Wall clock time and date at job start Tue Mar 31 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00403 * 2 1 4 4 H 1.08998 * 110.88442 * 32.42780 * 3 2 1 5 5 C 1.54917 * 111.00398 * 268.54749 * 3 2 1 6 6 N 1.47422 * 104.83074 * 204.87574 * 5 3 2 7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 3 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5 10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47583 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.46831 * 119.99792 * 11 9 7 14 14 H 1.48497 * 109.47398 * 239.99526 * 11 9 7 15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 3 16 16 C 1.54316 * 107.27568 * 358.94070 * 15 6 5 17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 6 18 18 N 1.46500 * 110.72232 * 219.44595 * 16 15 6 19 19 C 1.34778 * 119.99379 * 268.51936 * 18 16 15 20 20 O 1.21279 * 120.00463 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99750 * 179.97438 * 19 18 16 22 22 H 1.08999 * 109.46966 * 325.00449 * 21 19 18 23 23 C 1.52995 * 109.46931 * 84.99727 * 21 19 18 24 24 S 1.81394 * 109.47382 * 205.00275 * 21 19 18 25 25 C 1.81395 * 103.00103 * 175.00334 * 24 21 19 26 26 H 1.08999 * 109.47310 * 59.99456 * 1 2 3 27 27 H 1.08995 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46919 * 300.00196 * 1 2 3 29 29 H 1.08998 * 110.36726 * 323.71587 * 5 3 2 30 30 H 1.09005 * 110.36534 * 86.04108 * 5 3 2 31 31 H 0.96998 * 119.99446 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.88493 * 239.51822 * 15 6 5 33 33 H 1.09005 * 110.00581 * 118.43132 * 15 6 5 34 34 H 0.97001 * 120.00302 * 88.51904 * 18 16 15 35 35 H 1.09002 * 109.48087 * 300.00347 * 23 21 19 36 36 H 1.09002 * 109.47030 * 60.00159 * 23 21 19 37 37 H 1.09003 * 109.47262 * 180.02562 * 23 21 19 38 38 H 1.09004 * 109.46653 * 299.99542 * 25 24 21 39 39 H 1.08997 * 109.47620 * 59.99378 * 25 24 21 40 40 H 1.08996 * 109.47125 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2697 1.7977 -1.4458 6 7 3.3606 2.7813 -1.3195 7 6 3.6227 3.7994 -2.1969 8 1 4.4496 4.4698 -2.0147 9 6 2.8254 3.9700 -3.3204 10 7 1.8179 3.1527 -3.5426 11 14 3.1826 5.3593 -4.5168 12 1 4.3598 6.1305 -4.0429 13 1 3.4684 4.7945 -5.8602 14 1 2.0031 6.2578 -4.5984 15 6 4.1210 2.4873 -0.0960 16 6 3.4486 1.2747 0.5813 17 1 3.9556 0.3495 0.3072 18 7 3.4231 1.4420 2.0365 19 6 4.4338 0.9618 2.7877 20 8 5.3641 0.3908 2.2591 21 6 4.4079 1.1343 4.2847 22 1 3.9486 2.0913 4.5322 23 6 3.5959 0.0010 4.9146 24 16 6.1036 1.0932 4.9275 25 6 5.8813 1.4645 6.6891 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.5795 0.9669 -2.0796 30 1 1.3760 2.2725 -1.8509 31 1 1.2611 3.2717 -4.3279 32 1 4.0942 3.3475 0.5728 33 1 5.1537 2.2458 -0.3478 34 1 2.6788 1.8983 2.4593 35 1 2.5769 0.0256 4.5284 36 1 4.0551 -0.9561 4.6671 37 1 3.5768 0.1260 5.9973 38 1 5.4157 2.4440 6.7979 39 1 5.2428 0.7063 7.1425 40 1 6.8518 1.4668 7.1852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211909178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:24 Heat of formation + Delta-G solvation = -71.517960 kcal Electronic energy + Delta-G solvation = -21461.571139 eV Core-core repulsion = 18209.954924 eV Total energy + Delta-G solvation = -3251.616215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.20045 -39.66357 -37.53731 -35.69762 -34.47000 -33.40234 -30.57665 -29.63050 -28.84285 -27.55440 -26.38131 -25.28388 -22.49706 -22.09689 -21.43572 -19.24856 -18.42547 -18.14307 -17.39568 -17.16587 -16.38432 -16.26831 -15.83149 -15.71239 -15.39284 -15.20390 -15.01240 -14.63474 -14.34146 -14.05532 -13.84225 -13.75467 -13.29655 -13.20247 -13.04524 -12.88708 -12.76076 -12.71276 -12.53628 -12.35909 -12.01704 -11.92520 -11.56375 -11.07796 -10.81802 -10.78335 -10.59102 -10.17956 -8.98984 -8.71280 -7.82303 -5.29687 0.45657 1.47001 1.48174 1.49552 1.58926 1.67483 2.00737 2.44209 2.72555 3.28735 3.47772 3.58980 3.80616 3.84926 3.95654 3.99248 4.06036 4.33608 4.38759 4.40904 4.45150 4.60060 4.64204 4.66440 4.69780 4.81969 4.88851 4.89184 4.95065 5.14740 5.27188 5.38506 5.43646 5.66584 6.17292 6.29676 6.41088 7.03283 7.12252 7.67527 8.29807 9.19325 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.004112 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.711719 B = 6807.302952 C = 7867.252603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.079 3.921 4 H 0.092 0.908 5 C 0.144 3.856 6 N -0.618 5.618 7 C -0.244 4.244 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.947 5.947 11 Si 0.984 3.016 12 H -0.268 1.268 13 H -0.293 1.293 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.155 3.845 17 H 0.079 0.921 18 N -0.695 5.695 19 C 0.529 3.471 20 O -0.567 6.567 21 C -0.073 4.073 22 H 0.137 0.863 23 C -0.136 4.136 24 S -0.275 6.275 25 C -0.117 4.117 26 H 0.033 0.967 27 H 0.103 0.897 28 H 0.063 0.937 29 H -0.013 1.013 30 H 0.089 0.911 31 H 0.250 0.750 32 H 0.044 0.956 33 H 0.013 0.987 34 H 0.417 0.583 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 -3.271 21.552 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.019 3.981 4 H 0.110 0.890 5 C 0.018 3.982 6 N -0.346 5.346 7 C -0.373 4.373 8 H 0.100 0.900 9 C -0.253 4.253 10 N -0.596 5.596 11 Si 0.812 3.188 12 H -0.193 1.193 13 H -0.220 1.220 14 H -0.212 1.212 15 C 0.004 3.996 16 C 0.049 3.951 17 H 0.097 0.903 18 N -0.347 5.347 19 C 0.315 3.685 20 O -0.445 6.445 21 C -0.204 4.204 22 H 0.155 0.845 23 C -0.195 4.195 24 S -0.049 6.049 25 C -0.285 4.285 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.005 0.995 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.255 0.745 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.247 -3.959 20.485 20.901 hybrid contribution -1.174 1.122 -0.526 1.707 sum -2.422 -2.837 19.959 20.304 Atomic orbital electron populations 1.22973 0.79234 1.03897 1.00766 1.87840 1.21790 1.26791 1.95006 1.23603 0.92652 0.84848 0.96971 0.88998 1.22106 0.93827 0.90220 0.92028 1.44555 1.32814 1.32885 1.24358 1.19495 1.11397 1.04810 1.01565 0.90002 1.25645 0.97964 1.01737 0.99979 1.69993 1.20663 1.39965 1.28958 0.84932 0.77599 0.78212 0.78069 1.19272 1.22037 1.21153 1.21666 0.94122 0.95309 0.88468 1.21607 0.95828 0.97904 0.79796 0.90328 1.45646 1.24417 1.58970 1.05696 1.20375 0.81573 0.77519 0.89047 1.90739 1.35688 1.43373 1.74718 1.23263 0.97819 1.06521 0.92831 0.84487 1.21997 0.99731 0.95592 1.02201 1.87847 1.11372 1.94168 1.11564 1.23575 1.07597 1.05781 0.91576 0.94779 0.87839 0.91886 0.99497 0.89332 0.94006 0.93821 0.96868 0.74493 0.89548 0.92480 0.88540 0.88967 0.88624 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.89 113.37 1.23 1.94 16 2 O -0.40 -13.93 10.52 -148.98 -1.57 -15.50 16 3 C 0.08 2.95 3.12 31.99 0.10 3.05 16 4 H 0.09 2.98 7.77 -2.39 -0.02 2.96 16 5 C 0.14 7.20 5.62 86.86 0.49 7.69 16 6 N -0.62 -32.58 3.39 -691.99 -2.35 -34.93 16 7 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 10 N -0.95 -55.54 10.09 21.65 0.22 -55.32 16 11 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 C 0.13 5.82 6.99 86.73 0.61 6.43 16 16 C 0.16 5.86 3.05 46.18 0.14 6.00 16 17 H 0.08 3.42 7.55 -2.39 -0.02 3.40 16 18 N -0.69 -19.48 5.10 -436.92 -2.23 -21.71 16 19 C 0.53 15.80 6.95 87.66 0.61 16.41 16 20 O -0.57 -22.95 15.79 -3.03 -0.05 -23.00 16 21 C -0.07 -1.45 3.17 29.85 0.09 -1.35 16 22 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 23 C -0.14 -1.98 9.08 71.98 0.65 -1.32 16 24 S -0.27 -6.41 21.10 -56.49 -1.19 -7.60 16 25 C -0.12 -1.34 10.45 113.37 1.18 -0.15 16 26 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.09 4.86 5.88 -2.38 -0.01 4.84 16 31 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.04 1.82 8.03 -2.39 -0.02 1.80 16 33 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.42 8.38 8.56 -92.71 -0.79 7.58 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 0.86 6.92 -2.39 -0.02 0.84 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.77 7.14 -2.39 -0.02 0.75 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.47 341.33 1.54 -73.93 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.24 Total: 13.95 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.44 Total: 22.80 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.36 Total: -111.96 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.61 Total: -38.50 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -1.19 Total: -7.60 kcal Total: -75.47 1.54 -73.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211909178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.409 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds