Wall clock time and date at job start Tue Mar 31 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81399 * 109.46721 * 2 1 4 4 C 1.81405 * 102.99787 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46843 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00290 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99950 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00121 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.64091 * 34.30353 * 9 8 6 11 11 C 1.54331 * 110.72422 * 271.16091 * 9 8 6 12 12 N 1.47017 * 107.27173 * 219.26746 * 11 9 8 13 13 C 1.36932 * 125.64895 * 178.90830 * 12 11 9 14 14 H 1.08003 * 120.00075 * 341.51282 * 13 12 11 15 15 C 1.38811 * 120.00333 * 161.51938 * 13 12 11 16 16 N 1.31626 * 119.99981 * 157.63017 * 15 13 12 17 17 Si 1.86803 * 120.00108 * 337.63363 * 15 13 12 18 18 H 1.48496 * 109.47350 * 84.53375 * 17 15 13 19 19 H 1.48498 * 109.47118 * 204.53604 * 17 15 13 20 20 H 1.48497 * 109.46713 * 324.53514 * 17 15 13 21 21 C 1.47428 * 108.70674 * 358.93941 * 12 11 9 22 22 C 1.54909 * 104.83151 * 24.12822 * 21 12 11 23 23 H 1.09007 * 111.00471 * 81.06358 * 22 21 12 24 24 O 1.42895 * 111.00828 * 204.91865 * 22 21 12 25 25 H 1.08998 * 109.47220 * 60.00475 * 1 2 3 26 26 H 1.09001 * 109.46755 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47274 * 299.99766 * 1 2 3 28 28 H 1.08994 * 109.47274 * 240.00234 * 2 1 3 29 29 H 1.08998 * 109.47220 * 119.99525 * 2 1 3 30 30 H 1.08996 * 109.47359 * 60.00068 * 4 3 2 31 31 H 1.09000 * 109.47227 * 299.99645 * 4 3 2 32 32 H 1.08996 * 109.47071 * 59.99779 * 5 4 3 33 33 H 1.08994 * 109.47118 * 299.99776 * 5 4 3 34 34 H 0.97001 * 119.99741 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.88041 * 338.68164 * 11 9 8 36 36 H 1.08998 * 109.87896 * 99.69547 * 11 9 8 37 37 H 0.97009 * 119.99583 * 179.97438 * 16 15 13 38 38 H 1.08999 * 110.36789 * 142.96693 * 21 12 11 39 39 H 1.08996 * 110.36933 * 265.29241 * 21 12 11 40 40 H 0.96704 * 113.99761 * 292.19567 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 6 4.6064 2.8818 -0.0002 6 6 6.1037 2.7119 -0.0002 7 8 6.5879 1.6000 -0.0002 8 7 6.9049 3.7958 -0.0003 9 6 8.3605 3.6307 0.0002 10 1 8.6475 2.7500 -0.5743 11 6 8.8994 3.5406 1.4436 12 7 10.1630 4.2909 1.4854 13 6 10.9477 4.4712 2.5930 14 1 10.5343 4.3168 3.5787 15 6 12.2746 4.8527 2.4489 16 7 12.9013 5.4437 3.4441 17 14 13.1708 4.5273 0.8425 18 1 12.8887 5.6280 -0.1135 19 1 14.6321 4.4549 1.0968 20 1 12.7041 3.2403 0.2672 21 6 10.4449 4.8177 0.1377 22 6 9.0610 4.8996 -0.5536 23 1 8.5278 5.8022 -0.2546 24 8 9.1935 4.8325 -1.9748 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 4.2399 0.9546 -0.8909 31 1 4.2406 0.9543 0.8890 32 1 4.3035 3.4327 0.8901 33 1 4.3029 3.4338 -0.8897 34 1 6.5176 4.6851 0.0000 35 1 8.1825 3.9831 2.1352 36 1 9.0755 2.4982 1.7090 37 1 13.8287 5.7099 3.3434 38 1 10.8951 5.8081 0.2040 39 1 11.1007 4.1376 -0.4059 40 1 9.6257 5.6039 -2.3664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191306818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:56 Heat of formation + Delta-G solvation = -65.564117 kcal Electronic energy + Delta-G solvation = -20671.154937 eV Core-core repulsion = 17419.796900 eV Total energy + Delta-G solvation = -3251.358037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95174 -38.23552 -35.42621 -34.22170 -33.17872 -33.07215 -31.91932 -28.98568 -27.75976 -25.45262 -24.15125 -23.24314 -21.32959 -20.50461 -20.11093 -17.64593 -17.31740 -16.93006 -16.29109 -16.09123 -15.94670 -15.11371 -14.99936 -14.62442 -14.41584 -13.85176 -13.76059 -13.56943 -13.14791 -12.99169 -12.85235 -12.43248 -12.33520 -12.02652 -11.92374 -11.62704 -11.58076 -11.43350 -11.31858 -10.89116 -10.50665 -10.25979 -10.12250 -9.97700 -9.65654 -9.48588 -9.01717 -8.71537 -7.97381 -7.15758 -6.01593 -3.33850 1.29816 2.27009 2.63848 3.20224 3.26929 3.44531 3.48098 4.17114 4.45982 4.47868 4.55212 4.61206 4.69004 4.75813 4.87107 5.01402 5.12608 5.23898 5.26120 5.31094 5.34374 5.38327 5.40173 5.45342 5.63416 5.68692 5.78669 5.81639 6.27277 6.33031 6.43648 6.56076 6.71540 7.50817 7.57079 7.75501 8.21903 8.24651 8.74194 9.60005 10.04867 11.13974 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.035786 B = 0.002943 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.248347 B = 9512.870549 C = 9908.359682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 S -0.270 6.270 4 C -0.067 4.067 5 C -0.124 4.124 6 C 0.519 3.481 7 O -0.539 6.539 8 N -0.714 5.714 9 C 0.141 3.859 10 H 0.104 0.896 11 C 0.129 3.871 12 N -0.604 5.604 13 C -0.244 4.244 14 H 0.095 0.905 15 C 0.023 3.977 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.286 1.286 19 H -0.300 1.300 20 H -0.275 1.275 21 C 0.085 3.915 22 C 0.082 3.918 23 H 0.074 0.926 24 O -0.562 6.562 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.378 -4.149 -9.850 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.236 4.236 3 S -0.044 6.044 4 C -0.215 4.215 5 C -0.165 4.165 6 C 0.303 3.697 7 O -0.416 6.416 8 N -0.365 5.365 9 C 0.036 3.964 10 H 0.122 0.878 11 C 0.002 3.998 12 N -0.332 5.332 13 C -0.371 4.371 14 H 0.113 0.887 15 C -0.176 4.176 16 N -0.548 5.548 17 Si 0.712 3.288 18 H -0.213 1.213 19 H -0.228 1.228 20 H -0.201 1.201 21 C -0.041 4.041 22 C 0.022 3.978 23 H 0.091 0.909 24 O -0.366 6.366 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.235 0.765 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -21.732 -4.548 -9.602 24.190 hybrid contribution 1.588 -0.295 -0.885 1.842 sum -20.143 -4.843 -10.487 23.221 Atomic orbital electron populations 1.21516 0.92194 1.02558 1.03213 1.23292 1.00113 0.95016 1.05154 1.86770 1.06014 1.13429 1.98211 1.23064 0.91797 1.00007 1.06647 1.21350 0.91807 0.97668 1.05709 1.20415 0.88646 0.84716 0.75875 1.90726 1.76821 1.24700 1.49339 1.45903 1.06539 1.09009 1.75034 1.21998 0.78271 0.98624 0.97496 0.87801 1.21719 0.88965 0.96471 0.92618 1.44590 1.23769 1.59172 1.05672 1.18646 0.91095 1.42392 0.84964 0.88721 1.25017 0.96300 0.99355 0.96917 1.69842 1.12103 1.40480 1.32420 0.87001 0.78591 0.78956 0.84216 1.21317 1.22799 1.20061 1.22602 0.94654 0.99192 0.87636 1.23286 0.97086 0.97074 0.80388 0.90854 1.86472 1.82919 1.47408 1.19828 0.91686 0.91080 0.91629 0.90007 0.89937 0.89223 0.89090 0.87812 0.87974 0.76506 0.94135 0.93913 0.92578 0.91624 0.94379 0.77415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.92 37.16 0.37 -0.44 16 2 C -0.09 -0.64 6.66 37.16 0.25 -0.40 16 3 S -0.27 -2.55 21.74 -107.50 -2.34 -4.88 16 4 C -0.07 -0.67 5.23 37.16 0.19 -0.48 16 5 C -0.12 -1.19 5.71 -27.88 -0.16 -1.35 16 6 C 0.52 7.05 7.83 -10.98 -0.09 6.96 16 7 O -0.54 -9.51 15.67 5.56 0.09 -9.43 16 8 N -0.71 -9.46 5.12 -52.03 -0.27 -9.72 16 9 C 0.14 2.41 3.01 -66.09 -0.20 2.21 16 10 H 0.10 2.00 7.62 -51.93 -0.40 1.60 16 11 C 0.13 2.61 6.99 -3.06 -0.02 2.59 16 12 N -0.60 -14.47 3.21 -170.07 -0.55 -15.02 16 13 C -0.24 -6.87 10.57 -15.06 -0.16 -7.03 16 14 H 0.10 2.82 8.06 -52.48 -0.42 2.40 16 15 C 0.02 0.67 5.43 -17.43 -0.09 0.57 16 16 N -0.91 -27.58 13.97 55.49 0.78 -26.80 16 17 Si 0.88 22.38 24.27 -169.99 -4.13 18.26 16 18 H -0.29 -6.82 6.49 56.52 0.37 -6.46 16 19 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 20 H -0.27 -7.03 6.66 56.52 0.38 -6.66 16 21 C 0.09 1.80 4.43 -2.53 -0.01 1.79 16 22 C 0.08 1.34 4.05 -24.58 -0.10 1.24 16 23 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 24 O -0.56 -8.28 13.47 -35.23 -0.47 -8.76 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.09 0.99 8.10 -51.92 -0.42 0.57 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.06 8.55 -40.82 -0.35 3.71 16 35 H 0.04 0.79 8.03 -51.93 -0.42 0.38 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.07 1.42 6.63 -51.93 -0.34 1.08 16 39 H 0.04 0.87 5.58 -51.93 -0.29 0.58 16 40 H 0.38 3.92 9.12 45.56 0.42 4.34 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -33.98 338.77 -7.44 -41.42 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.64 Total: 4.16 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.02 Total: 5.67 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.04 Total: -51.54 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.39 Total: -18.19 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.13 Total: 18.26 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.34 Total: -4.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.98 -7.44 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191306818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.146 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds