Wall clock time and date at job start Tue Mar 31 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99680 * 2 1 4 4 H 1.08996 * 109.47772 * 54.99922 * 3 2 1 5 5 C 1.53007 * 109.46911 * 294.99530 * 3 2 1 6 6 C 1.53003 * 109.46929 * 175.00122 * 3 2 1 7 7 C 1.50701 * 109.47134 * 294.99852 * 6 3 2 8 8 O 1.21276 * 119.99682 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00080 * 179.97438 * 7 6 3 10 10 C 1.46505 * 119.99993 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.77487 * 31.76564 * 10 9 7 12 12 C 1.54315 * 110.71985 * 268.52513 * 10 9 7 13 13 N 1.47023 * 107.27241 * 219.44430 * 12 10 9 14 14 C 1.36933 * 125.65507 * 178.99274 * 13 12 10 15 15 H 1.08004 * 119.99383 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00263 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47177 * 59.99668 * 18 16 14 20 20 H 1.48505 * 109.46838 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46722 * 299.99425 * 18 16 14 22 22 C 1.47426 * 108.69981 * 358.93706 * 13 12 10 23 23 C 1.54907 * 104.82942 * 24.13288 * 22 13 12 24 24 H 1.09005 * 111.04094 * 81.08152 * 23 22 13 25 25 O 1.42903 * 111.00431 * 204.90944 * 23 22 13 26 26 H 1.08994 * 109.47356 * 60.00391 * 1 2 3 27 27 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47593 * 300.00084 * 1 2 3 29 29 H 1.08996 * 109.47222 * 300.00728 * 5 3 2 30 30 H 1.09003 * 109.46792 * 60.00534 * 5 3 2 31 31 H 1.08995 * 109.46728 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47132 * 174.99276 * 6 3 2 33 33 H 1.09005 * 109.47191 * 54.99687 * 6 3 2 34 34 H 0.96999 * 120.00093 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.88697 * 338.85905 * 12 10 9 36 36 H 1.08998 * 109.88724 * 99.87186 * 12 10 9 37 37 H 0.96999 * 120.00355 * 179.97438 * 17 16 14 38 38 H 1.08994 * 110.37345 * 265.29076 * 22 13 12 39 39 H 1.09007 * 110.36591 * 142.96519 * 22 13 12 40 40 H 0.96700 * 114.00311 * 292.19952 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8417 5 6 1.7427 2.4015 -1.3075 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4271 1.4672 8 8 3.3840 0.9674 2.2462 9 7 5.4966 1.4780 1.8013 10 6 5.9388 0.9787 3.1057 11 1 5.3112 0.1510 3.4358 12 6 5.9419 2.1129 4.1520 13 7 7.1363 1.9307 4.9898 14 6 7.5163 2.7422 6.0252 15 1 6.9173 3.6027 6.2847 16 6 8.6712 2.4589 6.7413 17 7 9.4007 1.4101 6.4255 18 14 9.1898 3.5665 8.1534 19 1 8.1228 3.5847 9.1860 20 1 10.4476 3.0504 8.7509 21 1 9.4113 4.9445 7.6460 22 6 7.8564 0.7288 4.5313 23 6 7.4291 0.5505 3.0530 24 1 8.0016 1.2074 2.3981 25 8 7.5562 -0.8129 2.6440 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2353 1.9148 -2.1492 30 1 0.6635 2.2777 -1.3970 31 1 1.9883 3.4634 -1.3076 32 1 3.9901 2.9976 0.0365 33 1 4.2339 1.3804 -0.6659 34 1 6.1427 1.8460 1.1784 35 1 5.9848 3.0798 3.6506 36 1 5.0431 2.0534 4.7659 37 1 10.2080 1.2123 6.9256 38 1 7.5590 -0.1392 5.1195 39 1 8.9334 0.8830 4.5988 40 1 8.4700 -1.1257 2.5964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192306134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:39 Heat of formation + Delta-G solvation = -85.261363 kcal Electronic energy + Delta-G solvation = -21179.546397 eV Core-core repulsion = 17927.334224 eV Total energy + Delta-G solvation = -3252.212173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02210 -39.41025 -36.69657 -35.67746 -35.34613 -33.60667 -30.64405 -29.91552 -29.08842 -28.10139 -26.25524 -23.37133 -22.43472 -21.77504 -21.27746 -19.11429 -18.49264 -17.95169 -17.60705 -17.23836 -16.67794 -16.27359 -15.75921 -15.46071 -15.16360 -14.94873 -14.72808 -14.59743 -14.27425 -13.98597 -13.77569 -13.54080 -13.26978 -13.21116 -13.02308 -12.92340 -12.71609 -12.69722 -12.31230 -12.14123 -12.09886 -11.92702 -11.42825 -11.14581 -10.79249 -10.74832 -10.64019 -10.09022 -8.98091 -8.45007 -7.82184 -5.28990 0.83703 1.47109 1.50605 1.56889 1.72929 1.74590 2.13987 2.47509 3.09083 3.29098 3.60635 3.64908 3.70440 3.91337 4.06160 4.20140 4.24986 4.29335 4.32389 4.36752 4.44080 4.58325 4.62417 4.66866 4.78666 4.83967 4.89121 4.98443 5.04315 5.29019 5.36709 5.43124 5.52280 5.66936 6.20282 6.61772 6.86593 7.03990 7.35050 7.68443 8.31047 9.19358 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.003410 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.257338 B = 8209.244408 C = 8587.991306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.316 6.316 3 C -0.032 4.032 4 H 0.077 0.923 5 C -0.139 4.139 6 C -0.115 4.115 7 C 0.501 3.499 8 O -0.563 6.563 9 N -0.707 5.707 10 C 0.158 3.842 11 H 0.070 0.930 12 C 0.133 3.867 13 N -0.619 5.619 14 C -0.247 4.247 15 H 0.082 0.918 16 C -0.061 4.061 17 N -0.947 5.947 18 Si 0.985 3.015 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.272 1.272 22 C 0.133 3.867 23 C 0.091 3.909 24 H 0.089 0.911 25 O -0.570 6.570 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.415 0.585 35 H 0.044 0.956 36 H 0.011 0.989 37 H 0.251 0.749 38 H -0.012 1.012 39 H 0.091 0.909 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 2.440 -19.217 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.090 6.090 3 C -0.161 4.161 4 H 0.095 0.905 5 C -0.198 4.198 6 C -0.155 4.155 7 C 0.288 3.712 8 O -0.441 6.441 9 N -0.359 5.359 10 C 0.051 3.949 11 H 0.088 0.912 12 C 0.006 3.994 13 N -0.347 5.347 14 C -0.376 4.376 15 H 0.099 0.901 16 C -0.254 4.254 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.198 1.198 22 C 0.007 3.993 23 C 0.031 3.969 24 H 0.106 0.894 25 O -0.377 6.377 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.160 0.840 33 H 0.137 0.863 34 H 0.252 0.748 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.060 0.940 38 H 0.006 0.994 39 H 0.109 0.891 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.435 1.284 -18.546 21.826 hybrid contribution 0.342 1.177 1.221 1.730 sum -11.094 2.462 -17.326 20.720 Atomic orbital electron populations 1.23362 0.91985 1.06908 1.05377 1.87250 1.10163 1.13748 1.97864 1.22911 0.97910 0.92743 1.02567 0.90469 1.22062 1.01780 1.01723 0.94216 1.21617 0.94422 1.05722 0.93738 1.21337 0.81795 0.77985 0.90071 1.90746 1.53645 1.46093 1.53634 1.45776 1.09009 1.63853 1.17291 1.21441 0.94495 0.95108 0.83863 0.91157 1.21672 0.89266 0.96765 0.91697 1.44543 1.24761 1.28974 1.36388 1.19429 1.05976 1.05327 1.06839 0.90063 1.25650 0.97778 0.99660 1.02298 1.69957 1.17245 1.29247 1.43146 0.85069 0.76953 0.78198 0.78569 1.20868 1.21639 1.19771 1.22366 0.99727 0.87214 0.89951 1.23275 0.94519 0.83433 0.95723 0.89364 1.86404 1.34082 1.26940 1.90260 0.88691 0.87792 0.90945 0.90560 0.91825 0.89541 0.83977 0.86260 0.74778 0.93789 0.97095 0.93963 0.99443 0.89125 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.45 113.37 1.19 -0.69 16 2 S -0.32 -7.84 20.24 -56.49 -1.14 -8.98 16 3 C -0.03 -0.61 2.44 30.60 0.07 -0.54 16 4 H 0.08 1.73 7.95 -2.39 -0.02 1.71 16 5 C -0.14 -1.58 9.10 71.98 0.66 -0.92 16 6 C -0.11 -2.03 5.17 29.85 0.15 -1.88 16 7 C 0.50 14.55 7.54 87.66 0.66 15.21 16 8 O -0.56 -21.81 14.44 -3.02 -0.04 -21.86 16 9 N -0.71 -20.25 5.10 -436.94 -2.23 -22.48 16 10 C 0.16 6.05 3.05 46.17 0.14 6.20 16 11 H 0.07 3.18 7.55 -2.39 -0.02 3.16 16 12 C 0.13 5.88 6.99 86.73 0.61 6.48 16 13 N -0.62 -32.49 3.39 -692.00 -2.35 -34.84 16 14 C -0.25 -13.95 10.27 84.03 0.86 -13.09 16 15 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 16 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 17 N -0.95 -55.22 10.09 21.65 0.22 -55.00 16 18 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 C 0.13 6.58 5.62 86.85 0.49 7.07 16 23 C 0.09 3.40 4.06 31.98 0.13 3.53 16 24 H 0.09 2.86 8.01 -2.38 -0.02 2.84 16 25 O -0.57 -19.52 13.47 -148.98 -2.01 -21.52 16 26 H 0.09 1.19 7.14 -2.39 -0.02 1.17 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.68 6.92 -2.39 -0.02 0.66 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.42 8.78 8.56 -92.71 -0.79 7.99 16 35 H 0.04 1.82 8.03 -2.39 -0.02 1.80 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.09 4.86 5.88 -2.38 -0.01 4.85 16 40 H 0.40 10.06 9.12 -74.06 -0.68 9.38 16 Total: -1.00 -75.66 338.25 -0.52 -76.18 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.42 Total: 22.98 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.42 Total: 18.41 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -4.36 Total: -112.32 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.05 Total: -43.38 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.14 Total: -8.98 kcal Total: -75.66 -0.52 -76.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192306134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.080 kcal (2) G-P(sol) polarization free energy of solvation -75.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds