Wall clock time and date at job start Tue Mar 31 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00403 * 2 1 4 4 H 1.08998 * 110.88442 * 32.42780 * 3 2 1 5 5 C 1.54917 * 111.00398 * 268.54749 * 3 2 1 6 6 N 1.47422 * 104.83074 * 204.87574 * 5 3 2 7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 3 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5 10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47583 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.46831 * 119.99792 * 11 9 7 14 14 H 1.48497 * 109.47398 * 239.99526 * 11 9 7 15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 3 16 16 C 1.54316 * 107.27568 * 358.94070 * 15 6 5 17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 6 18 18 N 1.46500 * 110.72232 * 219.44595 * 16 15 6 19 19 C 1.34778 * 119.99379 * 268.51936 * 18 16 15 20 20 O 1.21279 * 120.00463 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99750 * 179.97438 * 19 18 16 22 22 H 1.08999 * 109.46966 * 325.00449 * 21 19 18 23 23 C 1.52995 * 109.46931 * 84.99727 * 21 19 18 24 24 S 1.81394 * 109.47382 * 205.00275 * 21 19 18 25 25 C 1.81395 * 103.00103 * 175.00334 * 24 21 19 26 26 H 1.08999 * 109.47310 * 59.99456 * 1 2 3 27 27 H 1.08995 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46919 * 300.00196 * 1 2 3 29 29 H 1.08998 * 110.36726 * 323.71587 * 5 3 2 30 30 H 1.09005 * 110.36534 * 86.04108 * 5 3 2 31 31 H 0.96998 * 119.99446 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.88493 * 239.51822 * 15 6 5 33 33 H 1.09005 * 110.00581 * 118.43132 * 15 6 5 34 34 H 0.97001 * 120.00302 * 88.51904 * 18 16 15 35 35 H 1.09002 * 109.48087 * 300.00347 * 23 21 19 36 36 H 1.09002 * 109.47030 * 60.00159 * 23 21 19 37 37 H 1.09003 * 109.47262 * 180.02562 * 23 21 19 38 38 H 1.09004 * 109.46653 * 299.99542 * 25 24 21 39 39 H 1.08997 * 109.47620 * 59.99378 * 25 24 21 40 40 H 1.08996 * 109.47125 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2697 1.7977 -1.4458 6 7 3.3606 2.7813 -1.3195 7 6 3.6227 3.7994 -2.1969 8 1 4.4496 4.4698 -2.0147 9 6 2.8254 3.9700 -3.3204 10 7 1.8179 3.1527 -3.5426 11 14 3.1826 5.3593 -4.5168 12 1 4.3598 6.1305 -4.0429 13 1 3.4684 4.7945 -5.8602 14 1 2.0031 6.2578 -4.5984 15 6 4.1210 2.4873 -0.0960 16 6 3.4486 1.2747 0.5813 17 1 3.9556 0.3495 0.3072 18 7 3.4231 1.4420 2.0365 19 6 4.4338 0.9618 2.7877 20 8 5.3641 0.3908 2.2591 21 6 4.4079 1.1343 4.2847 22 1 3.9486 2.0913 4.5322 23 6 3.5959 0.0010 4.9146 24 16 6.1036 1.0932 4.9275 25 6 5.8813 1.4645 6.6891 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.5795 0.9669 -2.0796 30 1 1.3760 2.2725 -1.8509 31 1 1.2611 3.2717 -4.3279 32 1 4.0942 3.3475 0.5728 33 1 5.1537 2.2458 -0.3478 34 1 2.6788 1.8983 2.4593 35 1 2.5769 0.0256 4.5284 36 1 4.0551 -0.9561 4.6671 37 1 3.5768 0.1260 5.9973 38 1 5.4157 2.4440 6.7979 39 1 5.2428 0.7063 7.1425 40 1 6.8518 1.4668 7.1852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211909178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:24 Heat of formation + Delta-G solvation = -47.633719 kcal Electronic energy + Delta-G solvation = -21460.535441 eV Core-core repulsion = 18209.954924 eV Total energy + Delta-G solvation = -3250.580516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83295 -38.14844 -35.94054 -34.15469 -33.36256 -31.64193 -29.09422 -28.76496 -27.17317 -26.13685 -25.01246 -23.89807 -20.87539 -20.56670 -19.90244 -17.66035 -16.95964 -16.76059 -16.15485 -15.47599 -15.09291 -14.88664 -14.41057 -14.39696 -14.27669 -13.99614 -13.76462 -13.32144 -13.09544 -12.97577 -12.56077 -12.26220 -12.17191 -11.98577 -11.78348 -11.44776 -11.31584 -11.03775 -10.85510 -10.81805 -10.18413 -10.01384 -9.92052 -9.83530 -9.76418 -9.11937 -8.73256 -8.71271 -7.80303 -6.92079 -5.71685 -3.14651 1.30403 2.33747 2.73673 3.23089 3.37617 3.43628 3.46085 4.09265 4.45805 4.55928 4.62244 4.80191 4.87616 4.91772 5.16617 5.25862 5.35310 5.40672 5.48669 5.49050 5.59076 5.65780 5.66665 5.79955 5.82259 5.94343 6.04819 6.17566 6.42759 6.66655 6.85351 7.22738 7.52442 7.59566 7.70520 7.76589 8.23621 8.30764 9.14110 9.74388 10.36637 11.32274 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.004112 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.711719 B = 6807.302952 C = 7867.252603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.222 4.222 8 H 0.081 0.919 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.130 3.870 16 C 0.138 3.862 17 H 0.105 0.895 18 N -0.709 5.709 19 C 0.533 3.467 20 O -0.518 6.518 21 C -0.093 4.093 22 H 0.105 0.895 23 C -0.141 4.141 24 S -0.187 6.187 25 C -0.140 4.140 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.033 0.967 29 H 0.027 0.973 30 H 0.113 0.887 31 H 0.253 0.747 32 H 0.030 0.970 33 H 0.035 0.965 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -4.124 18.826 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.099 0.901 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.123 0.877 18 N -0.360 5.360 19 C 0.317 3.683 20 O -0.392 6.392 21 C -0.225 4.225 22 H 0.124 0.876 23 C -0.200 4.200 24 S 0.038 5.962 25 C -0.309 4.309 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.231 0.769 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.084 -4.819 17.705 18.350 hybrid contribution -1.593 1.434 0.298 2.164 sum -1.509 -3.385 18.003 18.381 Atomic orbital electron populations 1.22694 0.81556 1.01905 1.00023 1.87845 1.19264 1.27688 1.95139 1.24030 0.92114 0.83777 1.00565 0.91621 1.22335 0.95368 0.91914 0.88996 1.44310 1.31845 1.33137 1.23523 1.19157 1.11155 1.04104 1.00598 0.90099 1.24805 0.98033 0.99348 0.98395 1.69761 1.20040 1.38622 1.28748 0.85954 0.77408 0.81045 0.80834 1.20432 1.21638 1.21725 1.21604 0.95271 0.93584 0.89236 1.22162 0.96556 1.00547 0.77418 0.87738 1.45900 1.23565 1.58930 1.07640 1.19560 0.82728 0.78944 0.87095 1.90754 1.33817 1.41330 1.73348 1.23340 0.98506 1.03959 0.96681 0.87645 1.21977 0.99835 0.97676 1.00485 1.87512 1.08846 1.93631 1.06181 1.23542 1.06445 1.04419 0.96511 0.93384 0.90324 0.94855 0.95521 0.86983 0.93656 0.95191 0.94748 0.76862 0.91064 0.90500 0.91488 0.90597 0.90468 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.89 101.05 1.10 1.59 16 2 O -0.38 -6.88 10.52 -35.23 -0.37 -7.26 16 3 C 0.05 1.03 3.12 -24.58 -0.08 0.96 16 4 H 0.07 1.14 7.77 -51.93 -0.40 0.74 16 5 C 0.14 3.37 5.62 -2.53 -0.01 3.36 16 6 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 7 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 10 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 11 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.13 2.84 6.99 -3.07 -0.02 2.82 16 16 C 0.14 2.60 3.05 -66.10 -0.20 2.40 16 17 H 0.10 2.19 7.55 -51.93 -0.39 1.80 16 18 N -0.71 -10.52 5.10 -52.03 -0.27 -10.79 16 19 C 0.53 8.22 6.95 -10.98 -0.08 8.15 16 20 O -0.52 -10.24 15.79 5.56 0.09 -10.15 16 21 C -0.09 -1.04 3.17 -27.88 -0.09 -1.13 16 22 H 0.11 0.94 8.14 -51.92 -0.42 0.51 16 23 C -0.14 -1.25 9.08 37.15 0.34 -0.91 16 24 S -0.19 -2.30 21.10 -107.50 -2.27 -4.57 16 25 C -0.14 -1.04 10.45 101.05 1.06 0.02 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.11 2.97 5.88 -51.93 -0.31 2.67 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.65 8.56 -40.82 -0.35 4.30 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.45 6.92 -51.93 -0.36 0.09 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.47 7.14 -51.93 -0.37 0.10 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -32.79 341.33 -7.32 -40.11 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.37 Total: 1.95 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 1.76 Total: 10.54 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.28 Total: -52.62 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.28 Total: -17.41 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.27 Total: -4.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.79 -7.32 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211909178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.525 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds