Wall clock time and date at job start Tue Mar 31 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47646 * 305.00069 * 4 3 2 6 6 O 1.42904 * 109.47224 * 65.00060 * 4 3 2 7 7 C 1.42895 * 113.99934 * 269.99946 * 6 4 3 8 8 C 1.50705 * 109.46986 * 184.99663 * 4 3 2 9 9 O 1.21278 * 120.00057 * 245.00010 * 8 4 3 10 10 N 1.34772 * 119.99547 * 65.00413 * 8 4 3 11 11 C 1.46501 * 119.99581 * 179.97438 * 10 8 4 12 12 H 1.08999 * 110.89029 * 31.12022 * 11 10 8 13 13 C 1.54909 * 111.00636 * 267.19357 * 11 10 8 14 14 N 1.47426 * 104.83480 * 204.91942 * 13 11 10 15 15 C 1.36942 * 125.64639 * 204.11006 * 14 13 11 16 16 H 1.07994 * 119.99941 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99769 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99793 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46995 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47039 * 119.99986 * 19 17 15 22 22 H 1.48500 * 109.47341 * 239.99919 * 19 17 15 23 23 C 1.47015 * 108.70127 * 24.12647 * 14 13 11 24 24 C 1.54317 * 107.27502 * 358.94341 * 23 14 13 25 25 H 1.09001 * 110.87810 * 96.23834 * 24 23 14 26 26 O 1.42898 * 110.72341 * 219.44172 * 24 23 14 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 31 31 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 32 32 H 1.09003 * 109.47152 * 60.00088 * 7 6 4 33 33 H 1.08996 * 109.47253 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.47327 * 299.99864 * 7 6 4 35 35 H 0.96999 * 120.00260 * 359.97438 * 10 8 4 36 36 H 1.09003 * 110.36712 * 323.75978 * 13 11 10 37 37 H 1.09003 * 110.36787 * 86.07865 * 13 11 10 38 38 H 0.97000 * 119.99701 * 179.97438 * 18 17 15 39 39 H 1.09006 * 109.88409 * 239.52277 * 23 14 13 40 40 H 1.09002 * 110.00889 * 118.43665 * 23 14 13 41 41 H 0.96703 * 114.00398 * 293.52302 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5686 0.8426 6 8 3.9659 0.5792 -1.2201 7 6 4.0473 -0.8463 -1.1648 8 6 4.1479 2.5561 0.1244 9 8 4.8068 3.0104 -0.7868 10 7 3.9634 3.2775 1.2477 11 6 4.5592 4.6104 1.3682 12 1 4.6257 5.0959 0.3946 13 6 5.9486 4.5381 2.0496 14 7 6.1452 5.8709 2.6483 15 6 7.3541 6.4438 2.9411 16 1 8.2693 5.9096 2.7329 17 6 7.4030 7.7111 3.5055 18 7 6.2875 8.3622 3.7587 19 14 9.0519 8.4923 3.9055 20 1 10.1454 7.5612 3.5280 21 1 9.1962 9.7602 3.1459 22 1 9.1249 8.7764 5.3613 23 6 4.8286 6.4828 2.8793 24 6 3.7648 5.4860 2.3731 25 1 3.3798 4.8793 3.1928 26 8 2.7006 6.1741 1.7129 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.0653 -1.2575 -0.9306 33 1 4.3803 -1.2290 -2.1295 34 1 4.7579 -1.1400 -0.3921 35 1 3.4361 2.9143 1.9763 36 1 5.9521 3.7703 2.8233 37 1 6.7236 4.3363 1.3102 38 1 6.3217 9.2476 4.1534 39 1 4.7525 7.4189 2.3259 40 1 4.6854 6.6690 3.9437 41 1 2.1729 6.7356 2.2972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196011497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:48 Heat of formation + Delta-G solvation = -166.975260 kcal Electronic energy + Delta-G solvation = -23818.327787 eV Core-core repulsion = 20119.819362 eV Total energy + Delta-G solvation = -3698.508425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38102 -39.85049 -38.92069 -37.88983 -36.67794 -35.65817 -33.76604 -31.98956 -30.07236 -28.75341 -27.92679 -26.90814 -26.28030 -24.61402 -22.43409 -22.01889 -21.57883 -19.21955 -18.70290 -18.30338 -18.01765 -17.57232 -17.15508 -16.78754 -16.47192 -16.23397 -15.84039 -15.71985 -15.46923 -15.01857 -14.83959 -14.47346 -14.23975 -14.10130 -13.77502 -13.47736 -13.20269 -13.16940 -12.83225 -12.77293 -12.72565 -12.41924 -12.15266 -12.05763 -11.89977 -11.55379 -11.20562 -10.92640 -10.79659 -10.76966 -10.50069 -10.25216 -8.97369 -7.89549 -5.26568 1.36485 1.45622 1.47201 1.57130 1.66859 2.46482 2.67974 2.97489 3.12111 3.31755 3.53449 3.64063 3.78029 3.89841 3.94305 4.05470 4.18763 4.29177 4.44091 4.44217 4.54279 4.55043 4.58937 4.64065 4.71361 4.81411 4.88722 4.95150 4.96597 5.34830 5.38884 5.44695 5.66652 6.00661 6.08088 6.13276 6.45633 6.87764 7.04424 7.12048 7.68694 8.30651 9.20222 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028187 B = 0.003581 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.135438 B = 7817.851457 C = 8526.274035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.051 3.949 4 C 0.084 3.916 5 H 0.123 0.877 6 O -0.390 6.390 7 C 0.026 3.974 8 C 0.517 3.483 9 O -0.565 6.565 10 N -0.693 5.693 11 C 0.152 3.848 12 H 0.071 0.929 13 C 0.130 3.870 14 N -0.622 5.622 15 C -0.248 4.248 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.947 5.947 19 Si 0.980 3.020 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.287 1.287 23 C 0.160 3.840 24 C 0.093 3.907 25 H 0.100 0.900 26 O -0.569 6.569 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.420 0.580 36 H 0.048 0.952 37 H 0.032 0.968 38 H 0.249 0.751 39 H 0.020 0.980 40 H 0.028 0.972 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.061 -18.096 -2.244 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.026 4.026 4 C 0.022 3.978 5 H 0.141 0.859 6 O -0.308 6.308 7 C -0.069 4.069 8 C 0.302 3.698 9 O -0.442 6.442 10 N -0.347 5.347 11 C 0.045 3.955 12 H 0.090 0.910 13 C 0.003 3.997 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.595 5.595 19 Si 0.808 3.192 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.213 1.213 23 C 0.034 3.966 24 C 0.033 3.967 25 H 0.118 0.882 26 O -0.377 6.377 27 H 0.061 0.939 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -13.137 -17.990 -3.507 22.551 hybrid contribution 0.361 1.165 1.074 1.625 sum -12.776 -16.826 -2.432 21.266 Atomic orbital electron populations 1.22977 0.79018 1.04163 1.00966 1.87802 1.21756 1.26614 1.95631 1.22919 0.91047 0.86153 1.02503 1.21913 0.93467 0.91538 0.90863 0.85945 1.87985 1.88153 1.22200 1.32452 1.23100 1.01931 0.78510 1.03401 1.20710 0.80243 0.86952 0.81853 1.90736 1.41140 1.71668 1.40669 1.45586 1.53865 1.16545 1.18663 1.21777 0.92362 0.82424 0.98906 0.91031 1.21955 0.94561 0.88109 0.95088 1.44516 1.02508 1.15157 1.72831 1.19480 0.84682 0.99004 1.34473 0.90122 1.25637 1.00845 0.97515 1.01411 1.70127 1.26301 1.13603 1.49517 0.84989 0.79076 0.77930 0.77183 1.19270 1.21999 1.21321 1.21639 0.83342 0.93678 0.97915 1.23154 0.87248 0.92801 0.93505 0.88230 1.86436 1.45382 1.65069 1.40803 0.93867 0.87885 0.92521 0.92985 0.89326 0.91527 0.88749 0.92965 0.74220 0.93435 0.94958 0.94142 0.96212 0.95361 0.75296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.66 8.83 -144.34 -1.27 -7.94 16 3 C 0.05 0.93 5.57 71.98 0.40 1.33 16 4 C 0.08 1.90 2.91 29.85 0.09 1.98 16 5 H 0.12 2.05 7.79 -2.39 -0.02 2.03 16 6 O -0.39 -10.64 9.88 -125.59 -1.24 -11.88 16 7 C 0.03 0.48 10.71 113.37 1.21 1.70 16 8 C 0.52 15.79 7.18 87.66 0.63 16.42 16 9 O -0.56 -23.80 16.15 15.97 0.26 -23.54 16 10 N -0.69 -18.60 5.10 -435.96 -2.22 -20.82 16 11 C 0.15 5.55 3.15 46.38 0.15 5.70 16 12 H 0.07 3.18 7.54 -2.39 -0.02 3.17 16 13 C 0.13 5.47 6.93 86.85 0.60 6.07 16 14 N -0.62 -32.14 3.39 -691.99 -2.35 -34.49 16 15 C -0.25 -14.05 10.28 84.03 0.86 -13.19 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 18 N -0.95 -55.80 10.31 21.65 0.22 -55.58 16 19 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 23 C 0.16 7.58 5.15 86.73 0.45 8.03 16 24 C 0.09 3.18 3.98 31.78 0.13 3.31 16 25 H 0.10 2.65 8.00 -2.39 -0.02 2.63 16 26 O -0.57 -18.08 13.39 -148.98 -1.99 -20.08 16 27 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.17 7.77 -2.39 -0.02 1.16 16 32 H 0.07 1.11 6.40 -2.39 -0.02 1.09 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 0.82 8.09 -2.38 -0.02 0.81 16 35 H 0.42 7.54 8.27 -92.71 -0.77 6.77 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.02 1.08 7.29 -2.38 -0.02 1.07 16 40 H 0.03 1.44 7.51 -2.39 -0.02 1.42 16 41 H 0.40 9.12 9.12 -74.06 -0.68 8.44 16 Total: -1.00 -78.61 341.16 -0.74 -79.35 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.39 Total: 17.23 kcal Atomic # 6 Polarization: 23.66 SS G_CDS: 6.23 Total: 29.89 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.35 Total: -110.89 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -4.25 Total: -63.44 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -78.61 -0.74 -79.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196011497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.622 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds