Wall clock time and date at job start Tue Mar 31 2020 03:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47228 * 2 1 4 4 H 1.09001 * 109.47501 * 305.00314 * 3 2 1 5 5 F 1.39900 * 109.47100 * 65.00206 * 3 2 1 6 6 C 1.50700 * 109.47160 * 185.00077 * 3 2 1 7 7 O 1.21284 * 120.00394 * 315.31851 * 6 3 2 8 8 N 1.34781 * 119.99960 * 135.32503 * 6 3 2 9 9 C 1.47508 * 118.75605 * 174.56894 * 8 6 3 10 10 C 1.53573 * 111.02370 * 221.64699 * 9 8 6 11 11 C 1.51535 * 109.58476 * 39.97337 * 10 9 8 12 12 O 1.42146 * 108.75896 * 268.60281 * 11 10 9 13 13 C 1.38014 * 119.44389 * 87.22675 * 12 11 10 14 14 H 1.09004 * 109.46488 * 56.56768 * 13 12 11 15 15 C 1.52994 * 109.47479 * 176.56669 * 13 12 11 16 16 N 1.46494 * 109.47289 * 300.00393 * 15 13 12 17 17 C 1.36935 * 120.00366 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99912 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00360 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99965 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46845 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47288 * 119.99671 * 21 19 17 24 24 H 1.48494 * 109.47606 * 240.00087 * 21 19 17 25 25 C 1.45118 * 118.75594 * 354.57891 * 8 6 3 26 26 H 1.09004 * 109.46775 * 59.99900 * 1 2 3 27 27 H 1.09002 * 109.46742 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46964 * 299.99834 * 1 2 3 29 29 H 1.09003 * 109.47280 * 240.00630 * 2 1 3 30 30 H 1.08997 * 109.47405 * 120.00214 * 2 1 3 31 31 H 1.09006 * 109.16819 * 342.03665 * 9 8 6 32 32 H 1.08991 * 109.17070 * 101.24448 * 9 8 6 33 33 H 1.09009 * 109.45310 * 279.93933 * 10 9 8 34 34 H 1.09004 * 109.45365 * 160.01218 * 10 9 8 35 35 H 1.09008 * 109.59034 * 148.81797 * 11 10 9 36 36 H 1.08998 * 109.58736 * 28.38824 * 11 10 9 37 37 H 1.09004 * 109.47180 * 60.00523 * 15 13 12 38 38 H 1.09000 * 109.47044 * 179.97438 * 15 13 12 39 39 H 0.97000 * 120.00392 * 359.97438 * 16 15 13 40 40 H 0.97005 * 119.99751 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.46537 * 330.67931 * 25 8 6 42 42 H 1.08997 * 109.44863 * 210.71152 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1239 7 8 4.2061 0.6771 0.5403 8 7 4.1471 2.2986 -0.9727 9 6 5.6207 2.3625 -0.9845 10 6 6.1083 3.8152 -1.0867 11 6 5.2368 4.7055 -0.2241 12 8 4.1668 5.2036 -1.0163 13 6 3.0086 4.4625 -1.1352 14 1 2.6005 4.2648 -0.1440 15 6 1.9853 5.2444 -1.9613 16 7 1.6865 6.5139 -1.2942 17 6 0.7907 7.3864 -1.8521 18 1 0.3048 7.1389 -2.7844 19 6 0.5072 8.5891 -1.2197 20 7 1.0989 8.8906 -0.0833 21 14 -0.7143 9.7797 -1.9813 22 1 -1.2367 9.2093 -3.2490 23 1 -1.8400 10.0042 -1.0392 24 1 -0.0377 11.0717 -2.2609 25 6 3.3242 3.1209 -1.8402 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 6.0055 1.9198 -0.0657 32 1 5.9966 1.7979 -1.8376 33 1 6.0503 4.1455 -2.1239 34 1 7.1413 3.8764 -0.7439 35 1 5.8284 5.5383 0.1562 36 1 4.8365 4.1282 0.6093 37 1 2.3934 5.4421 -2.9526 38 1 1.0708 4.6589 -2.0556 39 1 2.1225 6.7361 -0.4567 40 1 0.9004 9.7309 0.3588 41 1 2.3932 2.5984 -2.0600 42 1 3.8592 3.3161 -2.7696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201139822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:41 Heat of formation + Delta-G solvation = -111.358332 kcal Electronic energy + Delta-G solvation = -24526.308785 eV Core-core repulsion = 20842.584881 eV Total energy + Delta-G solvation = -3683.723904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.92513 -40.63213 -38.64965 -35.53947 -34.90569 -34.20409 -33.07912 -31.05289 -28.90095 -28.20395 -26.46146 -25.07069 -23.02925 -22.33266 -21.29844 -21.02237 -19.38897 -18.11285 -17.24667 -17.07650 -16.59221 -16.25088 -15.86865 -15.34219 -15.12256 -14.64320 -14.39215 -14.03887 -13.85593 -13.60554 -13.29813 -13.11273 -12.98493 -12.78685 -12.45852 -12.34441 -12.18795 -12.07534 -11.90488 -11.33733 -11.29878 -11.00009 -10.94380 -10.81880 -10.74877 -10.37131 -10.02607 -9.81051 -9.72062 -9.46890 -8.87391 -8.71389 -6.89073 -5.72428 -3.01428 2.16689 2.60907 3.45555 3.50430 3.53240 3.86016 3.97609 4.27119 4.41742 4.56683 4.66832 4.68350 4.77494 4.88763 5.02140 5.10062 5.12923 5.25505 5.30469 5.38102 5.45183 5.54423 5.60319 5.61182 5.67326 5.74005 5.82611 5.87545 5.96829 6.02009 6.05930 6.24722 6.26232 6.50066 6.68038 7.00050 7.71373 7.77032 7.91878 8.45393 9.57317 10.14734 10.50262 11.50301 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.004809 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.206273 B = 5820.786354 C = 6965.027669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.073 3.927 4 H 0.107 0.893 5 F -0.184 7.184 6 C 0.491 3.509 7 O -0.525 6.525 8 N -0.601 5.601 9 C 0.110 3.890 10 C -0.166 4.166 11 C 0.072 3.928 12 O -0.363 6.363 13 C 0.082 3.918 14 H 0.054 0.946 15 C 0.165 3.835 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.063 3.937 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.028 0.972 38 H 0.032 0.968 39 H 0.388 0.612 40 H 0.254 0.746 41 H 0.091 0.909 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -17.601 -2.923 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.034 3.966 4 H 0.125 0.875 5 F -0.164 7.164 6 C 0.277 3.723 7 O -0.401 6.401 8 N -0.333 5.333 9 C -0.011 4.011 10 C -0.204 4.204 11 C -0.005 4.005 12 O -0.281 6.281 13 C 0.022 3.978 14 H 0.072 0.928 15 C 0.037 3.963 16 N -0.369 5.369 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.061 4.061 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.532 -17.753 -2.760 19.117 hybrid contribution -0.467 0.610 0.037 0.769 sum 6.065 -17.143 -2.723 18.387 Atomic orbital electron populations 1.21783 0.93895 1.02518 1.03002 1.21987 0.97549 0.93498 1.04687 1.21849 0.91839 0.96441 0.86508 0.87499 1.92914 1.91893 1.83846 1.47792 1.21138 0.90724 0.80687 0.79751 1.90691 1.66223 1.38825 1.44332 1.47992 1.07205 1.39329 1.38824 1.21876 0.78348 0.97461 1.03436 1.22509 1.00622 0.94275 1.02970 1.22162 0.88118 0.97616 0.92603 1.86453 1.23901 1.48054 1.69674 1.22424 0.86541 0.89971 0.98908 0.92845 1.20623 0.92520 0.88573 0.94602 1.42203 1.51339 1.16260 1.27094 1.19251 1.16016 0.97468 1.04397 0.91118 1.24742 1.00541 0.98204 0.97388 1.69690 1.46087 1.24373 1.17692 0.86126 0.80662 0.81246 0.78187 1.20562 1.21901 1.21888 1.22822 0.95777 0.92822 0.94656 0.92061 0.91788 0.91671 0.90033 0.89615 0.89200 0.91428 0.89941 0.89544 0.89006 0.93359 0.95389 0.95009 0.77752 0.93581 0.89138 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.83 37.16 0.37 -0.99 16 2 C -0.14 -1.40 5.41 -26.73 -0.14 -1.54 16 3 C 0.07 0.89 3.30 -27.88 -0.09 0.80 16 4 H 0.11 1.13 5.34 -51.93 -0.28 0.85 16 5 F -0.18 -2.81 16.75 2.25 0.04 -2.77 16 6 C 0.49 6.74 6.96 -10.98 -0.08 6.67 16 7 O -0.53 -8.56 15.94 5.55 0.09 -8.47 16 8 N -0.60 -7.37 2.19 -172.47 -0.38 -7.75 16 9 C 0.11 1.20 6.12 -3.19 -0.02 1.18 16 10 C -0.17 -1.74 5.78 -27.17 -0.16 -1.90 16 11 C 0.07 0.99 6.37 36.42 0.23 1.22 16 12 O -0.36 -6.29 9.18 -26.53 -0.24 -6.53 16 13 C 0.08 1.33 2.73 -25.78 -0.07 1.26 16 14 H 0.05 0.95 8.06 -51.93 -0.42 0.54 16 15 C 0.17 3.20 5.95 -4.05 -0.02 3.18 16 16 N -0.72 -18.53 5.49 -59.91 -0.33 -18.86 16 17 C -0.24 -6.72 9.99 -15.06 -0.15 -6.88 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.06 0.75 4.51 -3.83 -0.02 0.73 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.64 7.93 -51.93 -0.41 0.22 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.09 1.05 7.06 -51.93 -0.37 0.69 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.89 8.01 -51.92 -0.42 0.47 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.05 0.71 7.40 -51.93 -0.38 0.32 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.39 10.74 7.53 -40.82 -0.31 10.44 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.09 0.89 5.76 -51.93 -0.30 0.59 16 42 H 0.10 1.04 8.11 -51.93 -0.42 0.61 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -33.62 340.48 -6.89 -40.51 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.65 Total: 5.90 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.25 Total: 3.26 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.02 Total: -54.43 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.16 Total: -15.00 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.62 -6.89 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201139822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.850 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds