Wall clock time and date at job start Tue Mar 31 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00613 * 2 1 4 4 C 1.52993 * 109.47088 * 270.00151 * 3 2 1 5 5 F 1.39899 * 109.47362 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99889 * 179.97438 * 2 1 3 7 7 O 1.21348 * 120.00324 * 183.65590 * 6 2 1 8 8 C 1.49453 * 119.99971 * 3.38348 * 6 2 1 9 9 O 1.21353 * 120.00031 * 354.43011 * 8 6 2 10 10 N 1.34769 * 120.00333 * 174.43278 * 8 6 2 11 11 C 1.47023 * 125.64567 * 359.68772 * 10 8 6 12 12 C 1.54341 * 107.26483 * 178.85388 * 11 10 8 13 13 C 1.55157 * 103.02105 * 338.14027 * 12 11 10 14 14 O 1.42900 * 111.00661 * 277.23601 * 13 12 11 15 15 C 1.50700 * 111.03855 * 153.39634 * 13 12 11 16 16 H 1.08003 * 119.99448 * 6.33277 * 15 13 12 17 17 C 1.37875 * 120.00224 * 186.33517 * 15 13 12 18 18 N 1.31517 * 119.99661 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00081 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46992 * 89.99748 * 19 17 15 21 21 H 1.48499 * 109.47093 * 209.99481 * 19 17 15 22 22 H 1.48503 * 109.47192 * 330.00089 * 19 17 15 23 23 C 1.47429 * 125.65363 * 180.02562 * 10 8 6 24 24 H 1.08999 * 109.47408 * 264.00864 * 1 2 3 25 25 H 1.08997 * 109.46454 * 24.00825 * 1 2 3 26 26 H 1.08999 * 109.46978 * 144.00624 * 1 2 3 27 27 H 1.09001 * 109.46534 * 29.99817 * 3 2 1 28 28 H 1.09000 * 109.47626 * 149.99357 * 3 2 1 29 29 H 1.09010 * 109.46987 * 299.99534 * 4 3 2 30 30 H 1.09000 * 109.47535 * 59.99151 * 4 3 2 31 31 H 1.08999 * 109.88644 * 298.39935 * 11 10 8 32 32 H 1.09000 * 109.88591 * 59.56832 * 11 10 8 33 33 H 1.09002 * 110.84587 * 219.67775 * 12 11 10 34 34 H 1.08995 * 110.51924 * 96.45477 * 12 11 10 35 35 H 0.96697 * 113.99964 * 173.65059 * 14 13 12 36 36 H 0.96999 * 119.99585 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.35808 * 322.92473 * 23 10 8 38 38 H 1.08997 * 110.37025 * 85.13602 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1977 1.2686 0.0000 4 6 2.4526 1.7103 -1.4424 5 9 3.1518 2.9221 -1.4425 6 6 2.1389 -1.1672 0.0005 7 8 3.3505 -1.1684 0.0675 8 6 1.3936 -2.4604 -0.0753 9 8 0.1807 -2.4650 -0.0353 10 7 2.0683 -3.6216 -0.1880 11 6 3.5306 -3.7599 -0.2538 12 6 3.8442 -5.2681 -0.3492 13 6 2.5650 -5.9285 0.2296 14 8 2.6064 -5.9608 1.6576 15 6 2.3683 -7.3123 -0.3337 16 1 3.1279 -7.7520 -0.9631 17 6 1.2188 -8.0170 -0.0455 18 7 0.2942 -7.4817 0.7214 19 14 0.9748 -9.7321 -0.7443 20 1 1.5296 -10.7349 0.2002 21 1 -0.4753 -9.9853 -0.9396 22 1 1.6763 -9.8396 -2.0488 23 6 1.4624 -4.9629 -0.2727 24 1 -0.3634 -0.1073 1.0220 25 1 -0.3632 0.9388 -0.4181 26 1 -0.3633 -0.8315 -0.6040 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5139 29 1 3.0418 0.9505 -1.9563 30 1 1.5003 1.8406 -1.9564 31 1 3.9126 -3.2434 -1.1343 32 1 3.9831 -3.3454 0.6471 33 1 4.7158 -5.5220 0.2540 34 1 3.9938 -5.5622 -1.3880 35 1 1.7890 -6.2749 2.0678 36 1 -0.5147 -7.9773 0.9238 37 1 0.5838 -5.0234 0.3697 38 1 1.1942 -5.1937 -1.3036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326268344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:46 Heat of formation + Delta-G solvation = -150.099742 kcal Electronic energy + Delta-G solvation = -23812.761343 eV Core-core repulsion = 19991.524391 eV Total energy + Delta-G solvation = -3821.236953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.87268 -40.61800 -38.64137 -37.34225 -36.02539 -34.21942 -32.28625 -30.65973 -30.28924 -27.94971 -26.95560 -25.82559 -24.39420 -22.88462 -21.28835 -19.72709 -19.01017 -17.31094 -17.09856 -16.96109 -16.48381 -16.10426 -15.85735 -15.35192 -15.21035 -14.99243 -14.48966 -14.31084 -13.91596 -13.12675 -13.10806 -13.02657 -12.85965 -12.78833 -12.35791 -12.32610 -11.73980 -11.70090 -11.55268 -11.07980 -11.04996 -10.95811 -10.78692 -10.57389 -10.49911 -10.24971 -9.41323 -9.12874 -8.91990 -8.72353 -8.42971 -7.95607 -6.33471 -4.43049 1.67437 2.39652 3.17952 3.25794 3.28135 3.45057 3.63494 4.22245 4.38734 4.40853 4.57163 4.74285 4.94262 4.98096 5.14961 5.25427 5.43823 5.53234 5.66443 5.74895 5.77747 5.94553 6.01131 6.21340 6.27972 6.46840 6.68734 6.75845 6.79444 6.95400 7.13362 7.26269 7.68159 7.68892 7.96226 7.97867 8.36558 8.61282 9.24451 9.33077 10.73756 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.003871 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.486948 B = 7232.339319 C = 7590.945877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.594 5.594 3 C 0.083 3.917 4 C 0.047 3.953 5 F -0.213 7.213 6 C 0.509 3.491 7 O -0.513 6.513 8 C 0.509 3.491 9 O -0.531 6.531 10 N -0.572 5.572 11 C 0.109 3.891 12 C -0.121 4.121 13 C 0.248 3.752 14 O -0.581 6.581 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.894 5.894 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.092 3.908 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.381 0.619 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 13.909 -2.914 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.329 5.329 3 C -0.040 4.040 4 C -0.009 4.009 5 F -0.194 7.194 6 C 0.292 3.708 7 O -0.388 6.388 8 C 0.291 3.709 9 O -0.411 6.411 10 N -0.304 5.304 11 C -0.013 4.013 12 C -0.159 4.159 13 C 0.208 3.792 14 O -0.389 6.389 15 C -0.575 4.575 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.532 5.532 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.028 4.028 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.185 14.168 -2.872 14.505 hybrid contribution -0.869 -0.930 -0.240 1.295 sum 0.316 13.238 -3.112 13.603 Atomic orbital electron populations 1.22468 0.77124 1.04097 1.03985 1.47564 1.08398 1.04494 1.72479 1.22038 0.99761 0.85561 0.96658 1.22348 0.96982 0.82870 0.98689 1.92766 1.81471 1.47518 1.97652 1.20555 0.87575 0.85379 0.77280 1.90735 1.13582 1.87132 1.47327 1.19447 0.87173 0.84085 0.80183 1.90626 1.13083 1.85966 1.51392 1.48701 1.09022 1.06570 1.66090 1.22174 0.79558 0.97966 1.01615 1.22713 0.99813 0.92075 1.01316 1.19643 0.88123 0.91867 0.79587 1.86136 1.42790 1.89320 1.20659 1.21464 1.04335 0.99872 1.31869 0.91365 1.25084 0.95264 0.98681 0.94186 1.69709 1.08891 1.38146 1.36487 0.86384 0.77399 0.83513 0.79510 1.20354 1.21005 1.19665 1.23511 1.00029 0.77367 1.01913 0.92003 0.91863 0.86955 0.88951 0.88365 0.90280 0.90463 0.91936 0.90906 0.90452 0.90356 0.76935 0.91949 0.89029 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 9.55 59.85 0.57 1.30 16 2 N -0.59 -7.62 2.87 -182.09 -0.52 -8.14 16 3 C 0.08 0.85 5.86 -4.05 -0.02 0.83 16 4 C 0.05 0.45 7.88 37.15 0.29 0.75 16 5 F -0.21 -2.36 17.36 2.25 0.04 -2.32 16 6 C 0.51 8.38 7.69 -11.58 -0.09 8.29 16 7 O -0.51 -9.11 13.72 5.50 0.08 -9.03 16 8 C 0.51 9.77 7.80 -11.59 -0.09 9.68 16 9 O -0.53 -10.71 13.40 5.49 0.07 -10.64 16 10 N -0.57 -11.74 3.33 -171.00 -0.57 -12.30 16 11 C 0.11 2.07 5.50 -3.05 -0.02 2.05 16 12 C -0.12 -2.42 6.13 -24.89 -0.15 -2.57 16 13 C 0.25 5.88 0.87 -89.61 -0.08 5.80 16 14 O -0.58 -14.53 13.16 -35.23 -0.46 -15.00 16 15 C -0.54 -13.60 8.27 -34.44 -0.28 -13.89 16 16 H 0.07 1.70 7.79 -52.48 -0.41 1.29 16 17 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 18 N -0.89 -23.06 10.69 55.43 0.59 -22.46 16 19 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 C 0.09 2.13 5.38 -2.52 -0.01 2.11 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 26 H 0.11 1.51 5.36 -51.93 -0.28 1.24 16 27 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.10 1.12 7.37 -51.93 -0.38 0.74 16 29 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.07 7.84 -51.93 -0.41 0.67 16 32 H 0.07 1.40 7.44 -51.93 -0.39 1.02 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.38 9.70 7.56 45.56 0.34 10.04 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 38 H 0.07 1.60 8.03 -51.93 -0.42 1.18 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -28.07 319.34 -5.36 -33.42 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.40 Total: 10.81 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 0.02 Total: 16.05 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.50 Total: -42.91 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.31 Total: -34.67 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.07 -5.36 -33.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326268344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.676 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds