Wall clock time and date at job start Tue Mar 31 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53002 * 109.47079 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46919 * 64.99630 * 4 3 2 6 6 C 1.42903 * 113.99797 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47280 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99752 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00109 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.63883 * 34.29913 * 10 9 7 12 12 C 1.54323 * 110.72390 * 271.16255 * 10 9 7 13 13 N 1.47016 * 107.27270 * 219.44421 * 12 10 9 14 14 C 1.36939 * 125.65207 * 178.97594 * 13 12 10 15 15 H 1.07995 * 119.99806 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00280 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46825 * 60.00071 * 18 16 14 20 20 H 1.48502 * 109.47260 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46926 * 299.99916 * 18 16 14 22 22 C 1.47431 * 108.70455 * 358.93632 * 13 12 10 23 23 C 1.55125 * 104.93731 * 24.00518 * 22 13 12 24 24 H 1.08995 * 110.93683 * 81.21631 * 23 22 13 25 25 O 1.42905 * 111.15851 * 205.13164 * 23 22 13 26 26 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 27 27 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 28 28 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99711 * 3 2 1 30 30 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 31 31 H 1.08997 * 109.47011 * 184.99710 * 4 3 2 32 32 H 1.09005 * 109.46847 * 304.99836 * 4 3 2 33 33 H 1.08998 * 109.47133 * 300.00285 * 6 5 4 34 34 H 1.09009 * 109.46982 * 60.00047 * 6 5 4 35 35 H 0.96993 * 119.99908 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.87904 * 338.86049 * 12 10 9 37 37 H 1.08997 * 109.88504 * 100.02061 * 12 10 9 38 38 H 0.97006 * 119.99379 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.36790 * 142.96403 * 22 13 12 40 40 H 1.08995 * 110.36845 * 265.18458 * 22 13 12 41 41 H 0.96698 * 113.99734 * 292.16918 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3811 0.4192 -1.3246 7 6 5.7194 -0.2241 -2.6446 8 8 4.8347 -0.5168 -3.4210 9 7 7.0051 -0.4742 -2.9626 10 6 7.3339 -1.1001 -4.2456 11 1 6.6422 -0.7722 -5.0216 12 6 7.3252 -2.6382 -4.1211 13 7 8.4507 -3.1471 -4.9184 14 6 8.8021 -4.4637 -5.0537 15 1 8.2320 -5.2294 -4.5487 16 6 9.8911 -4.8142 -5.8399 17 7 10.5856 -3.8810 -6.4558 18 14 10.3709 -6.6101 -6.0238 19 1 9.2401 -7.3660 -6.6198 20 1 11.5583 -6.7171 -6.9091 21 1 10.6953 -7.1750 -4.6893 22 6 9.1377 -2.0053 -5.5491 23 6 8.7993 -0.7881 -4.6490 24 1 9.4477 -0.7590 -3.7734 25 8 8.8790 0.4349 -5.3838 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 3.9784 2.1766 0.0889 32 1 3.8514 0.5683 0.8410 33 1 5.8628 1.3950 -1.2623 34 1 5.7350 -0.2133 -0.5104 35 1 7.7125 -0.2404 -2.3416 36 1 7.4503 -2.9263 -3.0773 37 1 6.3870 -3.0362 -4.5077 38 1 11.3464 -4.1261 -7.0055 39 1 10.2143 -2.1750 -5.5703 40 1 8.7596 -1.8457 -6.5588 41 1 9.7758 0.6714 -5.6576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191881172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:19 Heat of formation + Delta-G solvation = -137.758488 kcal Electronic energy + Delta-G solvation = -23043.555441 eV Core-core repulsion = 19346.313951 eV Total energy + Delta-G solvation = -3697.241491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.76012 -38.55854 -37.81682 -36.94976 -35.07169 -34.00128 -31.79905 -30.87449 -28.84656 -27.67952 -26.63579 -26.23371 -24.29030 -22.80839 -20.90660 -20.49661 -19.92305 -17.43650 -17.33299 -17.09088 -16.83467 -16.63937 -15.91801 -15.74766 -15.32326 -15.27823 -14.65631 -14.31205 -13.97539 -13.82022 -13.30932 -12.91324 -12.85813 -12.61167 -12.39660 -12.19471 -11.85203 -11.65365 -11.49702 -11.31988 -11.24671 -10.99249 -10.81314 -10.21296 -9.95396 -9.91613 -9.87613 -9.73959 -9.66965 -9.24658 -8.75672 -8.71119 -6.91521 -5.71717 -3.14044 2.81461 2.85184 3.39195 3.43342 3.44707 3.51507 3.90112 4.40739 4.61604 4.67265 4.83838 4.88112 4.98207 5.03296 5.08325 5.09293 5.15090 5.21338 5.29664 5.42242 5.43466 5.46680 5.62921 5.67092 5.86495 6.09941 6.19941 6.49019 6.69997 6.78730 6.91804 6.99705 7.32125 7.52874 7.68347 7.75032 8.09655 8.25818 8.45136 9.14545 9.74908 10.37442 11.32582 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003019 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.811702 B = 9273.609133 C =10133.174110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.045 3.955 7 C 0.512 3.488 8 O -0.517 6.517 9 N -0.715 5.715 10 C 0.144 3.856 11 H 0.101 0.899 12 C 0.129 3.871 13 N -0.600 5.600 14 C -0.222 4.222 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.919 3.081 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.130 3.870 23 C 0.067 3.933 24 H 0.062 0.938 25 O -0.565 6.565 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.254 0.746 39 H 0.113 0.887 40 H 0.025 0.975 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 13.554 14.568 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.272 6.272 6 C -0.035 4.035 7 C 0.297 3.703 8 O -0.391 6.391 9 N -0.368 5.368 10 C 0.039 3.961 11 H 0.119 0.881 12 C 0.002 3.998 13 N -0.328 5.328 14 C -0.350 4.350 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.574 5.574 18 Si 0.749 3.251 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.004 3.996 23 C 0.007 3.993 24 H 0.080 0.920 25 O -0.370 6.370 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.043 0.957 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.942 12.980 13.837 21.902 hybrid contribution 1.152 -0.465 0.343 1.289 sum -9.790 12.515 14.180 21.297 Atomic orbital electron populations 1.22744 0.81070 1.02960 0.99737 1.87996 1.19601 1.27089 1.95334 1.22538 0.92204 0.85721 1.00874 1.22588 0.93723 0.97544 0.87732 1.88101 1.19595 1.82001 1.37482 1.22208 0.84040 1.00748 0.96496 1.20154 0.82993 0.79212 0.87968 1.90744 1.46725 1.50837 1.50838 1.45860 1.07156 1.63040 1.20708 1.22008 0.96217 0.93312 0.84560 0.88127 1.21637 0.92419 0.90076 0.95637 1.44286 1.30259 1.02835 1.55426 1.19073 1.09648 0.81581 1.24739 0.90217 1.24803 0.98256 0.98170 0.99416 1.69730 1.21537 1.30428 1.35713 0.86087 0.77731 0.83770 0.77535 1.21086 1.21525 1.21094 1.22582 1.01841 0.82608 0.92573 1.23669 0.94687 0.85969 0.95021 0.92016 1.86418 1.33680 1.40728 1.76189 0.94329 0.93936 0.89521 0.92218 0.91784 0.91601 0.92192 0.90440 0.90219 0.76839 0.95128 0.94753 0.93552 0.86952 0.95659 0.77595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.58 10.67 -40.09 -0.43 -5.01 16 3 C 0.06 0.58 6.32 37.16 0.23 0.81 16 4 C 0.06 0.57 6.32 37.16 0.23 0.80 16 5 O -0.35 -4.93 9.84 -59.73 -0.59 -5.52 16 6 C 0.05 0.53 6.42 36.00 0.23 0.76 16 7 C 0.51 8.37 7.91 -10.99 -0.09 8.28 16 8 O -0.52 -11.08 16.18 -14.36 -0.23 -11.32 16 9 N -0.71 -10.95 5.12 -52.03 -0.27 -11.22 16 10 C 0.14 2.78 3.00 -66.10 -0.20 2.58 16 11 H 0.10 2.19 7.62 -51.93 -0.40 1.79 16 12 C 0.13 2.88 7.00 -3.07 -0.02 2.86 16 13 N -0.60 -15.52 3.40 -169.94 -0.58 -16.09 16 14 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.93 -26.48 10.09 55.49 0.56 -25.92 16 18 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.13 3.10 5.63 -2.41 -0.01 3.09 16 23 C 0.07 1.25 4.06 -24.47 -0.10 1.15 16 24 H 0.06 1.05 8.00 -51.93 -0.42 0.64 16 25 O -0.57 -9.67 13.48 -35.23 -0.47 -10.14 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.40 4.68 8.54 -40.82 -0.35 4.33 16 36 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.11 2.92 5.88 -51.93 -0.31 2.61 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.38 4.85 9.12 45.56 0.42 5.26 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -36.33 345.96 -6.34 -42.66 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.66 Total: 5.46 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 1.14 Total: 14.93 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.28 Total: -53.23 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.72 Total: -31.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.33 -6.34 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191881172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.094 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds