Wall clock time and date at job start Tue Mar 31 2020 02:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81399 * 109.46721 * 2 1 4 4 C 1.81405 * 102.99787 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46843 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00290 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99950 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00121 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.64091 * 34.30353 * 9 8 6 11 11 C 1.54331 * 110.72422 * 271.16091 * 9 8 6 12 12 N 1.47017 * 107.27173 * 219.26746 * 11 9 8 13 13 C 1.36932 * 125.64895 * 178.90830 * 12 11 9 14 14 H 1.08003 * 120.00075 * 341.51282 * 13 12 11 15 15 C 1.38811 * 120.00333 * 161.51938 * 13 12 11 16 16 N 1.31626 * 119.99981 * 157.63017 * 15 13 12 17 17 Si 1.86803 * 120.00108 * 337.63363 * 15 13 12 18 18 H 1.48496 * 109.47350 * 84.53375 * 17 15 13 19 19 H 1.48498 * 109.47118 * 204.53604 * 17 15 13 20 20 H 1.48497 * 109.46713 * 324.53514 * 17 15 13 21 21 C 1.47428 * 108.70674 * 358.93941 * 12 11 9 22 22 C 1.54909 * 104.83151 * 24.12822 * 21 12 11 23 23 H 1.09007 * 111.00471 * 81.06358 * 22 21 12 24 24 O 1.42895 * 111.00828 * 204.91865 * 22 21 12 25 25 H 1.08998 * 109.47220 * 60.00475 * 1 2 3 26 26 H 1.09001 * 109.46755 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47274 * 299.99766 * 1 2 3 28 28 H 1.08994 * 109.47274 * 240.00234 * 2 1 3 29 29 H 1.08998 * 109.47220 * 119.99525 * 2 1 3 30 30 H 1.08996 * 109.47359 * 60.00068 * 4 3 2 31 31 H 1.09000 * 109.47227 * 299.99645 * 4 3 2 32 32 H 1.08996 * 109.47071 * 59.99779 * 5 4 3 33 33 H 1.08994 * 109.47118 * 299.99776 * 5 4 3 34 34 H 0.97001 * 119.99741 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.88041 * 338.68164 * 11 9 8 36 36 H 1.08998 * 109.87896 * 99.69547 * 11 9 8 37 37 H 0.97009 * 119.99583 * 179.97438 * 16 15 13 38 38 H 1.08999 * 110.36789 * 142.96693 * 21 12 11 39 39 H 1.08996 * 110.36933 * 265.29241 * 21 12 11 40 40 H 0.96704 * 113.99761 * 292.19567 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 6 4.6064 2.8818 -0.0002 6 6 6.1037 2.7119 -0.0002 7 8 6.5879 1.6000 -0.0002 8 7 6.9049 3.7958 -0.0003 9 6 8.3605 3.6307 0.0002 10 1 8.6475 2.7500 -0.5743 11 6 8.8994 3.5406 1.4436 12 7 10.1630 4.2909 1.4854 13 6 10.9477 4.4712 2.5930 14 1 10.5343 4.3168 3.5787 15 6 12.2746 4.8527 2.4489 16 7 12.9013 5.4437 3.4441 17 14 13.1708 4.5273 0.8425 18 1 12.8887 5.6280 -0.1135 19 1 14.6321 4.4549 1.0968 20 1 12.7041 3.2403 0.2672 21 6 10.4449 4.8177 0.1377 22 6 9.0610 4.8996 -0.5536 23 1 8.5278 5.8022 -0.2546 24 8 9.1935 4.8325 -1.9748 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 4.2399 0.9546 -0.8909 31 1 4.2406 0.9543 0.8890 32 1 4.3035 3.4327 0.8901 33 1 4.3029 3.4338 -0.8897 34 1 6.5176 4.6851 0.0000 35 1 8.1825 3.9831 2.1352 36 1 9.0755 2.4982 1.7090 37 1 13.8287 5.7099 3.3434 38 1 10.8951 5.8081 0.2040 39 1 11.1007 4.1376 -0.4059 40 1 9.6257 5.6039 -2.3664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191306818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:55 Heat of formation + Delta-G solvation = -92.811090 kcal Electronic energy + Delta-G solvation = -20672.336454 eV Core-core repulsion = 17419.796900 eV Total energy + Delta-G solvation = -3252.539554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18318 -39.63513 -36.84313 -35.63346 -34.16709 -33.76489 -33.64993 -30.62942 -29.33130 -26.73558 -25.47070 -24.00693 -22.96926 -21.86065 -21.37931 -19.18020 -18.74379 -18.20485 -17.67235 -17.00121 -16.90338 -16.57870 -16.01224 -15.74461 -15.56108 -15.44204 -14.93921 -14.77379 -14.63219 -14.39476 -13.99734 -13.72584 -13.66385 -13.29411 -13.03739 -12.97243 -12.73705 -12.53305 -12.37474 -12.27970 -12.20682 -11.69960 -11.64972 -11.27607 -10.96108 -10.92717 -10.80307 -10.20546 -9.17159 -8.69792 -8.23402 -5.52808 0.58728 1.24296 1.37827 1.45734 1.56334 1.57351 2.09380 2.35282 2.79139 3.06509 3.36813 3.55034 3.65216 3.80128 3.92283 3.95907 3.98523 4.02119 4.08317 4.24866 4.40910 4.50640 4.53911 4.67197 4.69824 4.80898 4.84730 4.88064 4.88933 4.91914 4.92346 5.23290 5.38578 5.57542 6.03712 6.48328 6.64550 6.79209 7.19316 7.44275 7.97096 8.95766 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.035786 B = 0.002943 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.248347 B = 9512.870549 C = 9908.359682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 S -0.282 6.282 4 C -0.064 4.064 5 C -0.112 4.112 6 C 0.518 3.482 7 O -0.584 6.584 8 N -0.701 5.701 9 C 0.153 3.847 10 H 0.082 0.918 11 C 0.128 3.872 12 N -0.620 5.620 13 C -0.240 4.240 14 H 0.063 0.937 15 C -0.031 4.031 16 N -0.950 5.950 17 Si 0.944 3.056 18 H -0.257 1.257 19 H -0.306 1.306 20 H -0.281 1.281 21 C 0.076 3.924 22 C 0.107 3.893 23 H 0.106 0.894 24 O -0.564 6.564 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.420 0.580 35 H 0.049 0.951 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.396 -3.363 -12.075 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.235 4.235 3 S -0.056 6.056 4 C -0.213 4.213 5 C -0.152 4.152 6 C 0.304 3.696 7 O -0.464 6.464 8 N -0.353 5.353 9 C 0.046 3.954 10 H 0.100 0.900 11 C 0.002 3.998 12 N -0.348 5.348 13 C -0.369 4.369 14 H 0.080 0.920 15 C -0.226 4.226 16 N -0.596 5.596 17 Si 0.772 3.228 18 H -0.182 1.182 19 H -0.234 1.234 20 H -0.207 1.207 21 C -0.049 4.049 22 C 0.046 3.954 23 H 0.124 0.876 24 O -0.371 6.371 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.258 0.742 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -23.798 -3.715 -11.875 26.855 hybrid contribution 2.117 -0.612 -0.148 2.208 sum -21.681 -4.327 -12.023 25.167 Atomic orbital electron populations 1.21524 0.90999 1.03632 1.03044 1.23411 1.01045 0.93471 1.05536 1.86761 1.05156 1.15491 1.98213 1.22972 0.92552 1.00159 1.05604 1.21342 0.88256 0.97828 1.07782 1.21136 0.90229 0.83850 0.74371 1.90716 1.77873 1.26535 1.51253 1.45711 1.04760 1.10232 1.74628 1.21541 0.80580 0.98532 0.94697 0.89989 1.21784 0.87840 0.94739 0.95428 1.44637 1.24172 1.60157 1.05849 1.18568 0.91739 1.41130 0.85429 0.91952 1.25618 0.97032 0.99693 1.00275 1.69953 1.12422 1.42408 1.34788 0.85996 0.76655 0.79191 0.80912 1.18242 1.23388 1.20744 1.22741 0.97690 0.98233 0.86285 1.22974 0.93816 0.97577 0.80998 0.87601 1.86448 1.83106 1.49217 1.18366 0.91741 0.89363 0.91872 0.89523 0.89719 0.90096 0.90415 0.85850 0.85498 0.74188 0.93291 0.96215 0.92596 0.91967 0.95658 0.74801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.92 71.98 0.71 -0.62 16 2 C -0.09 -1.14 6.66 71.98 0.48 -0.66 16 3 S -0.28 -4.82 21.74 -56.49 -1.23 -6.05 16 4 C -0.06 -1.21 5.23 71.98 0.38 -0.84 16 5 C -0.11 -1.85 5.71 29.85 0.17 -1.68 16 6 C 0.52 13.16 7.83 87.66 0.69 13.84 16 7 O -0.58 -20.48 15.67 -3.03 -0.05 -20.52 16 8 N -0.70 -16.77 5.12 -436.90 -2.24 -19.01 16 9 C 0.15 4.98 3.01 46.19 0.14 5.12 16 10 H 0.08 3.09 7.62 -2.39 -0.02 3.07 16 11 C 0.13 5.19 6.99 86.73 0.61 5.80 16 12 N -0.62 -29.66 3.21 -692.00 -2.22 -31.88 16 13 C -0.24 -13.84 10.57 84.03 0.89 -12.95 16 14 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 15 C -0.03 -1.81 5.43 84.86 0.46 -1.35 16 16 N -0.95 -59.22 13.97 21.65 0.30 -58.91 16 17 Si 0.94 46.53 24.27 68.60 1.66 48.19 16 18 H -0.26 -11.36 6.49 99.48 0.65 -10.72 16 19 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 20 H -0.28 -14.01 6.66 99.48 0.66 -13.35 16 21 C 0.08 3.07 4.43 86.85 0.38 3.45 16 22 C 0.11 3.14 4.05 31.99 0.13 3.27 16 23 H 0.11 2.51 8.01 -2.38 -0.02 2.49 16 24 O -0.56 -14.42 13.47 -148.98 -2.01 -16.42 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.42 6.85 8.55 -92.71 -0.79 6.06 16 35 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 38 H 0.06 2.55 6.63 -2.39 -0.02 2.53 16 39 H 0.03 1.11 5.58 -2.39 -0.01 1.10 16 40 H 0.40 6.48 9.12 -74.05 -0.68 5.81 16 Total: -1.00 -75.61 338.77 -1.26 -76.87 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.53 Total: 14.34 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 5.04 Total: 13.39 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.15 Total: -109.80 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -2.05 Total: -36.94 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.66 Total: 48.19 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -1.23 Total: -6.05 kcal Total: -75.61 -1.26 -76.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191306818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.938 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds