Wall clock time and date at job start Tue Mar 31 2020 03:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47646 * 305.00069 * 4 3 2 6 6 O 1.42904 * 109.47224 * 65.00060 * 4 3 2 7 7 C 1.42895 * 113.99934 * 269.99946 * 6 4 3 8 8 C 1.50705 * 109.46986 * 184.99663 * 4 3 2 9 9 O 1.21278 * 120.00057 * 245.00010 * 8 4 3 10 10 N 1.34772 * 119.99547 * 65.00413 * 8 4 3 11 11 C 1.46501 * 119.99581 * 179.97438 * 10 8 4 12 12 H 1.08999 * 110.89029 * 31.12022 * 11 10 8 13 13 C 1.54909 * 111.00636 * 267.19357 * 11 10 8 14 14 N 1.47426 * 104.83480 * 204.91942 * 13 11 10 15 15 C 1.36942 * 125.64639 * 204.11006 * 14 13 11 16 16 H 1.07994 * 119.99941 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99769 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46995 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47039 * 119.99986 * 19 17 15 22 22 H 1.48500 * 109.47341 * 239.99919 * 19 17 15 23 23 C 1.47015 * 108.70127 * 24.12647 * 14 13 11 24 24 C 1.54317 * 107.27502 * 358.94341 * 23 14 13 25 25 H 1.09001 * 110.87810 * 96.23834 * 24 23 14 26 26 O 1.42898 * 110.72341 * 219.44172 * 24 23 14 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 31 31 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 32 32 H 1.09003 * 109.47152 * 60.00088 * 7 6 4 33 33 H 1.08996 * 109.47253 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.47327 * 299.99864 * 7 6 4 35 35 H 0.96999 * 120.00260 * 359.97438 * 10 8 4 36 36 H 1.09003 * 110.36712 * 323.75978 * 13 11 10 37 37 H 1.09003 * 110.36787 * 86.07865 * 13 11 10 38 38 H 0.97000 * 119.99701 * 179.97438 * 18 17 15 39 39 H 1.09006 * 109.88409 * 239.52277 * 23 14 13 40 40 H 1.09002 * 110.00889 * 118.43665 * 23 14 13 41 41 H 0.96703 * 114.00398 * 293.52302 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5686 0.8426 6 8 3.9659 0.5792 -1.2201 7 6 4.0473 -0.8463 -1.1648 8 6 4.1479 2.5561 0.1244 9 8 4.8068 3.0104 -0.7868 10 7 3.9634 3.2775 1.2477 11 6 4.5592 4.6104 1.3682 12 1 4.6257 5.0959 0.3946 13 6 5.9486 4.5381 2.0496 14 7 6.1452 5.8709 2.6483 15 6 7.3541 6.4438 2.9411 16 1 8.2693 5.9096 2.7329 17 6 7.4030 7.7111 3.5055 18 7 6.2875 8.3622 3.7587 19 14 9.0519 8.4923 3.9055 20 1 10.1454 7.5612 3.5280 21 1 9.1962 9.7602 3.1459 22 1 9.1249 8.7764 5.3613 23 6 4.8286 6.4828 2.8793 24 6 3.7648 5.4860 2.3731 25 1 3.3798 4.8793 3.1928 26 8 2.7006 6.1741 1.7129 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.0653 -1.2575 -0.9306 33 1 4.3803 -1.2290 -2.1295 34 1 4.7579 -1.1400 -0.3921 35 1 3.4361 2.9143 1.9763 36 1 5.9521 3.7703 2.8233 37 1 6.7236 4.3363 1.3102 38 1 6.3217 9.2476 4.1534 39 1 4.7525 7.4189 2.3259 40 1 4.6854 6.6690 3.9437 41 1 2.1729 6.7356 2.2972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196011497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:49 Heat of formation + Delta-G solvation = -137.423214 kcal Electronic energy + Delta-G solvation = -23817.046314 eV Core-core repulsion = 20119.819362 eV Total energy + Delta-G solvation = -3697.226952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13821 -38.60754 -37.73511 -36.96588 -35.09997 -34.12768 -31.97389 -30.84011 -28.37326 -27.36180 -26.97573 -26.04659 -24.58013 -23.53353 -20.78078 -20.50786 -20.16084 -17.80096 -17.37376 -16.89377 -16.85324 -16.54149 -15.94526 -15.66699 -15.46305 -14.77821 -14.42082 -14.30328 -14.16414 -14.00910 -13.39192 -13.04477 -12.79279 -12.70305 -12.51428 -12.11474 -12.05937 -11.75443 -11.51668 -11.36474 -11.27771 -10.90450 -10.83752 -10.15318 -10.10378 -9.96351 -9.94689 -9.86774 -9.61365 -9.30890 -8.89143 -8.65492 -6.93395 -5.78023 -3.12557 2.55281 2.84317 3.38251 3.44286 3.45537 3.46651 3.94286 4.42104 4.56491 4.59117 4.74830 4.79667 4.96667 5.04574 5.09964 5.16305 5.23889 5.33929 5.40332 5.42323 5.44713 5.54603 5.63529 5.67874 5.78282 6.03946 6.09034 6.45531 6.58534 6.71330 6.79275 6.94172 7.29753 7.44706 7.59739 7.72262 8.08004 8.15340 8.31620 9.13493 9.73456 10.36087 11.33835 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028187 B = 0.003581 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.135438 B = 7817.851457 C = 8526.274035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.045 3.955 4 C 0.078 3.922 5 H 0.094 0.906 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.517 3.483 9 O -0.509 6.509 10 N -0.713 5.713 11 C 0.138 3.862 12 H 0.107 0.893 13 C 0.129 3.871 14 N -0.600 5.600 15 C -0.228 4.228 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.924 5.924 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.153 3.847 24 C 0.069 3.931 25 H 0.057 0.943 26 O -0.563 6.563 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.397 0.603 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.253 0.747 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 -16.186 -3.246 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.032 4.032 4 C 0.016 3.984 5 H 0.112 0.888 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.300 3.700 9 O -0.382 6.382 10 N -0.365 5.365 11 C 0.033 3.967 12 H 0.125 0.875 13 C 0.002 3.998 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.571 5.571 19 Si 0.746 3.254 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.028 3.972 24 C 0.009 3.991 25 H 0.075 0.925 26 O -0.368 6.368 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.231 0.769 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.867 -16.031 -4.539 20.456 hybrid contribution 0.017 0.614 1.427 1.553 sum -11.850 -15.417 -3.112 19.693 Atomic orbital electron populations 1.22773 0.80604 1.02820 1.00336 1.87836 1.20132 1.27237 1.95523 1.23049 0.92558 0.85586 1.02054 1.21922 0.92347 0.93846 0.90303 0.88802 1.88026 1.87750 1.20090 1.31321 1.22943 1.01072 0.80423 1.02336 1.19993 0.81343 0.85880 0.82750 1.90756 1.38583 1.70167 1.38713 1.45887 1.54366 1.18272 1.18000 1.22310 0.93112 0.80403 1.00851 0.87498 1.21856 0.93483 0.89385 0.95082 1.44249 1.02420 1.13535 1.72559 1.19147 0.83453 0.98460 1.34577 0.90041 1.24819 0.97481 0.96974 1.01112 1.69929 1.24593 1.13654 1.48953 0.85986 0.82661 0.79163 0.77608 1.20391 1.21641 1.21727 1.21818 0.82193 0.93544 0.99657 1.23466 0.88437 0.94192 0.93030 0.92470 1.86468 1.45909 1.64583 1.39852 0.93829 0.89503 0.93815 0.91504 0.91674 0.92340 0.89604 0.94141 0.76926 0.95790 0.93063 0.93699 0.92041 0.93281 0.77658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.81 8.83 -40.08 -0.35 -4.17 16 3 C 0.04 0.47 5.57 37.16 0.21 0.67 16 4 C 0.08 0.97 2.91 -27.88 -0.08 0.88 16 5 H 0.09 0.95 7.79 -51.93 -0.40 0.55 16 6 O -0.35 -5.04 9.88 -59.70 -0.59 -5.63 16 7 C 0.03 0.29 10.71 101.05 1.08 1.37 16 8 C 0.52 8.19 7.18 -10.99 -0.08 8.11 16 9 O -0.51 -10.54 16.15 -14.30 -0.23 -10.77 16 10 N -0.71 -10.34 5.10 -51.73 -0.26 -10.60 16 11 C 0.14 2.57 3.15 -65.78 -0.21 2.37 16 12 H 0.11 2.32 7.54 -51.93 -0.39 1.93 16 13 C 0.13 2.74 6.93 -2.53 -0.02 2.73 16 14 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 15 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 16 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 19 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.15 3.59 5.15 -3.07 -0.02 3.57 16 24 C 0.07 1.23 3.98 -24.90 -0.10 1.13 16 25 H 0.06 0.88 8.00 -51.93 -0.42 0.46 16 26 O -0.56 -9.45 13.39 -35.23 -0.47 -9.92 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.56 7.77 -51.93 -0.40 0.16 16 32 H 0.06 0.56 6.40 -51.93 -0.33 0.22 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.37 8.09 -51.92 -0.42 -0.05 16 35 H 0.40 4.36 8.27 -40.82 -0.34 4.02 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.06 1.63 7.29 -51.93 -0.38 1.25 16 40 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.38 4.74 9.12 45.56 0.42 5.15 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -34.88 341.16 -5.71 -40.59 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.56 Total: 4.88 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 1.65 Total: 15.33 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.27 Total: -52.48 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.65 Total: -30.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.88 -5.71 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196011497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.835 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds