Wall clock time and date at job start Tue Mar 31 2020 03:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00436 * 2 1 4 4 C 1.52994 * 109.47480 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47106 * 55.00187 * 4 3 2 6 6 O 1.42893 * 109.47467 * 295.00347 * 4 3 2 7 7 C 1.42906 * 114.00479 * 149.99821 * 6 4 3 8 8 C 1.50704 * 109.47448 * 174.99606 * 4 3 2 9 9 O 1.21276 * 119.99629 * 114.99909 * 8 4 3 10 10 N 1.34769 * 120.00259 * 295.00860 * 8 4 3 11 11 C 1.46500 * 120.00173 * 179.97438 * 10 8 4 12 12 H 1.09001 * 110.88507 * 34.29966 * 11 10 8 13 13 C 1.54899 * 111.00702 * 270.41828 * 11 10 8 14 14 N 1.47471 * 104.81390 * 204.95100 * 13 11 10 15 15 C 1.36938 * 125.63085 * 204.14736 * 14 13 11 16 16 H 1.08000 * 119.99866 * 354.79120 * 15 14 13 17 17 C 1.38816 * 119.99888 * 174.78790 * 15 14 13 18 18 N 1.31615 * 120.00268 * 7.06704 * 17 15 14 19 19 Si 1.86804 * 119.99548 * 187.06137 * 17 15 14 20 20 H 1.48500 * 109.46691 * 94.99095 * 19 17 15 21 21 H 1.48503 * 109.46623 * 214.98965 * 19 17 15 22 22 H 1.48495 * 109.47339 * 334.98827 * 19 17 15 23 23 C 1.47022 * 108.72242 * 24.06555 * 14 13 11 24 24 C 1.54329 * 107.26966 * 358.97995 * 23 14 13 25 25 H 1.09003 * 110.86942 * 219.36857 * 24 23 14 26 26 O 1.42902 * 110.71814 * 96.16703 * 24 23 14 27 27 H 1.09007 * 109.47031 * 59.99814 * 1 2 3 28 28 H 1.08992 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47209 * 300.00362 * 1 2 3 30 30 H 1.09000 * 109.46926 * 59.99693 * 3 2 1 31 31 H 1.09003 * 109.46950 * 300.00207 * 3 2 1 32 32 H 1.08991 * 109.47364 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46777 * 300.00408 * 7 6 4 34 34 H 1.08997 * 109.46721 * 59.99764 * 7 6 4 35 35 H 0.97004 * 120.00472 * 359.97438 * 10 8 4 36 36 H 1.09001 * 110.37233 * 323.75373 * 13 11 10 37 37 H 1.08999 * 110.36908 * 86.07645 * 13 11 10 38 38 H 0.96994 * 120.00005 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88677 * 239.56091 * 23 14 13 40 40 H 1.08998 * 109.87814 * 118.39391 * 23 14 13 41 41 H 0.96700 * 113.99995 * 66.48067 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8410 6 8 3.9649 0.5796 1.2219 7 6 5.1683 -0.1818 1.1017 8 6 4.1482 2.5559 -0.1233 9 8 4.8063 3.0105 0.7882 10 7 3.9645 3.2770 -1.2469 11 6 4.5596 4.6103 -1.3671 12 1 5.5209 4.6543 -0.8552 13 6 3.5957 5.6988 -0.8330 14 7 3.9932 6.9325 -1.5366 15 6 3.7758 8.2094 -1.0924 16 1 3.2005 8.3781 -0.1941 17 6 4.2951 9.2871 -1.7967 18 7 4.8754 9.0936 -2.9620 19 14 4.1699 11.0120 -1.0905 20 1 5.4212 11.3402 -0.3613 21 1 3.9701 11.9853 -2.1942 22 1 3.0189 11.0815 -0.1548 23 6 4.6630 6.5645 -2.7925 24 6 4.7031 5.0231 -2.8559 25 1 5.6528 4.6757 -3.2627 26 8 3.6104 4.5202 -3.6275 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 5.4272 -0.6075 2.0711 33 1 5.0195 -0.9848 0.3798 34 1 5.9761 0.4666 0.7626 35 1 3.4382 2.9133 -1.9761 36 1 2.5637 5.4421 -1.0719 37 1 3.7182 5.8190 0.2434 38 1 5.2385 9.8465 -3.4540 39 1 5.6778 6.9624 -2.8020 40 1 4.1012 6.9559 -3.6406 41 1 3.6525 4.7507 -4.5657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220314658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:54 Heat of formation + Delta-G solvation = -166.226561 kcal Electronic energy + Delta-G solvation = -23986.969945 eV Core-core repulsion = 20288.493986 eV Total energy + Delta-G solvation = -3698.475959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40534 -39.85541 -38.80389 -37.96903 -36.45948 -35.50879 -33.73208 -32.05067 -30.18052 -28.81550 -27.67884 -27.09604 -26.29521 -24.66658 -22.46657 -21.89077 -21.36120 -19.34514 -18.66734 -18.46166 -17.91826 -17.46513 -16.91185 -16.71440 -16.55109 -16.19930 -15.91577 -15.73060 -15.45913 -15.07997 -14.77845 -14.59730 -14.36953 -14.17056 -13.91643 -13.34847 -13.20533 -12.85220 -12.78455 -12.72267 -12.34756 -12.28574 -12.11453 -12.08503 -11.96020 -11.89663 -11.63887 -10.88325 -10.75809 -10.70845 -10.45032 -10.14607 -8.95706 -7.91300 -5.25616 1.35076 1.44873 1.46928 1.55362 1.85909 2.46559 2.68611 2.78426 3.17758 3.28807 3.57113 3.74363 3.81584 3.86562 3.91264 3.97586 4.24888 4.31242 4.38355 4.47909 4.53759 4.56038 4.59479 4.62201 4.65450 4.81954 4.83235 4.90159 4.99759 5.34312 5.40641 5.47253 5.64096 5.94474 6.10784 6.13568 6.51588 6.87259 7.05603 7.15522 7.69602 8.33349 9.19060 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.003721 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.122497 B = 7524.056357 C = 7600.345808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.072 3.928 4 C 0.084 3.916 5 H 0.124 0.876 6 O -0.377 6.377 7 C 0.026 3.974 8 C 0.491 3.509 9 O -0.567 6.567 10 N -0.689 5.689 11 C 0.150 3.850 12 H 0.090 0.910 13 C 0.132 3.868 14 N -0.622 5.622 15 C -0.250 4.250 16 H 0.076 0.924 17 C -0.056 4.056 18 N -0.945 5.945 19 Si 0.977 3.023 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.271 1.271 23 C 0.158 3.842 24 C 0.095 3.905 25 H 0.093 0.907 26 O -0.563 6.563 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.421 0.579 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.250 0.750 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 -20.299 -0.849 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C -0.005 4.005 4 C 0.023 3.977 5 H 0.141 0.859 6 O -0.295 6.295 7 C -0.070 4.070 8 C 0.277 3.723 9 O -0.445 6.445 10 N -0.344 5.344 11 C 0.043 3.957 12 H 0.108 0.892 13 C 0.005 3.995 14 N -0.349 5.349 15 C -0.378 4.378 16 H 0.093 0.907 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.805 3.195 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.196 1.196 23 C 0.033 3.967 24 C 0.035 3.965 25 H 0.111 0.889 26 O -0.372 6.372 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.259 0.741 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.188 -20.182 0.488 20.618 hybrid contribution 0.068 1.752 -0.636 1.865 sum -4.120 -18.431 -0.149 18.886 Atomic orbital electron populations 1.22987 0.78989 1.04230 1.00992 1.87839 1.21691 1.26600 1.95625 1.22457 0.89578 0.86059 1.02417 1.22021 0.94568 0.90336 0.90822 0.85853 1.87983 1.43205 1.67393 1.30874 1.23027 0.85335 0.94429 1.04234 1.21680 0.80712 0.88059 0.81889 1.90720 1.41584 1.72128 1.40045 1.45668 1.53836 1.16115 1.18752 1.21959 0.96864 0.81759 0.95095 0.89196 1.21885 0.96234 0.86419 0.94950 1.44564 1.68483 1.00791 1.21045 1.19405 1.28288 0.82617 1.07537 0.90650 1.25585 1.00458 1.01611 0.97336 1.70106 1.44734 1.30481 1.14000 0.85092 0.77802 0.79361 0.77267 1.21413 1.21559 1.19628 1.21745 0.96055 0.90521 0.88416 1.23106 0.90392 0.92835 0.90214 0.88906 1.86193 1.47496 1.77884 1.25631 0.92540 0.87796 0.93792 0.92945 0.89131 0.88138 0.91449 0.94686 0.74069 0.95410 0.95566 0.94066 0.95611 0.95551 0.74948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -8.19 10.67 -144.34 -1.54 -9.73 16 3 C 0.07 1.52 5.57 71.98 0.40 1.92 16 4 C 0.08 1.97 2.80 29.85 0.08 2.06 16 5 H 0.12 2.14 7.79 -2.38 -0.02 2.12 16 6 O -0.38 -10.28 9.85 -125.59 -1.24 -11.52 16 7 C 0.03 0.52 10.81 113.37 1.23 1.74 16 8 C 0.49 14.79 7.13 87.66 0.63 15.41 16 9 O -0.57 -22.58 16.20 15.97 0.26 -22.32 16 10 N -0.69 -19.27 5.08 -435.99 -2.21 -21.48 16 11 C 0.15 5.37 3.25 46.38 0.15 5.52 16 12 H 0.09 3.53 7.63 -2.39 -0.02 3.51 16 13 C 0.13 5.81 6.92 86.84 0.60 6.41 16 14 N -0.62 -32.47 3.40 -691.87 -2.35 -34.82 16 15 C -0.25 -14.34 10.26 84.03 0.86 -13.48 16 16 H 0.08 4.25 7.84 -2.91 -0.02 4.22 16 17 C -0.06 -3.20 5.48 84.86 0.46 -2.73 16 18 N -0.94 -55.30 10.36 21.65 0.22 -55.08 16 19 Si 0.98 45.92 29.56 68.60 2.03 47.95 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.16 7.38 5.15 86.73 0.45 7.82 16 24 C 0.09 3.15 4.20 31.79 0.13 3.28 16 25 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 26 O -0.56 -15.41 12.13 -148.98 -1.81 -17.22 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.54 7.77 -2.39 -0.02 1.52 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.01 8.08 -2.39 -0.02 1.00 16 34 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.42 9.44 7.27 -92.71 -0.67 8.77 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.03 1.35 7.30 -2.39 -0.02 1.33 16 40 H 0.03 1.35 7.54 -2.39 -0.02 1.33 16 41 H 0.40 7.99 9.12 -74.06 -0.68 7.32 16 Total: -1.00 -75.43 343.08 -0.70 -76.13 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.31 Total: 18.55 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 6.24 Total: 29.55 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.34 Total: -111.38 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -4.33 Total: -60.79 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -75.43 -0.70 -76.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220314658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.095 kcal (2) G-P(sol) polarization free energy of solvation -75.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds