Wall clock time and date at job start Tue Mar 31 2020 03:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47228 * 2 1 4 4 H 1.09001 * 109.47501 * 305.00314 * 3 2 1 5 5 F 1.39900 * 109.47100 * 65.00206 * 3 2 1 6 6 C 1.50700 * 109.47160 * 185.00077 * 3 2 1 7 7 O 1.21284 * 120.00394 * 315.31851 * 6 3 2 8 8 N 1.34781 * 119.99960 * 135.32503 * 6 3 2 9 9 C 1.47508 * 118.75605 * 174.56894 * 8 6 3 10 10 C 1.53573 * 111.02370 * 221.64699 * 9 8 6 11 11 C 1.51535 * 109.58476 * 39.97337 * 10 9 8 12 12 O 1.42146 * 108.75896 * 268.60281 * 11 10 9 13 13 C 1.38014 * 119.44389 * 87.22675 * 12 11 10 14 14 H 1.09004 * 109.46488 * 56.56768 * 13 12 11 15 15 C 1.52994 * 109.47479 * 176.56669 * 13 12 11 16 16 N 1.46494 * 109.47289 * 300.00393 * 15 13 12 17 17 C 1.36935 * 120.00366 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99912 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00360 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99965 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46845 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47288 * 119.99671 * 21 19 17 24 24 H 1.48494 * 109.47606 * 240.00087 * 21 19 17 25 25 C 1.45118 * 118.75594 * 354.57891 * 8 6 3 26 26 H 1.09004 * 109.46775 * 59.99900 * 1 2 3 27 27 H 1.09002 * 109.46742 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46964 * 299.99834 * 1 2 3 29 29 H 1.09003 * 109.47280 * 240.00630 * 2 1 3 30 30 H 1.08997 * 109.47405 * 120.00214 * 2 1 3 31 31 H 1.09006 * 109.16819 * 342.03665 * 9 8 6 32 32 H 1.08991 * 109.17070 * 101.24448 * 9 8 6 33 33 H 1.09009 * 109.45310 * 279.93933 * 10 9 8 34 34 H 1.09004 * 109.45365 * 160.01218 * 10 9 8 35 35 H 1.09008 * 109.59034 * 148.81797 * 11 10 9 36 36 H 1.08998 * 109.58736 * 28.38824 * 11 10 9 37 37 H 1.09004 * 109.47180 * 60.00523 * 15 13 12 38 38 H 1.09000 * 109.47044 * 179.97438 * 15 13 12 39 39 H 0.97000 * 120.00392 * 359.97438 * 16 15 13 40 40 H 0.97005 * 119.99751 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.46537 * 330.67931 * 25 8 6 42 42 H 1.08997 * 109.44863 * 210.71152 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1239 7 8 4.2061 0.6771 0.5403 8 7 4.1471 2.2986 -0.9727 9 6 5.6207 2.3625 -0.9845 10 6 6.1083 3.8152 -1.0867 11 6 5.2368 4.7055 -0.2241 12 8 4.1668 5.2036 -1.0163 13 6 3.0086 4.4625 -1.1352 14 1 2.6005 4.2648 -0.1440 15 6 1.9853 5.2444 -1.9613 16 7 1.6865 6.5139 -1.2942 17 6 0.7907 7.3864 -1.8521 18 1 0.3048 7.1389 -2.7844 19 6 0.5072 8.5891 -1.2197 20 7 1.0989 8.8906 -0.0833 21 14 -0.7143 9.7797 -1.9813 22 1 -1.2367 9.2093 -3.2490 23 1 -1.8400 10.0042 -1.0392 24 1 -0.0377 11.0717 -2.2609 25 6 3.3242 3.1209 -1.8402 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 6.0055 1.9198 -0.0657 32 1 5.9966 1.7979 -1.8376 33 1 6.0503 4.1455 -2.1239 34 1 7.1413 3.8764 -0.7439 35 1 5.8284 5.5383 0.1562 36 1 4.8365 4.1282 0.6093 37 1 2.3934 5.4421 -2.9526 38 1 1.0708 4.6589 -2.0556 39 1 2.1225 6.7361 -0.4567 40 1 0.9004 9.7309 0.3588 41 1 2.3932 2.5984 -2.0600 42 1 3.8592 3.3161 -2.7696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201139822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:40 Heat of formation + Delta-G solvation = -133.745335 kcal Electronic energy + Delta-G solvation = -24527.279558 eV Core-core repulsion = 20842.584881 eV Total energy + Delta-G solvation = -3684.694678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.02701 -41.71523 -39.84795 -36.79460 -36.38654 -35.19489 -34.38566 -32.79892 -30.33017 -29.12698 -27.65466 -26.50448 -24.61410 -23.42112 -22.48411 -22.13719 -20.41926 -19.25021 -19.07897 -18.22935 -17.78266 -17.27063 -16.98262 -16.73767 -16.36496 -16.06051 -15.72067 -15.12946 -15.01062 -14.82708 -14.77777 -14.60699 -13.96284 -13.92649 -13.74457 -13.47253 -13.30098 -13.12603 -12.89813 -12.80003 -12.73877 -12.35988 -12.09293 -12.05825 -11.94408 -11.82930 -11.73266 -11.54605 -10.95451 -10.89341 -10.60251 -9.80147 -8.95840 -7.90285 -5.19250 1.09536 1.50249 1.51541 1.61441 1.65142 2.59084 2.67657 2.98329 3.40938 3.44397 3.50096 3.57537 3.76925 3.82959 3.94807 4.02409 4.05159 4.24631 4.31740 4.35332 4.39733 4.44797 4.49854 4.64147 4.70206 4.71377 4.79973 4.89245 4.99017 5.03391 5.09898 5.11418 5.18785 5.31443 5.33317 5.53098 5.98566 6.30509 6.68928 6.74861 7.37184 8.13486 8.35708 9.34018 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.004809 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.206273 B = 5820.786354 C = 6965.027669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C 0.065 3.935 4 H 0.127 0.873 5 F -0.205 7.205 6 C 0.488 3.512 7 O -0.556 6.556 8 N -0.597 5.597 9 C 0.107 3.893 10 C -0.152 4.152 11 C 0.068 3.932 12 O -0.392 6.392 13 C 0.089 3.911 14 H 0.029 0.971 15 C 0.160 3.840 16 N -0.742 5.742 17 C -0.240 4.240 18 H 0.083 0.917 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.975 3.025 22 H -0.261 1.261 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.073 3.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.036 0.964 38 H 0.053 0.947 39 H 0.372 0.628 40 H 0.249 0.751 41 H 0.117 0.883 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -18.866 -5.233 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.026 3.974 4 H 0.144 0.856 5 F -0.186 7.186 6 C 0.275 3.725 7 O -0.434 6.434 8 N -0.328 5.328 9 C -0.014 4.014 10 C -0.190 4.190 11 C -0.009 4.009 12 O -0.311 6.311 13 C 0.029 3.971 14 H 0.047 0.953 15 C 0.033 3.967 16 N -0.384 5.384 17 C -0.372 4.372 18 H 0.101 0.899 19 C -0.271 4.271 20 N -0.624 5.624 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.223 1.223 24 H -0.224 1.224 25 C -0.050 4.050 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.204 0.796 40 H 0.058 0.942 41 H 0.135 0.865 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.454 -19.058 -5.121 20.762 hybrid contribution -0.378 0.966 0.757 1.285 sum 6.076 -18.091 -4.364 19.577 Atomic orbital electron populations 1.21790 0.92844 1.03600 1.02770 1.21992 0.98366 0.91928 1.04941 1.22157 0.91156 0.97981 0.86094 0.85595 1.92868 1.92022 1.84427 1.49321 1.21410 0.91265 0.80451 0.79400 1.90675 1.66977 1.40254 1.45492 1.48065 1.07947 1.38440 1.38358 1.22026 0.77488 0.97832 1.04024 1.22412 1.01123 0.93048 1.02428 1.22317 0.87705 0.98230 0.92602 1.86382 1.24696 1.49702 1.70316 1.22227 0.85719 0.91472 0.97671 0.95296 1.20859 0.94329 0.86689 0.94785 1.42451 1.50936 1.18184 1.26877 1.19734 1.15454 0.97645 1.04327 0.89890 1.25605 1.03023 1.00367 0.98151 1.69863 1.48291 1.24747 1.19522 0.85051 0.78060 0.78614 0.77901 1.18476 1.22290 1.22354 1.22748 0.97399 0.90538 0.94365 0.90935 0.90090 0.93233 0.88035 0.91100 0.90291 0.88891 0.89438 0.86975 0.88782 0.94927 0.94586 0.92964 0.79622 0.94216 0.86506 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.83 71.98 0.71 -1.71 16 2 C -0.13 -2.51 5.41 30.59 0.17 -2.34 16 3 C 0.06 1.52 3.30 29.85 0.10 1.62 16 4 H 0.13 2.38 5.34 -2.39 -0.01 2.37 16 5 F -0.21 -6.37 16.75 44.97 0.75 -5.62 16 6 C 0.49 12.88 6.96 87.66 0.61 13.49 16 7 O -0.56 -17.91 15.94 -3.04 -0.05 -17.96 16 8 N -0.60 -13.48 2.19 -817.96 -1.79 -15.28 16 9 C 0.11 2.09 6.12 86.38 0.53 2.62 16 10 C -0.15 -2.86 5.78 30.31 0.18 -2.69 16 11 C 0.07 1.84 6.37 71.50 0.46 2.29 16 12 O -0.39 -13.45 9.18 -117.85 -1.08 -14.53 16 13 C 0.09 2.82 2.73 31.21 0.09 2.90 16 14 H 0.03 1.05 8.06 -2.38 -0.02 1.03 16 15 C 0.16 5.98 5.95 86.38 0.51 6.50 16 16 N -0.74 -38.04 5.49 -343.47 -1.88 -39.93 16 17 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 20 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 21 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 C 0.07 1.54 4.51 87.26 0.39 1.94 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.93 7.93 -2.39 -0.02 0.91 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 31 H 0.08 1.75 7.06 -2.38 -0.02 1.73 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.62 8.01 -2.38 -0.02 1.60 16 34 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.03 0.97 7.40 -2.39 -0.02 0.95 16 37 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.37 21.16 7.53 -92.71 -0.70 20.46 16 40 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 41 H 0.12 1.86 5.76 -2.39 -0.01 1.85 16 42 H 0.12 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -74.00 340.48 3.61 -70.38 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.32 Total: 27.51 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.04 Total: 8.00 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -3.39 Total: -116.00 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.13 Total: -32.49 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.75 Total: -5.62 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -74.00 3.61 -70.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201139822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.361 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds