Wall clock time and date at job start Tue Mar 31 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53002 * 109.47079 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46919 * 64.99630 * 4 3 2 6 6 C 1.42903 * 113.99797 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47280 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99752 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00109 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.63883 * 34.29913 * 10 9 7 12 12 C 1.54323 * 110.72390 * 271.16255 * 10 9 7 13 13 N 1.47016 * 107.27270 * 219.44421 * 12 10 9 14 14 C 1.36939 * 125.65207 * 178.97594 * 13 12 10 15 15 H 1.07995 * 119.99806 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00280 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46825 * 60.00071 * 18 16 14 20 20 H 1.48502 * 109.47260 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46926 * 299.99916 * 18 16 14 22 22 C 1.47431 * 108.70455 * 358.93632 * 13 12 10 23 23 C 1.55125 * 104.93731 * 24.00518 * 22 13 12 24 24 H 1.08995 * 110.93683 * 81.21631 * 23 22 13 25 25 O 1.42905 * 111.15851 * 205.13164 * 23 22 13 26 26 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 27 27 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 28 28 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99711 * 3 2 1 30 30 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 31 31 H 1.08997 * 109.47011 * 184.99710 * 4 3 2 32 32 H 1.09005 * 109.46847 * 304.99836 * 4 3 2 33 33 H 1.08998 * 109.47133 * 300.00285 * 6 5 4 34 34 H 1.09009 * 109.46982 * 60.00047 * 6 5 4 35 35 H 0.96993 * 119.99908 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.87904 * 338.86049 * 12 10 9 37 37 H 1.08997 * 109.88504 * 100.02061 * 12 10 9 38 38 H 0.97006 * 119.99379 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.36790 * 142.96403 * 22 13 12 40 40 H 1.08995 * 110.36845 * 265.18458 * 22 13 12 41 41 H 0.96698 * 113.99734 * 292.16918 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3811 0.4192 -1.3246 7 6 5.7194 -0.2241 -2.6446 8 8 4.8347 -0.5168 -3.4210 9 7 7.0051 -0.4742 -2.9626 10 6 7.3339 -1.1001 -4.2456 11 1 6.6422 -0.7722 -5.0216 12 6 7.3252 -2.6382 -4.1211 13 7 8.4507 -3.1471 -4.9184 14 6 8.8021 -4.4637 -5.0537 15 1 8.2320 -5.2294 -4.5487 16 6 9.8911 -4.8142 -5.8399 17 7 10.5856 -3.8810 -6.4558 18 14 10.3709 -6.6101 -6.0238 19 1 9.2401 -7.3660 -6.6198 20 1 11.5583 -6.7171 -6.9091 21 1 10.6953 -7.1750 -4.6893 22 6 9.1377 -2.0053 -5.5491 23 6 8.7993 -0.7881 -4.6490 24 1 9.4477 -0.7590 -3.7734 25 8 8.8790 0.4349 -5.3838 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 3.9784 2.1766 0.0889 32 1 3.8514 0.5683 0.8410 33 1 5.8628 1.3950 -1.2623 34 1 5.7350 -0.2133 -0.5104 35 1 7.7125 -0.2404 -2.3416 36 1 7.4503 -2.9263 -3.0773 37 1 6.3870 -3.0362 -4.5077 38 1 11.3464 -4.1261 -7.0055 39 1 10.2143 -2.1750 -5.5703 40 1 8.7596 -1.8457 -6.5588 41 1 9.7758 0.6714 -5.6576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191881172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:18 Heat of formation + Delta-G solvation = -168.846936 kcal Electronic energy + Delta-G solvation = -23044.903537 eV Core-core repulsion = 19346.313951 eV Total energy + Delta-G solvation = -3698.589587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10398 -39.64746 -39.04299 -37.90708 -36.69332 -35.58342 -33.68225 -31.68844 -30.43799 -29.19884 -27.96293 -27.07732 -26.13318 -23.48439 -22.58750 -22.03868 -21.48134 -19.14565 -18.59705 -18.08516 -17.98336 -17.79282 -17.21355 -16.83602 -16.60705 -16.15820 -16.05234 -15.73290 -15.37870 -15.21353 -14.87827 -14.66425 -14.02546 -13.81385 -13.64289 -13.34921 -13.21365 -13.15685 -12.95699 -12.79333 -12.70198 -12.34206 -12.10737 -11.99922 -11.93153 -11.44415 -11.15728 -10.80612 -10.74958 -10.69216 -10.60168 -10.20185 -8.98618 -7.82797 -5.29370 1.47009 1.50564 1.56102 1.57399 1.75673 2.46213 2.89357 2.97852 3.07398 3.28721 3.61229 3.68042 3.88798 4.05029 4.11462 4.19230 4.24522 4.26245 4.34737 4.42112 4.45690 4.48590 4.57848 4.59744 4.60586 4.79914 4.82811 4.85835 4.92914 5.36962 5.42215 5.43273 5.67106 6.06836 6.20448 6.28413 6.55956 6.87814 7.04097 7.23698 7.67789 8.30144 9.18806 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003019 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.811702 B = 9273.609133 C =10133.174110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.055 3.945 4 C 0.055 3.945 5 O -0.398 6.398 6 C 0.053 3.947 7 C 0.506 3.494 8 O -0.578 6.578 9 N -0.698 5.698 10 C 0.156 3.844 11 H 0.072 0.928 12 C 0.131 3.869 13 N -0.619 5.619 14 C -0.247 4.247 15 H 0.080 0.920 16 C -0.061 4.061 17 N -0.946 5.946 18 Si 0.985 3.015 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.273 1.273 22 C 0.132 3.868 23 C 0.094 3.906 24 H 0.094 0.906 25 O -0.568 6.568 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.420 0.580 36 H 0.044 0.956 37 H 0.009 0.991 38 H 0.251 0.749 39 H 0.093 0.907 40 H -0.011 1.011 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 14.757 17.035 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.021 4.021 4 C -0.021 4.021 5 O -0.317 6.317 6 C -0.026 4.026 7 C 0.293 3.707 8 O -0.456 6.456 9 N -0.352 5.352 10 C 0.050 3.950 11 H 0.090 0.910 12 C 0.004 3.996 13 N -0.347 5.347 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.253 4.253 17 N -0.595 5.595 18 Si 0.812 3.188 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.198 1.198 22 C 0.006 3.994 23 C 0.033 3.967 24 H 0.111 0.889 25 O -0.375 6.375 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.258 0.742 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.007 0.993 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.310 14.227 16.355 24.004 hybrid contribution 0.912 -0.805 -0.446 1.295 sum -9.398 13.422 15.909 22.838 Atomic orbital electron populations 1.22885 0.79764 1.03480 1.00860 1.87938 1.21334 1.29050 1.95597 1.22790 0.92400 0.84885 1.02013 1.22893 0.93771 0.99170 0.86235 1.88050 1.20776 1.82978 1.39943 1.22288 0.83798 1.02864 0.93654 1.21187 0.82179 0.78089 0.89216 1.90723 1.48414 1.53375 1.53117 1.45610 1.08000 1.62118 1.19499 1.21509 0.96063 0.91447 0.86030 0.91029 1.21680 0.90251 0.92205 0.95469 1.44545 1.31390 1.02871 1.55868 1.19413 1.10038 0.82852 1.25236 0.90223 1.25643 0.98231 1.02305 0.99170 1.69952 1.21608 1.32065 1.35921 0.85069 0.77066 0.78888 0.77772 1.20955 1.21495 1.19816 1.22430 1.00197 0.84626 0.92099 1.23267 0.94327 0.84364 0.94699 0.88878 1.86391 1.35818 1.39216 1.76123 0.92009 0.93947 0.89446 0.93092 0.88479 0.88253 0.91227 0.86301 0.87190 0.74205 0.93820 0.97260 0.93902 0.88922 0.99327 0.75166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.42 -9.79 10.67 -144.34 -1.54 -11.33 16 3 C 0.06 0.91 6.32 71.98 0.45 1.37 16 4 C 0.06 0.87 6.32 71.98 0.45 1.32 16 5 O -0.40 -10.41 9.84 -125.55 -1.24 -11.65 16 6 C 0.05 1.07 6.42 71.23 0.46 1.52 16 7 C 0.51 15.90 7.91 87.66 0.69 16.60 16 8 O -0.58 -25.28 16.18 16.00 0.26 -25.02 16 9 N -0.70 -20.03 5.12 -436.93 -2.24 -22.27 16 10 C 0.16 6.00 3.00 46.18 0.14 6.13 16 11 H 0.07 3.21 7.62 -2.39 -0.02 3.19 16 12 C 0.13 5.91 7.00 86.73 0.61 6.52 16 13 N -0.62 -32.67 3.40 -691.57 -2.35 -35.02 16 14 C -0.25 -14.04 10.27 84.03 0.86 -13.17 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 17 N -0.95 -55.03 10.09 21.65 0.22 -54.81 16 18 Si 0.98 45.33 29.55 68.60 2.03 47.35 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 C 0.13 6.46 5.63 86.93 0.49 6.95 16 23 C 0.09 3.41 4.06 32.06 0.13 3.54 16 24 H 0.09 2.87 8.00 -2.39 -0.02 2.85 16 25 O -0.57 -18.44 13.48 -148.98 -2.01 -20.45 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.42 8.34 8.54 -92.71 -0.79 7.55 16 36 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 37 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 38 H 0.25 14.13 8.31 -92.70 -0.77 13.35 16 39 H 0.09 4.90 5.88 -2.39 -0.01 4.89 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.40 9.35 9.12 -74.06 -0.68 8.68 16 Total: -1.00 -82.81 345.96 -1.28 -84.09 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.42 Total: 19.61 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 6.00 Total: 29.50 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -4.37 Total: -112.10 kcal Atomic # 8 Polarization: -63.93 SS G_CDS: -4.52 Total: -68.45 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -82.81 -1.28 -84.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191881172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.752 kcal (2) G-P(sol) polarization free energy of solvation -82.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds