Wall clock time and date at job start Tue Mar 31 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81394 * 102.99708 * 2 1 4 4 H 1.08995 * 109.47342 * 304.99128 * 3 2 1 5 5 C 1.52998 * 109.47534 * 64.99934 * 3 2 1 6 6 C 1.53005 * 109.46874 * 184.99832 * 3 2 1 7 7 C 1.50698 * 109.47347 * 64.99987 * 6 3 2 8 8 O 1.21285 * 119.99523 * 359.97438 * 7 6 3 9 9 N 1.34771 * 120.00127 * 180.02562 * 7 6 3 10 10 C 1.46505 * 120.00074 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.88462 * 34.29936 * 10 9 7 12 12 C 1.54905 * 111.00531 * 270.41999 * 10 9 7 13 13 N 1.47530 * 104.77961 * 204.90006 * 12 10 9 14 14 C 1.36941 * 125.63620 * 204.08245 * 13 12 10 15 15 H 1.07999 * 119.99774 * 354.83267 * 14 13 12 16 16 C 1.38812 * 119.99993 * 174.83519 * 14 13 12 17 17 N 1.31618 * 120.00065 * 7.05146 * 16 14 13 18 18 Si 1.86803 * 119.99807 * 187.05715 * 16 14 13 19 19 H 1.48491 * 109.47407 * 94.98286 * 18 16 14 20 20 H 1.48497 * 109.46770 * 214.98421 * 18 16 14 21 21 H 1.48499 * 109.46773 * 334.98232 * 18 16 14 22 22 C 1.47024 * 108.71833 * 24.12212 * 13 12 10 23 23 C 1.54331 * 107.26905 * 358.93799 * 22 13 12 24 24 H 1.08991 * 110.72175 * 219.44641 * 23 22 13 25 25 O 1.42898 * 110.71787 * 96.17205 * 23 22 13 26 26 H 1.08998 * 109.47395 * 300.00113 * 1 2 3 27 27 H 1.09002 * 109.46735 * 60.00692 * 1 2 3 28 28 H 1.09000 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46828 * 300.00041 * 5 3 2 30 30 H 1.09004 * 109.46943 * 59.99550 * 5 3 2 31 31 H 1.08999 * 109.47060 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47270 * 304.99547 * 6 3 2 33 33 H 1.08998 * 109.47180 * 185.00319 * 6 3 2 34 34 H 0.97007 * 120.00038 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.36425 * 323.71265 * 12 10 9 36 36 H 1.08999 * 110.37034 * 86.04099 * 12 10 9 37 37 H 0.97002 * 119.99705 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.88276 * 239.52384 * 22 13 12 39 39 H 1.08994 * 110.01720 * 118.42674 * 22 13 12 40 40 H 0.96706 * 114.00100 * 66.47933 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2540 -0.8419 5 6 1.7427 2.4016 1.3073 6 6 3.7369 1.9412 -0.1257 7 6 4.1920 1.4270 -1.4672 8 8 3.3841 0.9664 -2.2458 9 7 5.4967 1.4779 -1.8011 10 6 5.9391 0.9775 -3.1051 11 1 5.1843 1.1635 -3.8691 12 6 6.2943 -0.5284 -3.0305 13 7 7.2525 -0.7441 -4.1313 14 6 7.4935 -1.9382 -4.7569 15 1 7.0222 -2.8409 -4.3973 16 6 8.3437 -1.9882 -5.8531 17 7 9.0254 -0.9193 -6.2066 18 14 8.5200 -3.5728 -6.8266 19 1 7.5977 -3.5443 -7.9900 20 1 9.9188 -3.7054 -7.3070 21 1 8.1838 -4.7282 -5.9565 22 6 7.9064 0.5348 -4.4450 23 6 7.3022 1.6006 -3.5065 24 1 7.1549 2.5418 -4.0360 25 8 8.1298 1.7897 -2.3570 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.6635 2.2778 1.3968 30 1 2.2353 1.9150 2.1491 31 1 1.9883 3.4636 1.3074 32 1 4.2339 1.3804 0.6660 33 1 3.9902 2.9976 -0.0365 34 1 6.1428 1.8459 -1.1782 35 1 6.7585 -0.7617 -2.0722 36 1 5.4019 -1.1365 -3.1787 37 1 9.6191 -0.9543 -6.9729 38 1 7.7149 0.8042 -5.4837 39 1 8.9801 0.4566 -4.2744 40 1 8.9938 2.1768 -2.5538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219483900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:42 Heat of formation + Delta-G solvation = -59.778258 kcal Electronic energy + Delta-G solvation = -21300.235724 eV Core-core repulsion = 18049.128581 eV Total energy + Delta-G solvation = -3251.107143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.64902 -37.91612 -34.85866 -34.62895 -33.81941 -31.63347 -29.46575 -28.61485 -27.84796 -26.63900 -24.39030 -22.41086 -20.60525 -20.25021 -19.77873 -17.47030 -16.79994 -16.67376 -16.63487 -15.53497 -15.08376 -14.77458 -14.34081 -14.23611 -13.97543 -13.70752 -13.48302 -13.05381 -12.94184 -12.79364 -12.64454 -12.35988 -12.15543 -11.98280 -11.54009 -11.37962 -11.24853 -10.89796 -10.82487 -10.47286 -10.39352 -10.08763 -9.81776 -9.79179 -9.54028 -9.27073 -8.62332 -8.55355 -7.45133 -6.83186 -5.72937 -3.04162 1.67787 2.57466 2.94810 3.39823 3.43619 3.48498 3.50546 4.47037 4.48994 4.57030 4.71749 4.99487 5.03239 5.08639 5.17568 5.25960 5.34348 5.35369 5.41110 5.45740 5.56759 5.57910 5.70553 5.78140 5.86253 5.92328 6.13784 6.27368 6.70223 6.75605 7.01604 7.36099 7.47550 7.76673 7.91081 8.09518 8.23285 8.58428 9.21292 9.81643 10.46895 11.39847 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.023229 B = 0.003845 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.083707 B = 7279.952789 C = 8248.570202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.232 6.232 3 C -0.045 4.045 4 H 0.093 0.907 5 C -0.147 4.147 6 C -0.123 4.123 7 C 0.502 3.498 8 O -0.522 6.522 9 N -0.711 5.711 10 C 0.141 3.859 11 H 0.102 0.898 12 C 0.132 3.868 13 N -0.601 5.601 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.925 5.925 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.060 0.940 25 O -0.567 6.567 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.405 0.595 35 H 0.024 0.976 36 H 0.046 0.954 37 H 0.252 0.748 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 10.637 14.331 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.006 6.006 3 C -0.174 4.174 4 H 0.111 0.889 5 C -0.206 4.206 6 C -0.165 4.165 7 C 0.287 3.713 8 O -0.397 6.397 9 N -0.363 5.363 10 C 0.036 3.964 11 H 0.120 0.880 12 C 0.005 3.995 13 N -0.328 5.328 14 C -0.352 4.352 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.573 5.573 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.077 0.923 25 O -0.374 6.374 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.240 0.760 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.507 9.074 13.871 20.178 hybrid contribution 0.186 0.623 -0.633 0.908 sum -11.320 9.697 13.238 19.936 Atomic orbital electron populations 1.23375 0.95490 1.06168 1.04387 1.87134 1.05970 1.09833 1.97670 1.22859 0.97953 0.95403 1.01218 0.88875 1.22111 1.01429 1.00825 0.96267 1.21511 0.94450 1.03508 0.96984 1.20444 0.82683 0.79328 0.88833 1.90762 1.52791 1.44521 1.51628 1.45764 1.07907 1.63417 1.19195 1.22285 0.93779 0.95561 0.84823 0.88023 1.21852 0.93116 0.92507 0.92053 1.44315 1.44060 1.05844 1.38581 1.19115 1.23296 0.85212 1.07543 0.90247 1.24799 0.99301 0.97740 0.98615 1.69930 1.30774 1.27783 1.28861 0.86078 0.76922 0.82429 0.80282 1.21573 1.21807 1.20573 1.21855 0.96353 0.83382 0.95586 1.23505 0.90453 0.98081 0.87185 0.92259 1.86252 1.30864 1.86377 1.33861 0.91022 0.90634 0.88386 0.92348 0.91234 0.91664 0.88180 0.87812 0.76025 0.95777 0.93607 0.93782 0.92594 0.93174 0.77377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 10.45 101.05 1.06 -0.14 16 2 S -0.23 -3.04 20.24 -107.50 -2.18 -5.22 16 3 C -0.05 -0.48 2.44 -26.73 -0.07 -0.54 16 4 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 5 C -0.15 -1.09 9.10 37.16 0.34 -0.75 16 6 C -0.12 -1.30 5.17 -27.88 -0.14 -1.44 16 7 C 0.50 7.62 7.54 -10.99 -0.08 7.54 16 8 O -0.52 -9.90 14.48 5.55 0.08 -9.82 16 9 N -0.71 -10.93 5.18 -51.73 -0.27 -11.19 16 10 C 0.14 2.68 3.25 -65.78 -0.21 2.46 16 11 H 0.10 2.06 7.63 -51.93 -0.40 1.67 16 12 C 0.13 3.00 6.93 -2.47 -0.02 2.98 16 13 N -0.60 -15.84 3.40 -169.99 -0.58 -16.42 16 14 C -0.22 -6.43 10.27 -15.06 -0.15 -6.58 16 15 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 16 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 17 N -0.93 -27.10 10.36 55.49 0.57 -26.52 16 18 Si 0.91 22.52 29.56 -169.99 -5.02 17.49 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.15 3.66 5.15 -3.06 -0.02 3.64 16 23 C 0.07 1.23 4.20 -24.89 -0.10 1.12 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 O -0.57 -9.04 12.14 -35.23 -0.43 -9.47 16 26 H 0.07 0.54 7.14 -51.93 -0.37 0.17 16 27 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.06 0.40 6.92 -51.93 -0.36 0.04 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 5.43 7.57 -40.82 -0.31 5.12 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.46 7.30 -51.93 -0.38 1.08 16 39 H 0.05 1.30 7.54 -51.93 -0.39 0.91 16 40 H 0.38 4.66 9.12 45.56 0.42 5.07 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -33.80 337.25 -7.79 -41.59 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.55 Total: 6.53 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 0.50 Total: 7.94 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.27 Total: -54.13 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.35 Total: -19.29 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.18 Total: -5.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.80 -7.79 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219483900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.185 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds