Wall clock time and date at job start Tue Mar 31 2020 03:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00436 * 2 1 4 4 C 1.52994 * 109.47480 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47106 * 55.00187 * 4 3 2 6 6 O 1.42893 * 109.47467 * 295.00347 * 4 3 2 7 7 C 1.42906 * 114.00479 * 149.99821 * 6 4 3 8 8 C 1.50704 * 109.47448 * 174.99606 * 4 3 2 9 9 O 1.21276 * 119.99629 * 114.99909 * 8 4 3 10 10 N 1.34769 * 120.00259 * 295.00860 * 8 4 3 11 11 C 1.46500 * 120.00173 * 179.97438 * 10 8 4 12 12 H 1.09001 * 110.88507 * 34.29966 * 11 10 8 13 13 C 1.54899 * 111.00702 * 270.41828 * 11 10 8 14 14 N 1.47471 * 104.81390 * 204.95100 * 13 11 10 15 15 C 1.36938 * 125.63085 * 204.14736 * 14 13 11 16 16 H 1.08000 * 119.99866 * 354.79120 * 15 14 13 17 17 C 1.38816 * 119.99888 * 174.78790 * 15 14 13 18 18 N 1.31615 * 120.00268 * 7.06704 * 17 15 14 19 19 Si 1.86804 * 119.99548 * 187.06137 * 17 15 14 20 20 H 1.48500 * 109.46691 * 94.99095 * 19 17 15 21 21 H 1.48503 * 109.46623 * 214.98965 * 19 17 15 22 22 H 1.48495 * 109.47339 * 334.98827 * 19 17 15 23 23 C 1.47022 * 108.72242 * 24.06555 * 14 13 11 24 24 C 1.54329 * 107.26966 * 358.97995 * 23 14 13 25 25 H 1.09003 * 110.86942 * 219.36857 * 24 23 14 26 26 O 1.42902 * 110.71814 * 96.16703 * 24 23 14 27 27 H 1.09007 * 109.47031 * 59.99814 * 1 2 3 28 28 H 1.08992 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47209 * 300.00362 * 1 2 3 30 30 H 1.09000 * 109.46926 * 59.99693 * 3 2 1 31 31 H 1.09003 * 109.46950 * 300.00207 * 3 2 1 32 32 H 1.08991 * 109.47364 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46777 * 300.00408 * 7 6 4 34 34 H 1.08997 * 109.46721 * 59.99764 * 7 6 4 35 35 H 0.97004 * 120.00472 * 359.97438 * 10 8 4 36 36 H 1.09001 * 110.37233 * 323.75373 * 13 11 10 37 37 H 1.08999 * 110.36908 * 86.07645 * 13 11 10 38 38 H 0.96994 * 120.00005 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88677 * 239.56091 * 23 14 13 40 40 H 1.08998 * 109.87814 * 118.39391 * 23 14 13 41 41 H 0.96700 * 113.99995 * 66.48067 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8410 6 8 3.9649 0.5796 1.2219 7 6 5.1683 -0.1818 1.1017 8 6 4.1482 2.5559 -0.1233 9 8 4.8063 3.0105 0.7882 10 7 3.9645 3.2770 -1.2469 11 6 4.5596 4.6103 -1.3671 12 1 5.5209 4.6543 -0.8552 13 6 3.5957 5.6988 -0.8330 14 7 3.9932 6.9325 -1.5366 15 6 3.7758 8.2094 -1.0924 16 1 3.2005 8.3781 -0.1941 17 6 4.2951 9.2871 -1.7967 18 7 4.8754 9.0936 -2.9620 19 14 4.1699 11.0120 -1.0905 20 1 5.4212 11.3402 -0.3613 21 1 3.9701 11.9853 -2.1942 22 1 3.0189 11.0815 -0.1548 23 6 4.6630 6.5645 -2.7925 24 6 4.7031 5.0231 -2.8559 25 1 5.6528 4.6757 -3.2627 26 8 3.6104 4.5202 -3.6275 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 5.4272 -0.6075 2.0711 33 1 5.0195 -0.9848 0.3798 34 1 5.9761 0.4666 0.7626 35 1 3.4382 2.9133 -1.9761 36 1 2.5637 5.4421 -1.0719 37 1 3.7182 5.8190 0.2434 38 1 5.2385 9.8465 -3.4540 39 1 5.6778 6.9624 -2.8020 40 1 4.1012 6.9559 -3.6406 41 1 3.6525 4.7507 -4.5657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220314658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:55 Heat of formation + Delta-G solvation = -137.791867 kcal Electronic energy + Delta-G solvation = -23985.736924 eV Core-core repulsion = 20288.493986 eV Total energy + Delta-G solvation = -3697.242938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14961 -38.51315 -37.73207 -36.93243 -34.87860 -34.04028 -31.94100 -30.86900 -28.48336 -27.24818 -26.86567 -26.08211 -24.55819 -23.56284 -20.81088 -20.41789 -19.90760 -17.87897 -17.31931 -17.14545 -16.60989 -16.49873 -15.83664 -15.52111 -15.14697 -14.85918 -14.61968 -14.26000 -14.15706 -13.95193 -13.32408 -13.12000 -12.80723 -12.68450 -12.51525 -12.26899 -11.94505 -11.53944 -11.35249 -11.20253 -10.96109 -10.87832 -10.60421 -10.53819 -10.46934 -10.12937 -9.92298 -9.85592 -9.42406 -9.23014 -8.75144 -8.65090 -6.90006 -5.78579 -3.10322 2.55207 3.06642 3.39121 3.44797 3.46226 3.56997 3.73690 4.45893 4.51810 4.69863 4.77466 4.91094 5.09389 5.15378 5.21533 5.24347 5.25803 5.34252 5.37159 5.44949 5.47276 5.49071 5.62494 5.68547 5.83517 6.02567 6.17720 6.53668 6.63516 6.80948 6.87810 6.93657 7.29495 7.41030 7.68766 7.74107 8.01987 8.17054 8.36350 9.15232 9.75512 10.40127 11.34139 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.003721 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.122497 B = 7524.056357 C = 7600.345808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.069 3.931 4 C 0.079 3.921 5 H 0.093 0.907 6 O -0.351 6.351 7 C 0.031 3.969 8 C 0.488 3.512 9 O -0.520 6.520 10 N -0.705 5.705 11 C 0.138 3.862 12 H 0.104 0.896 13 C 0.132 3.868 14 N -0.600 5.600 15 C -0.226 4.226 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.924 5.924 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.154 3.846 24 C 0.068 3.932 25 H 0.061 0.939 26 O -0.568 6.568 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.406 0.594 36 H 0.025 0.975 37 H 0.045 0.955 38 H 0.253 0.747 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -18.648 -0.100 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.008 4.008 4 C 0.017 3.983 5 H 0.111 0.889 6 O -0.268 6.268 7 C -0.065 4.065 8 C 0.272 3.728 9 O -0.395 6.395 10 N -0.359 5.359 11 C 0.032 3.968 12 H 0.122 0.878 13 C 0.004 3.996 14 N -0.327 5.327 15 C -0.354 4.354 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.572 5.572 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.028 3.972 24 C 0.009 3.991 25 H 0.079 0.921 26 O -0.375 6.375 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.242 0.758 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.475 -18.484 1.269 18.851 hybrid contribution -0.086 1.280 -0.877 1.554 sum -3.561 -17.205 0.392 17.574 Atomic orbital electron populations 1.22771 0.80589 1.02826 1.00353 1.87875 1.19968 1.26941 1.95517 1.22501 0.90370 0.85700 1.02207 1.21972 0.94000 0.92251 0.90118 0.88897 1.88009 1.42065 1.67013 1.29709 1.22845 0.86679 0.94293 1.02717 1.21050 0.81745 0.87158 0.82831 1.90736 1.39477 1.70860 1.38475 1.45873 1.54133 1.17667 1.18252 1.22377 0.98417 0.81112 0.94871 0.87825 1.21838 0.95273 0.86294 0.96164 1.44291 1.68334 1.00426 1.19695 1.19103 1.27976 0.80933 1.07424 0.90228 1.24805 1.00469 0.98097 0.96950 1.69920 1.44254 1.29813 1.13237 0.86076 0.77753 0.83905 0.77937 1.21526 1.21757 1.20570 1.21872 0.98633 0.86442 0.90240 1.23512 0.88261 0.97176 0.90199 0.92092 1.86234 1.48416 1.78688 1.24135 0.93796 0.89502 0.93805 0.91479 0.90965 0.89285 0.93898 0.93686 0.75806 0.95701 0.93652 0.93705 0.92483 0.93033 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.41 10.67 -40.08 -0.43 -4.83 16 3 C 0.07 0.80 5.57 37.15 0.21 1.01 16 4 C 0.08 1.00 2.80 -27.88 -0.08 0.92 16 5 H 0.09 0.97 7.79 -51.93 -0.40 0.56 16 6 O -0.35 -5.02 9.85 -59.70 -0.59 -5.61 16 7 C 0.03 0.34 10.81 101.05 1.09 1.43 16 8 C 0.49 7.65 7.13 -10.99 -0.08 7.57 16 9 O -0.52 -10.34 16.20 -14.30 -0.23 -10.57 16 10 N -0.71 -10.53 5.08 -51.74 -0.26 -10.80 16 11 C 0.14 2.52 3.25 -65.79 -0.21 2.31 16 12 H 0.10 2.04 7.63 -51.93 -0.40 1.64 16 13 C 0.13 2.87 6.92 -2.51 -0.02 2.86 16 14 N -0.60 -15.37 3.40 -170.04 -0.58 -15.95 16 15 C -0.23 -6.36 10.26 -15.06 -0.15 -6.51 16 16 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -26.57 10.36 55.49 0.57 -25.99 16 19 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.15 3.55 5.15 -3.06 -0.02 3.53 16 24 C 0.07 1.19 4.20 -24.89 -0.10 1.09 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 O -0.57 -8.61 12.13 -35.23 -0.43 -9.04 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.72 7.77 -51.93 -0.40 0.31 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.41 5.21 7.27 -40.82 -0.30 4.91 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.06 1.45 7.30 -51.93 -0.38 1.08 16 40 H 0.05 1.30 7.54 -51.93 -0.39 0.90 16 41 H 0.38 4.41 9.12 45.56 0.42 4.82 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -34.17 343.08 -5.77 -39.94 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.63 Total: 5.32 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 1.65 Total: 15.27 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.27 Total: -52.74 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.67 Total: -30.05 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.17 -5.77 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220314658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.856 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds