Wall clock time and date at job start Tue Mar 31 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99680 * 2 1 4 4 H 1.08996 * 109.47772 * 54.99922 * 3 2 1 5 5 C 1.53007 * 109.46911 * 294.99530 * 3 2 1 6 6 C 1.53003 * 109.46929 * 175.00122 * 3 2 1 7 7 C 1.50701 * 109.47134 * 294.99852 * 6 3 2 8 8 O 1.21276 * 119.99682 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00080 * 179.97438 * 7 6 3 10 10 C 1.46505 * 119.99993 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.77487 * 31.76564 * 10 9 7 12 12 C 1.54315 * 110.71985 * 268.52513 * 10 9 7 13 13 N 1.47023 * 107.27241 * 219.44430 * 12 10 9 14 14 C 1.36933 * 125.65507 * 178.99274 * 13 12 10 15 15 H 1.08004 * 119.99383 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00263 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47177 * 59.99668 * 18 16 14 20 20 H 1.48505 * 109.46838 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46722 * 299.99425 * 18 16 14 22 22 C 1.47426 * 108.69981 * 358.93706 * 13 12 10 23 23 C 1.54907 * 104.82942 * 24.13288 * 22 13 12 24 24 H 1.09005 * 111.04094 * 81.08152 * 23 22 13 25 25 O 1.42903 * 111.00431 * 204.90944 * 23 22 13 26 26 H 1.08994 * 109.47356 * 60.00391 * 1 2 3 27 27 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47593 * 300.00084 * 1 2 3 29 29 H 1.08996 * 109.47222 * 300.00728 * 5 3 2 30 30 H 1.09003 * 109.46792 * 60.00534 * 5 3 2 31 31 H 1.08995 * 109.46728 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47132 * 174.99276 * 6 3 2 33 33 H 1.09005 * 109.47191 * 54.99687 * 6 3 2 34 34 H 0.96999 * 120.00093 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.88697 * 338.85905 * 12 10 9 36 36 H 1.08998 * 109.88724 * 99.87186 * 12 10 9 37 37 H 0.96999 * 120.00355 * 179.97438 * 17 16 14 38 38 H 1.08994 * 110.37345 * 265.29076 * 22 13 12 39 39 H 1.09007 * 110.36591 * 142.96519 * 22 13 12 40 40 H 0.96700 * 114.00311 * 292.19952 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8417 5 6 1.7427 2.4015 -1.3075 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4271 1.4672 8 8 3.3840 0.9674 2.2462 9 7 5.4966 1.4780 1.8013 10 6 5.9388 0.9787 3.1057 11 1 5.3112 0.1510 3.4358 12 6 5.9419 2.1129 4.1520 13 7 7.1363 1.9307 4.9898 14 6 7.5163 2.7422 6.0252 15 1 6.9173 3.6027 6.2847 16 6 8.6712 2.4589 6.7413 17 7 9.4007 1.4101 6.4255 18 14 9.1898 3.5665 8.1534 19 1 8.1228 3.5847 9.1860 20 1 10.4476 3.0504 8.7509 21 1 9.4113 4.9445 7.6460 22 6 7.8564 0.7288 4.5313 23 6 7.4291 0.5505 3.0530 24 1 8.0016 1.2074 2.3981 25 8 7.5562 -0.8129 2.6440 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2353 1.9148 -2.1492 30 1 0.6635 2.2777 -1.3970 31 1 1.9883 3.4634 -1.3076 32 1 3.9901 2.9976 0.0365 33 1 4.2339 1.3804 -0.6659 34 1 6.1427 1.8460 1.1784 35 1 5.9848 3.0798 3.6506 36 1 5.0431 2.0534 4.7659 37 1 10.2080 1.2123 6.9256 38 1 7.5590 -0.1392 5.1195 39 1 8.9334 0.8830 4.5988 40 1 8.4700 -1.1257 2.5964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192306134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:39 Heat of formation + Delta-G solvation = -59.365575 kcal Electronic energy + Delta-G solvation = -21178.423472 eV Core-core repulsion = 17927.334224 eV Total energy + Delta-G solvation = -3251.089248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.68520 -37.83987 -35.07856 -34.67644 -33.93256 -31.72142 -29.49888 -28.61801 -27.76921 -26.66250 -24.40141 -22.42411 -20.70943 -20.30135 -19.87935 -17.33014 -17.00239 -16.68022 -16.56062 -15.66992 -15.37313 -14.77821 -14.32923 -14.25918 -13.83635 -13.72805 -13.50393 -13.30588 -12.94959 -12.83986 -12.50264 -12.27290 -12.13128 -11.80447 -11.56049 -11.49661 -11.37717 -11.23498 -10.98569 -10.82094 -10.21639 -9.91502 -9.86671 -9.72157 -9.66102 -9.22443 -8.71573 -8.68573 -7.49266 -6.91677 -5.71804 -3.14399 1.64450 2.53736 2.91887 3.35216 3.38813 3.42586 3.44179 4.40758 4.44173 4.61134 4.64887 4.97061 5.00951 5.05369 5.11617 5.23946 5.30663 5.34508 5.41363 5.44552 5.55458 5.66191 5.68393 5.69881 5.84693 5.89992 6.12829 6.23105 6.53623 6.68508 6.97881 7.33565 7.52629 7.69883 7.80070 8.12939 8.26431 8.51694 9.14097 9.74687 10.37499 11.32267 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.003410 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.257338 B = 8209.244408 C = 8587.991306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.236 6.236 3 C -0.045 4.045 4 H 0.094 0.906 5 C -0.147 4.147 6 C -0.124 4.124 7 C 0.506 3.494 8 O -0.518 6.518 9 N -0.717 5.717 10 C 0.143 3.857 11 H 0.102 0.898 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.224 4.224 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.924 5.924 18 Si 0.918 3.082 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.130 3.870 23 C 0.067 3.933 24 H 0.060 0.940 25 O -0.565 6.565 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.396 0.604 35 H 0.029 0.971 36 H 0.032 0.968 37 H 0.254 0.746 38 H 0.025 0.975 39 H 0.112 0.888 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.822 0.784 -17.074 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.010 6.010 3 C -0.174 4.174 4 H 0.112 0.888 5 C -0.206 4.206 6 C -0.165 4.165 7 C 0.291 3.709 8 O -0.393 6.393 9 N -0.368 5.368 10 C 0.038 3.962 11 H 0.120 0.880 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.352 4.352 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.004 3.996 23 C 0.006 3.994 24 H 0.078 0.922 25 O -0.370 6.370 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.230 0.770 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.130 0.870 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.239 -0.382 -16.348 19.843 hybrid contribution 0.335 1.738 0.529 1.848 sum -10.905 1.356 -15.819 19.261 Atomic orbital electron populations 1.23372 0.95349 1.06148 1.04482 1.87040 1.06146 1.10084 1.97692 1.22866 0.97932 0.95247 1.01347 0.88757 1.22109 1.01445 1.00904 0.96165 1.21527 0.94526 1.03629 0.96835 1.20405 0.82594 0.79138 0.88741 1.90756 1.52542 1.44249 1.51791 1.45952 1.08178 1.63989 1.18706 1.21969 0.94792 0.96994 0.82455 0.88044 1.21619 0.91434 0.95009 0.91617 1.44282 1.23429 1.28916 1.36154 1.19062 1.05596 1.04762 1.05769 0.90284 1.24798 0.97733 0.98189 0.99848 1.69729 1.17191 1.27969 1.42395 0.86101 0.77740 0.79579 0.81772 1.21104 1.21510 1.21105 1.22544 1.01126 0.89032 0.86923 1.23639 0.94791 0.82132 0.98790 0.92194 1.86431 1.31979 1.27717 1.90830 0.90975 0.88404 0.90577 0.91266 0.92321 0.91576 0.87633 0.88225 0.77012 0.95329 0.95001 0.93543 0.95680 0.87038 0.77700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.45 101.05 1.06 -0.10 16 2 S -0.24 -2.99 20.24 -107.50 -2.18 -5.17 16 3 C -0.04 -0.47 2.44 -26.73 -0.07 -0.54 16 4 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 5 C -0.15 -1.09 9.10 37.16 0.34 -0.75 16 6 C -0.12 -1.28 5.17 -27.88 -0.14 -1.43 16 7 C 0.51 7.68 7.54 -10.99 -0.08 7.60 16 8 O -0.52 -9.92 14.44 5.56 0.08 -9.84 16 9 N -0.72 -10.89 5.10 -52.04 -0.27 -11.16 16 10 C 0.14 2.75 3.05 -66.10 -0.20 2.55 16 11 H 0.10 2.22 7.55 -51.93 -0.39 1.83 16 12 C 0.13 2.86 6.99 -3.07 -0.02 2.84 16 13 N -0.60 -15.45 3.39 -170.08 -0.58 -16.03 16 14 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 15 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 18 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 3.12 5.62 -2.53 -0.01 3.10 16 23 C 0.07 1.27 4.06 -24.59 -0.10 1.17 16 24 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 25 O -0.56 -9.98 13.47 -35.23 -0.47 -10.46 16 26 H 0.07 0.53 7.14 -51.93 -0.37 0.16 16 27 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.40 6.92 -51.93 -0.36 0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.40 4.83 8.56 -40.82 -0.35 4.48 16 35 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.11 2.92 5.88 -51.92 -0.31 2.61 16 40 H 0.38 5.06 9.12 45.56 0.42 5.47 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -33.50 338.25 -7.80 -41.30 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.53 Total: 7.61 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 0.51 Total: 7.68 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.28 Total: -53.07 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.39 Total: -20.29 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.18 Total: -5.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.50 -7.80 -41.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192306134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.062 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds