Wall clock time and date at job start Tue Mar 31 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 S 1.81399 * 109.47104 * 179.97438 * 3 2 1 5 5 C 1.81404 * 103.00030 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47268 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99646 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00011 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99762 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.64198 * 36.68435 * 9 8 6 11 11 C 1.54320 * 110.71903 * 273.54291 * 9 8 6 12 12 N 1.47018 * 107.27210 * 263.83160 * 11 9 8 13 13 C 1.36945 * 125.64695 * 181.02594 * 12 11 9 14 14 H 1.07999 * 120.00077 * 359.97438 * 13 12 11 15 15 C 1.38812 * 119.99637 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00227 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47118 * 90.00067 * 17 15 13 19 19 H 1.48499 * 109.47293 * 210.00071 * 17 15 13 20 20 H 1.48504 * 109.47104 * 330.00316 * 17 15 13 21 21 C 1.47421 * 108.70379 * 1.28563 * 12 11 9 22 22 C 1.55129 * 104.72458 * 335.55582 * 21 12 11 23 23 H 1.09004 * 111.19138 * 279.18827 * 22 21 12 24 24 O 1.42895 * 110.94180 * 155.28502 * 22 21 12 25 25 H 1.09000 * 109.46963 * 300.00124 * 1 2 3 26 26 H 1.09004 * 109.46870 * 60.00123 * 1 2 3 27 27 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47702 * 239.99902 * 2 1 3 29 29 H 1.09004 * 109.46870 * 119.99876 * 2 1 3 30 30 H 1.09000 * 109.47274 * 60.00066 * 3 2 1 31 31 H 1.09004 * 109.47118 * 299.99725 * 3 2 1 32 32 H 1.09004 * 109.46829 * 60.00205 * 5 4 3 33 33 H 1.09003 * 109.47138 * 299.99930 * 5 4 3 34 34 H 0.96994 * 119.99689 * 359.97438 * 8 6 5 35 35 H 1.09010 * 109.88205 * 144.41448 * 11 9 8 36 36 H 1.08994 * 109.88352 * 23.25382 * 11 9 8 37 37 H 0.97005 * 120.00046 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.36244 * 94.48455 * 21 12 11 39 39 H 1.08997 * 110.36930 * 216.80538 * 21 12 11 40 40 H 0.96705 * 114.00230 * 67.95507 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 6 4.2621 3.2100 -0.0001 6 6 5.7595 3.3799 -0.0002 7 8 6.4804 2.4046 0.0007 8 7 6.2976 4.6156 -0.0003 9 6 7.7532 4.7806 0.0001 10 1 8.2274 4.0110 -0.6089 11 6 8.3053 4.7539 1.4410 12 7 8.4443 6.1497 1.8812 13 6 8.9224 6.5591 3.0974 14 1 9.2360 5.8284 3.8282 15 6 9.0041 7.9134 3.3908 16 7 8.6215 8.8040 2.5004 17 14 9.6557 8.4720 5.0500 18 1 11.1271 8.6547 4.9679 19 1 9.0171 9.7592 5.4247 20 1 9.3408 7.4459 6.0763 21 6 7.9778 7.0354 0.7990 22 6 8.1451 6.1976 -0.4959 23 1 9.1768 6.2171 -0.8473 24 8 7.2512 6.6489 -1.5153 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.8428 3.6801 0.8895 33 1 3.8436 3.6791 -0.8906 34 1 5.7210 5.3955 -0.0007 35 1 9.2778 4.2617 1.4563 36 1 7.6104 4.2265 2.0944 37 1 8.6782 9.7504 2.7056 38 1 6.9312 7.2998 0.9499 39 1 8.5938 7.9333 0.7515 40 1 7.4563 7.5302 -1.8564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219268035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:54 Heat of formation + Delta-G solvation = -63.851529 kcal Electronic energy + Delta-G solvation = -20795.395953 eV Core-core repulsion = 17544.112180 eV Total energy + Delta-G solvation = -3251.283773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65422 -37.77046 -35.12389 -34.93214 -33.79681 -31.85713 -30.11343 -28.21587 -27.52222 -26.92556 -24.44717 -22.05713 -20.88896 -20.47543 -19.76937 -17.37439 -17.04396 -16.67780 -16.29029 -15.80837 -15.49688 -15.18634 -14.94546 -14.10606 -13.88792 -13.85027 -13.60914 -13.30922 -12.98158 -12.81411 -12.66443 -12.37153 -12.14388 -11.74239 -11.43063 -11.36080 -11.15993 -11.11696 -10.98164 -10.89625 -10.24643 -10.09888 -9.98530 -9.90587 -9.65660 -9.24963 -8.80647 -8.64607 -7.68551 -6.95766 -5.76247 -3.18190 1.38653 2.47321 2.81639 3.34921 3.40383 3.42084 3.44555 4.35260 4.52979 4.54822 4.59881 4.91503 4.95912 4.97814 5.12510 5.18415 5.26403 5.33253 5.35425 5.40342 5.50062 5.66153 5.68475 5.77846 5.82113 5.92383 6.10362 6.19711 6.44421 6.62314 6.94114 7.22267 7.49948 7.66860 7.79072 8.00673 8.21551 8.45419 9.10643 9.71035 10.33513 11.27952 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.003299 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.913048 B = 8486.097220 C = 9072.501557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.108 4.108 4 S -0.186 6.186 5 C -0.125 4.125 6 C 0.529 3.471 7 O -0.529 6.529 8 N -0.694 5.694 9 C 0.146 3.854 10 H 0.091 0.909 11 C 0.126 3.874 12 N -0.600 5.600 13 C -0.221 4.221 14 H 0.080 0.920 15 C -0.012 4.012 16 N -0.925 5.925 17 Si 0.917 3.083 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.128 3.872 22 C 0.063 3.937 23 H 0.072 0.928 24 O -0.567 6.567 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.406 0.594 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.253 0.747 38 H 0.020 0.980 39 H 0.112 0.888 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.728 -9.136 -8.108 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.257 4.257 4 S 0.040 5.960 5 C -0.276 4.276 6 C 0.313 3.687 7 O -0.406 6.406 8 N -0.345 5.345 9 C 0.040 3.960 10 H 0.109 0.891 11 C -0.001 4.001 12 N -0.328 5.328 13 C -0.349 4.349 14 H 0.098 0.902 15 C -0.207 4.207 16 N -0.574 5.574 17 Si 0.748 3.252 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.002 3.998 22 C 0.003 3.997 23 H 0.090 0.910 24 O -0.371 6.371 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.241 0.759 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.129 0.871 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.724 -11.073 -7.875 17.947 hybrid contribution -0.601 2.490 0.837 2.694 sum -12.325 -8.584 -7.037 16.586 Atomic orbital electron populations 1.21766 0.94796 1.02046 1.02019 1.21220 0.95882 0.94005 1.03461 1.23571 0.95683 1.01578 1.04830 1.87475 1.03952 1.06479 1.98059 1.23487 0.98246 0.98896 1.07016 1.19537 0.88555 0.83749 0.76886 1.90724 1.61903 1.38486 1.49502 1.45572 1.07854 1.07358 1.73708 1.22021 0.79954 0.96663 0.97342 0.89058 1.21759 0.97929 0.88693 0.91726 1.44347 1.74937 0.99124 1.14389 1.19118 1.34375 0.91285 0.90120 0.90227 1.24788 1.01587 0.95605 0.98704 1.69735 1.53618 1.00506 1.33559 0.86023 0.78452 0.77925 0.82824 1.21486 1.21630 1.20663 1.22608 0.98986 0.95053 0.83129 1.23758 0.92231 0.94055 0.89657 0.90994 1.86325 1.56440 1.38045 1.56314 0.92517 0.92572 0.92181 0.90983 0.90927 0.90159 0.90226 0.87297 0.87389 0.75927 0.94479 0.94936 0.93657 0.96187 0.87088 0.77405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.11 -0.86 5.94 -26.73 -0.16 -1.02 16 3 C -0.11 -0.98 5.94 37.16 0.22 -0.76 16 4 S -0.19 -2.46 20.87 -107.50 -2.24 -4.70 16 5 C -0.13 -1.57 6.42 36.01 0.23 -1.34 16 6 C 0.53 8.81 7.85 -10.98 -0.09 8.72 16 7 O -0.53 -10.68 15.59 5.56 0.09 -10.59 16 8 N -0.69 -11.58 4.78 -52.03 -0.25 -11.83 16 9 C 0.15 2.70 3.14 -66.10 -0.21 2.49 16 10 H 0.09 1.69 7.69 -51.93 -0.40 1.29 16 11 C 0.13 2.71 6.98 -3.07 -0.02 2.69 16 12 N -0.60 -14.94 3.39 -169.94 -0.58 -15.52 16 13 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 14 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 15 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 16 N -0.93 -25.87 10.08 55.49 0.56 -25.31 16 17 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.13 2.88 5.62 -2.41 -0.01 2.87 16 22 C 0.06 1.14 4.23 -24.46 -0.10 1.04 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 O -0.57 -8.74 12.63 -35.23 -0.45 -9.18 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.41 6.31 8.20 -40.82 -0.33 5.97 16 35 H 0.04 0.80 8.14 -51.92 -0.42 0.37 16 36 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 37 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.11 2.81 5.85 -51.93 -0.30 2.50 16 40 H 0.38 4.43 9.12 45.56 0.42 4.85 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -31.88 342.77 -8.41 -40.29 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.66 Total: 7.48 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.02 Total: 7.55 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.27 Total: -52.65 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.36 Total: -19.77 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.24 Total: -4.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.88 -8.41 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219268035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.563 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds