Wall clock time and date at job start Tue Mar 31 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 S 1.81399 * 109.47104 * 179.97438 * 3 2 1 5 5 C 1.81404 * 103.00030 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47268 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99646 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00011 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99762 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.64198 * 36.68435 * 9 8 6 11 11 C 1.54320 * 110.71903 * 273.54291 * 9 8 6 12 12 N 1.47018 * 107.27210 * 263.83160 * 11 9 8 13 13 C 1.36945 * 125.64695 * 181.02594 * 12 11 9 14 14 H 1.07999 * 120.00077 * 359.97438 * 13 12 11 15 15 C 1.38812 * 119.99637 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00227 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47118 * 90.00067 * 17 15 13 19 19 H 1.48499 * 109.47293 * 210.00071 * 17 15 13 20 20 H 1.48504 * 109.47104 * 330.00316 * 17 15 13 21 21 C 1.47421 * 108.70379 * 1.28563 * 12 11 9 22 22 C 1.55129 * 104.72458 * 335.55582 * 21 12 11 23 23 H 1.09004 * 111.19138 * 279.18827 * 22 21 12 24 24 O 1.42895 * 110.94180 * 155.28502 * 22 21 12 25 25 H 1.09000 * 109.46963 * 300.00124 * 1 2 3 26 26 H 1.09004 * 109.46870 * 60.00123 * 1 2 3 27 27 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47702 * 239.99902 * 2 1 3 29 29 H 1.09004 * 109.46870 * 119.99876 * 2 1 3 30 30 H 1.09000 * 109.47274 * 60.00066 * 3 2 1 31 31 H 1.09004 * 109.47118 * 299.99725 * 3 2 1 32 32 H 1.09004 * 109.46829 * 60.00205 * 5 4 3 33 33 H 1.09003 * 109.47138 * 299.99930 * 5 4 3 34 34 H 0.96994 * 119.99689 * 359.97438 * 8 6 5 35 35 H 1.09010 * 109.88205 * 144.41448 * 11 9 8 36 36 H 1.08994 * 109.88352 * 23.25382 * 11 9 8 37 37 H 0.97005 * 120.00046 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.36244 * 94.48455 * 21 12 11 39 39 H 1.08997 * 110.36930 * 216.80538 * 21 12 11 40 40 H 0.96705 * 114.00230 * 67.95507 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 6 4.2621 3.2100 -0.0001 6 6 5.7595 3.3799 -0.0002 7 8 6.4804 2.4046 0.0007 8 7 6.2976 4.6156 -0.0003 9 6 7.7532 4.7806 0.0001 10 1 8.2274 4.0110 -0.6089 11 6 8.3053 4.7539 1.4410 12 7 8.4443 6.1497 1.8812 13 6 8.9224 6.5591 3.0974 14 1 9.2360 5.8284 3.8282 15 6 9.0041 7.9134 3.3908 16 7 8.6215 8.8040 2.5004 17 14 9.6557 8.4720 5.0500 18 1 11.1271 8.6547 4.9679 19 1 9.0171 9.7592 5.4247 20 1 9.3408 7.4459 6.0763 21 6 7.9778 7.0354 0.7990 22 6 8.1451 6.1976 -0.4959 23 1 9.1768 6.2171 -0.8473 24 8 7.2512 6.6489 -1.5153 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.8428 3.6801 0.8895 33 1 3.8436 3.6791 -0.8906 34 1 5.7210 5.3955 -0.0007 35 1 9.2778 4.2617 1.4563 36 1 7.6104 4.2265 2.0944 37 1 8.6782 9.7504 2.7056 38 1 6.9312 7.2998 0.9499 39 1 8.5938 7.9333 0.7515 40 1 7.4563 7.5302 -1.8564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219268035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:53 Heat of formation + Delta-G solvation = -86.997552 kcal Electronic energy + Delta-G solvation = -20796.399640 eV Core-core repulsion = 17544.112180 eV Total energy + Delta-G solvation = -3252.287460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08702 -39.30158 -36.65063 -35.56772 -35.35872 -33.65229 -31.45436 -29.84007 -28.66612 -28.08884 -26.32601 -22.87761 -22.33723 -22.03324 -21.26947 -19.09293 -18.48268 -18.09920 -17.50457 -16.97527 -16.78592 -16.52464 -16.14823 -15.78511 -15.15168 -14.92139 -14.81535 -14.44707 -14.34493 -14.31828 -13.90589 -13.77028 -13.27187 -13.18735 -12.87336 -12.76701 -12.71231 -12.38981 -12.09308 -12.06277 -11.95515 -11.70935 -11.64521 -11.06900 -10.87869 -10.84612 -10.76600 -10.13187 -8.95551 -8.69190 -7.82291 -5.27205 0.44952 1.47067 1.47802 1.52420 1.56682 1.60507 2.15977 2.45944 3.08316 3.28783 3.64692 3.68035 3.80850 3.91814 3.96997 3.97320 4.07132 4.24367 4.31203 4.40504 4.50124 4.57246 4.63502 4.68802 4.84829 4.86423 4.89211 5.16208 5.20817 5.39372 5.39907 5.43063 5.48536 5.71040 6.23219 6.47453 6.86259 7.05958 7.15729 7.70126 8.32245 9.18819 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.003299 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.913048 B = 8486.097220 C = 9072.501557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.088 4.088 4 S -0.255 6.255 5 C -0.109 4.109 6 C 0.525 3.475 7 O -0.568 6.568 8 N -0.690 5.690 9 C 0.154 3.846 10 H 0.096 0.904 11 C 0.127 3.873 12 N -0.618 5.618 13 C -0.242 4.242 14 H 0.076 0.924 15 C -0.059 4.059 16 N -0.944 5.944 17 Si 0.980 3.020 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.276 1.276 21 C 0.135 3.865 22 C 0.089 3.911 23 H 0.083 0.917 24 O -0.560 6.560 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.413 0.587 35 H 0.036 0.964 36 H 0.017 0.983 37 H 0.250 0.750 38 H 0.002 0.998 39 H 0.084 0.916 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 -9.000 -8.694 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.236 4.236 4 S -0.028 6.028 5 C -0.260 4.260 6 C 0.311 3.689 7 O -0.447 6.447 8 N -0.341 5.341 9 C 0.047 3.953 10 H 0.114 0.886 11 C 0.000 4.000 12 N -0.346 5.346 13 C -0.371 4.371 14 H 0.094 0.906 15 C -0.252 4.252 16 N -0.593 5.593 17 Si 0.808 3.192 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.201 1.201 21 C 0.010 3.990 22 C 0.028 3.972 23 H 0.101 0.899 24 O -0.367 6.367 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.249 0.751 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.102 0.898 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.144 -10.926 -8.486 19.083 hybrid contribution -0.212 2.423 1.008 2.633 sum -13.356 -8.502 -7.478 17.510 Atomic orbital electron populations 1.21735 0.93053 1.02765 1.02595 1.21247 0.97171 0.93315 1.02877 1.23619 0.91475 1.02461 1.06084 1.87737 1.08840 1.07980 1.98276 1.23395 0.94992 0.98387 1.09233 1.20210 0.90272 0.82898 0.75545 1.90707 1.63307 1.39615 1.51072 1.45528 1.07107 1.07919 1.73555 1.21800 0.81212 0.97073 0.95197 0.88589 1.21799 0.97702 0.87019 0.93450 1.44569 1.74816 1.00776 1.14389 1.19395 1.34752 0.91650 0.91313 0.90614 1.25550 1.02066 0.95650 1.01935 1.69951 1.54148 1.00380 1.34806 0.85063 0.77767 0.77214 0.79156 1.21057 1.21714 1.20073 1.22416 0.97023 0.94679 0.84905 1.23321 0.93222 0.92488 0.88196 0.89917 1.86300 1.55771 1.39628 1.55022 0.92084 0.91814 0.91474 0.91450 0.91785 0.89115 0.88615 0.85509 0.84477 0.75111 0.94577 0.96517 0.94035 0.98002 0.89779 0.75151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.11 -1.55 5.94 30.59 0.18 -1.37 16 3 C -0.09 -1.40 5.94 71.98 0.43 -0.98 16 4 S -0.25 -6.50 20.87 -56.49 -1.18 -7.68 16 5 C -0.11 -2.54 6.42 71.24 0.46 -2.08 16 6 C 0.52 16.98 7.85 87.66 0.69 17.67 16 7 O -0.57 -22.90 15.59 -3.02 -0.05 -22.94 16 8 N -0.69 -22.22 4.78 -436.93 -2.09 -24.31 16 9 C 0.15 5.57 3.14 46.18 0.14 5.72 16 10 H 0.10 3.46 7.69 -2.39 -0.02 3.44 16 11 C 0.13 5.52 6.98 86.73 0.61 6.12 16 12 N -0.62 -31.09 3.39 -691.57 -2.35 -33.44 16 13 C -0.24 -13.41 10.27 84.03 0.86 -12.55 16 14 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 15 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 16 N -0.94 -53.19 10.08 21.65 0.22 -52.97 16 17 Si 0.98 44.62 29.55 68.60 2.03 46.64 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 C 0.14 6.11 5.62 86.93 0.49 6.60 16 22 C 0.09 3.08 4.23 32.06 0.14 3.22 16 23 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 24 O -0.56 -15.93 12.63 -148.98 -1.88 -17.82 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.41 12.15 8.20 -92.71 -0.76 11.39 16 35 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.02 0.78 8.04 -2.39 -0.02 0.76 16 37 H 0.25 13.67 8.31 -92.70 -0.77 12.90 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.08 4.30 5.85 -2.39 -0.01 4.29 16 40 H 0.40 8.26 9.12 -74.05 -0.68 7.58 16 Total: -1.00 -69.23 342.77 -0.52 -69.75 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.39 Total: 23.92 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 5.17 Total: 18.84 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.22 Total: -110.72 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.93 Total: -40.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.18 Total: -7.68 kcal Total: -69.23 -0.52 -69.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219268035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.244 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds