382 3.618 15 O -0.417 6.417 16 C -0.123 4.123 17 C -0.154 4.154 18 N -0.037 5.037 19 C -0.067 4.067 20 C -0.158 4.158 21 C -0.127 4.127 22 C -0.093 4.093 23 C -0.021 4.021 24 N -0.184 5.184 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.246 0.754 34 H 0.214 0.786 35 H 0.183 0.817 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.523 -31.503 0.055 31.983 hybrid contribution 0.074 0.206 0.006 0.219 sum -5.448 -31.296 0.061 31.767 Atomic orbital electron populations 1.69671 1.05120 1.25521 1.57987 1.24763 0.95569 0.97762 1.03134 0.86090 0.78797 0.84025 0.77146 1.20517 1.21878 1.21884 1.19301 0.91137 0.84122 1.42364 0.91024 1.42356 1.05913 1.00000 1.89560 1.20523 0.93257 0.85169 0.98205 1.21949 0.99588 0.93158 1.02946 1.21427 0.91652 0.84432 1.02625 1.45885 1.11556 1.05067 1.73304 1.16869 0.86368 0.81834 0.76713 1.90807 1.15177 1.84725 1.51013 1.20691 0.90842 0.92904 1.07911 1.22630 0.90091 0.91340 1.11328 1.42776 1.08213 1.06873 1.45877 1.21693 0.99357 0.82460 1.03154 1.20876 0.90778 1.01451 1.02733 1.21081 1.00178 0.92169 0.99318 1.20389 0.91913 0.96604 1.00377 1.20992 0.90540 0.84197 1.06380 1.70851 1.06569 1.20258 1.20714 0.93580 0.78267 0.96005 0.96020 0.91166 0.91178 0.91098 0.91082 0.75416 0.78645 0.81659 0.82970 0.83753 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.23 5.60 -59.90 -0.34 -19.56 16 10 C 0.16 3.24 6.26 -4.04 -0.03 3.21 16 11 C -0.14 -2.27 5.44 -26.73 -0.15 -2.42 16 12 C 0.12 1.81 5.67 -4.04 -0.02 1.79 16 13 N -0.71 -9.99 5.55 -61.33 -0.34 -10.33 16 14 C 0.60 8.95 7.82 -12.44 -0.10 8.85 16 15 O -0.54 -9.32 16.87 5.28 0.09 -9.23 16 16 C 0.01 0.13 6.94 -83.44 -0.58 -0.45 16 17 C -0.02 -0.20 11.47 -16.21 -0.19 -0.38 16 18 N -0.37 -3.33 2.93 -62.37 -0.18 -3.51 16 19 C 0.05 0.29 10.93 -16.59 -0.18 0.11 16 20 C -0.14 -0.52 9.98 -39.90 -0.40 -0.92 16 21 C -0.10 -0.47 10.06 -39.54 -0.40 -0.87 16 22 C -0.07 -0.53 10.11 -39.30 -0.40 -0.93 16 23 C 0.22 2.39 7.79 -156.04 -1.22 1.17 16 24 N -0.46 -6.04 11.01 -9.35 -0.10 -6.15 16 25 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.41 5.37 8.17 -40.82 -0.33 5.04 16 34 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.17 0.35 8.06 -52.48 -0.42 -0.07 16 36 H 0.15 0.09 8.06 -52.49 -0.42 -0.33 16 37 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 38 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -36.06 335.00 -8.86 -44.92 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.84 Total: 7.53 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.89 Total: 1.56 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.24 Total: -67.69 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.06 -8.86 -44.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175254647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.417 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds