Wall clock time and date at job start Tue Mar 31 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48496 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 299.99421 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99738 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21593 * 120.00264 * 359.72086 * 14 13 12 16 16 C 1.47591 * 119.99522 * 179.72390 * 14 13 12 17 17 C 1.36580 * 125.91359 * 179.71163 * 16 14 13 18 18 N 1.36198 * 107.09023 * 179.84381 * 17 16 14 19 19 C 1.36677 * 132.29522 * 180.02562 * 18 17 16 20 20 C 1.34848 * 120.64344 * 180.37878 * 19 18 17 21 21 C 1.40574 * 120.34008 * 359.97438 * 20 19 18 22 22 C 1.35891 * 119.73097 * 0.02562 * 21 20 19 23 23 C 1.37273 * 107.34209 * 0.41744 * 18 17 16 24 24 N 1.32234 * 108.37713 * 359.73840 * 23 18 17 25 25 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 28 28 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 29 29 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 30 30 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 31 31 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 32 32 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 34 34 H 1.07997 * 126.45357 * 359.97438 * 17 16 14 35 35 H 1.08006 * 119.68130 * 0.40370 * 19 18 17 36 36 H 1.08001 * 119.83176 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.13244 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.32495 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5216 -8.7511 0.0072 16 6 0.3670 -9.6507 0.0129 17 6 0.6871 -10.9785 0.0139 18 7 -0.4846 -11.6727 0.0237 19 6 -0.7606 -13.0113 0.0294 20 6 -2.0356 -13.4502 0.0315 21 6 -3.1019 -12.5341 0.0286 22 6 -2.8441 -11.1999 0.0230 23 6 -1.5046 -10.7540 0.0191 24 7 -0.9745 -9.5425 0.0126 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.6847 -3.7145 0.8905 28 1 2.6848 -3.7145 -0.8895 29 1 0.4375 -4.7619 -0.8903 30 1 0.4368 -4.7621 0.8897 31 1 2.4549 -6.2024 0.8910 32 1 2.4561 -6.2025 -0.8890 33 1 -0.0768 -7.0810 0.0005 34 1 1.6820 -11.3987 0.0099 35 1 0.0505 -13.7245 0.0325 36 1 -2.2387 -14.5109 0.0364 37 1 -4.1218 -12.8893 0.0299 38 1 -3.6560 -10.4877 0.0211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175254647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:50 Heat of formation + Delta-G solvation = 36.302720 kcal Electronic energy + Delta-G solvation = -20786.179741 eV Core-core repulsion = 17436.087782 eV Total energy + Delta-G solvation = -3350.091959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.90399 -40.65315 -38.19303 -37.50522 -35.95140 -34.75284 -33.75018 -31.81286 -30.93736 -29.88538 -27.32621 -25.58810 -24.33615 -23.64189 -23.42329 -22.58512 -21.21391 -19.31202 -18.98935 -18.06547 -17.77437 -17.24814 -17.03453 -16.69587 -16.49639 -16.15557 -15.52393 -15.49047 -15.30097 -15.22161 -15.03968 -14.54924 -13.91013 -13.32733 -13.25017 -12.86566 -12.78289 -12.68204 -12.60447 -12.45092 -12.10085 -12.08214 -12.04248 -11.80624 -11.56481 -11.22445 -10.96082 -10.26712 -9.89869 -9.02538 -8.95311 -7.96605 -5.26265 -0.33697 0.19177 0.95880 1.42345 1.47491 1.48737 1.59188 2.11915 2.26982 2.56104 2.56279 2.98604 3.37087 3.44247 3.72603 3.74825 3.93293 4.06108 4.15043 4.20107 4.24850 4.28162 4.45385 4.63460 4.69074 4.71611 4.80222 4.85290 5.11762 5.24115 5.24731 5.29652 5.30084 5.35165 5.48889 5.53562 5.93391 6.25825 6.34201 6.63573 7.06364 7.31919 8.06558 8.30487 9.27302 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.039024 B = 0.002215 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.341051 B =12640.720448 C =13332.293382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.748 5.748 10 C 0.154 3.846 11 C -0.119 4.119 12 C 0.133 3.867 13 N -0.705 5.705 14 C 0.598 3.402 15 O -0.570 6.570 16 C -0.025 4.025 17 C -0.016 4.016 18 N -0.367 5.367 19 C 0.038 3.962 20 C -0.127 4.127 21 C -0.077 4.077 22 C -0.109 4.109 23 C 0.212 3.788 24 N -0.503 5.503 25 H 0.252 0.748 26 H 0.375 0.625 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.214 0.786 35 H 0.199 0.801 36 H 0.195 0.805 37 H 0.180 0.820 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 -35.031 0.066 35.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.027 3.973 11 C -0.158 4.158 12 C 0.009 3.991 13 N -0.355 5.355 14 C 0.384 3.616 15 O -0.450 6.450 16 C -0.157 4.157 17 C -0.152 4.152 18 N -0.038 5.038 19 C -0.082 4.082 20 C -0.147 4.147 21 C -0.101 4.101 22 C -0.129 4.129 23 C -0.034 4.034 24 N -0.225 5.225 25 H 0.061 0.939 26 H 0.207 0.793 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.251 0.749 34 H 0.231 0.769 35 H 0.216 0.784 36 H 0.212 0.788 37 H 0.198 0.802 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.964 -34.308 0.065 34.822 hybrid contribution 0.100 0.811 0.004 0.817 sum -5.865 -33.496 0.068 34.006 Atomic orbital electron populations 1.69825 1.06649 1.26138 1.59452 1.25644 0.96525 1.01325 1.03591 0.85009 0.78188 0.79430 0.76738 1.19002 1.21862 1.21874 1.19711 0.91636 0.85323 1.41303 0.90498 1.42573 1.05743 1.01238 1.89549 1.20671 0.93911 0.84479 0.98252 1.21707 0.98602 0.92391 1.03066 1.21216 0.91435 0.83861 1.02573 1.45806 1.11617 1.04875 1.73182 1.17149 0.86392 0.82288 0.75788 1.90767 1.16405 1.85212 1.52637 1.20491 0.90995 0.93281 1.10959 1.22830 0.91255 0.90722 1.10435 1.42936 1.07230 1.08153 1.45472 1.22504 1.01466 0.81212 1.02975 1.21488 0.89710 1.03392 1.00088 1.21624 1.02298 0.90983 0.95168 1.20656 0.90668 0.98304 1.03241 1.21505 0.92035 0.84029 1.05810 1.70734 1.06555 1.22202 1.23024 0.93901 0.79335 0.95650 0.95660 0.91054 0.91072 0.91180 0.91153 0.74895 0.76888 0.78439 0.78776 0.80241 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -39.63 5.60 -343.44 -1.92 -41.56 16 10 C 0.15 6.38 6.26 86.38 0.54 6.92 16 11 C -0.12 -3.96 5.44 30.59 0.17 -3.80 16 12 C 0.13 4.00 5.67 86.38 0.49 4.49 16 13 N -0.70 -20.60 5.55 -466.19 -2.59 -23.19 16 14 C 0.60 18.64 7.82 86.71 0.68 19.32 16 15 O -0.57 -20.33 16.87 -4.01 -0.07 -20.40 16 16 C -0.03 -0.70 6.94 40.80 0.28 -0.41 16 17 C -0.02 -0.34 11.47 83.63 0.96 0.62 16 18 N -0.37 -6.28 2.93 -351.24 -1.03 -7.31 16 19 C 0.04 0.28 10.93 83.16 0.91 1.19 16 20 C -0.13 -0.39 9.98 22.06 0.22 -0.17 16 21 C -0.08 -0.42 10.06 22.29 0.22 -0.19 16 22 C -0.11 -1.44 10.11 22.45 0.23 -1.21 16 23 C 0.21 4.50 7.79 134.20 1.05 5.54 16 24 N -0.50 -13.73 11.01 -183.49 -2.02 -15.75 16 25 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.35 8.14 -2.38 -0.02 2.34 16 31 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.41 11.36 8.17 -92.71 -0.76 10.61 16 34 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.20 0.05 8.06 -2.91 -0.02 0.03 16 36 H 0.20 -0.99 8.06 -2.91 -0.02 -1.01 16 37 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -79.90 335.00 1.36 -78.54 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.37 Total: 26.28 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 7.05 Total: 14.59 kcal Atomic # 7 Polarization: -141.00 SS G_CDS: -7.28 Total: -148.28 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -79.90 1.36 -78.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175254647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.843 kcal (2) G-P(sol) polarization free energy of solvation -79.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds