Wall clock time and date at job start Tue Mar 31 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00613 * 2 1 4 4 C 1.52993 * 109.47088 * 270.00151 * 3 2 1 5 5 F 1.39899 * 109.47362 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99889 * 179.97438 * 2 1 3 7 7 O 1.21348 * 120.00324 * 183.65590 * 6 2 1 8 8 C 1.49453 * 119.99971 * 3.38348 * 6 2 1 9 9 O 1.21353 * 120.00031 * 354.43011 * 8 6 2 10 10 N 1.34769 * 120.00333 * 174.43278 * 8 6 2 11 11 C 1.47023 * 125.64567 * 359.68772 * 10 8 6 12 12 C 1.54341 * 107.26483 * 178.85388 * 11 10 8 13 13 C 1.55157 * 103.02105 * 338.14027 * 12 11 10 14 14 O 1.42900 * 111.00661 * 277.23601 * 13 12 11 15 15 C 1.50700 * 111.03855 * 153.39634 * 13 12 11 16 16 H 1.08003 * 119.99448 * 6.33277 * 15 13 12 17 17 C 1.37875 * 120.00224 * 186.33517 * 15 13 12 18 18 N 1.31517 * 119.99661 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00081 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46992 * 89.99748 * 19 17 15 21 21 H 1.48499 * 109.47093 * 209.99481 * 19 17 15 22 22 H 1.48503 * 109.47192 * 330.00089 * 19 17 15 23 23 C 1.47429 * 125.65363 * 180.02562 * 10 8 6 24 24 H 1.08999 * 109.47408 * 264.00864 * 1 2 3 25 25 H 1.08997 * 109.46454 * 24.00825 * 1 2 3 26 26 H 1.08999 * 109.46978 * 144.00624 * 1 2 3 27 27 H 1.09001 * 109.46534 * 29.99817 * 3 2 1 28 28 H 1.09000 * 109.47626 * 149.99357 * 3 2 1 29 29 H 1.09010 * 109.46987 * 299.99534 * 4 3 2 30 30 H 1.09000 * 109.47535 * 59.99151 * 4 3 2 31 31 H 1.08999 * 109.88644 * 298.39935 * 11 10 8 32 32 H 1.09000 * 109.88591 * 59.56832 * 11 10 8 33 33 H 1.09002 * 110.84587 * 219.67775 * 12 11 10 34 34 H 1.08995 * 110.51924 * 96.45477 * 12 11 10 35 35 H 0.96697 * 113.99964 * 173.65059 * 14 13 12 36 36 H 0.96999 * 119.99585 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.35808 * 322.92473 * 23 10 8 38 38 H 1.08997 * 110.37025 * 85.13602 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1977 1.2686 0.0000 4 6 2.4526 1.7103 -1.4424 5 9 3.1518 2.9221 -1.4425 6 6 2.1389 -1.1672 0.0005 7 8 3.3505 -1.1684 0.0675 8 6 1.3936 -2.4604 -0.0753 9 8 0.1807 -2.4650 -0.0353 10 7 2.0683 -3.6216 -0.1880 11 6 3.5306 -3.7599 -0.2538 12 6 3.8442 -5.2681 -0.3492 13 6 2.5650 -5.9285 0.2296 14 8 2.6064 -5.9608 1.6576 15 6 2.3683 -7.3123 -0.3337 16 1 3.1279 -7.7520 -0.9631 17 6 1.2188 -8.0170 -0.0455 18 7 0.2942 -7.4817 0.7214 19 14 0.9748 -9.7321 -0.7443 20 1 1.5296 -10.7349 0.2002 21 1 -0.4753 -9.9853 -0.9396 22 1 1.6763 -9.8396 -2.0488 23 6 1.4624 -4.9629 -0.2727 24 1 -0.3634 -0.1073 1.0220 25 1 -0.3632 0.9388 -0.4181 26 1 -0.3633 -0.8315 -0.6040 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5139 29 1 3.0418 0.9505 -1.9563 30 1 1.5003 1.8406 -1.9564 31 1 3.9126 -3.2434 -1.1343 32 1 3.9831 -3.3454 0.6471 33 1 4.7158 -5.5220 0.2540 34 1 3.9938 -5.5622 -1.3880 35 1 1.7890 -6.2749 2.0678 36 1 -0.5147 -7.9773 0.9238 37 1 0.5838 -5.0234 0.3697 38 1 1.1942 -5.1937 -1.3036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326268344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:46 Heat of formation + Delta-G solvation = -170.170208 kcal Electronic energy + Delta-G solvation = -23813.631664 eV Core-core repulsion = 19991.524391 eV Total energy + Delta-G solvation = -3822.107273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.68463 -41.99302 -40.14355 -38.93846 -37.25132 -35.93049 -34.24181 -31.96353 -31.55857 -29.68997 -28.15207 -27.36309 -25.71779 -24.27204 -22.57148 -21.51356 -20.34786 -19.14111 -18.37432 -18.26623 -17.62999 -17.22456 -17.13257 -16.89272 -16.59330 -16.23334 -16.18274 -15.56292 -15.11357 -14.81735 -14.67506 -14.54923 -14.08135 -13.96679 -13.68835 -13.52072 -13.39772 -13.27838 -12.83733 -12.65746 -12.56327 -12.40255 -12.26051 -12.11533 -12.08106 -11.77964 -11.20743 -10.70293 -10.48317 -10.30848 -10.01495 -9.59173 -8.25184 -6.41930 0.28466 1.14972 1.44257 1.46765 1.55799 2.03404 2.29135 2.41033 3.00874 3.09195 3.59721 3.73055 3.76912 3.98760 4.04871 4.14214 4.20304 4.31035 4.37239 4.44076 4.63999 4.66219 4.72758 4.84392 4.93759 5.03372 5.06745 5.16141 5.30195 5.34686 5.43287 5.74521 5.80339 6.04961 6.28571 6.53254 6.66804 6.87429 7.26875 7.35074 8.80474 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.003871 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.486948 B = 7232.339319 C = 7590.945877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.580 5.580 3 C 0.083 3.917 4 C 0.051 3.949 5 F -0.220 7.220 6 C 0.511 3.489 7 O -0.530 6.530 8 C 0.502 3.498 9 O -0.545 6.545 10 N -0.583 5.583 11 C 0.119 3.881 12 C -0.115 4.115 13 C 0.232 3.768 14 O -0.588 6.588 15 C -0.556 4.556 16 H 0.069 0.931 17 C 0.030 3.970 18 N -0.914 5.914 19 Si 0.964 3.036 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.109 3.891 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.374 0.626 36 H 0.270 0.730 37 H 0.059 0.941 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 15.288 -3.679 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.314 5.314 3 C -0.040 4.040 4 C -0.005 4.005 5 F -0.201 7.201 6 C 0.294 3.706 7 O -0.406 6.406 8 C 0.285 3.715 9 O -0.425 6.425 10 N -0.315 5.315 11 C -0.003 4.003 12 C -0.153 4.153 13 C 0.192 3.808 14 O -0.396 6.396 15 C -0.594 4.594 16 H 0.087 0.913 17 C -0.172 4.172 18 N -0.553 5.553 19 Si 0.790 3.210 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.013 4.013 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.143 0.857 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.223 0.777 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.337 15.596 -3.644 16.072 hybrid contribution -0.978 -1.273 0.016 1.606 sum 0.358 14.323 -3.628 14.779 Atomic orbital electron populations 1.22518 0.75897 1.05492 1.03828 1.47608 1.09183 1.04207 1.70386 1.22246 0.99569 0.84629 0.97529 1.22337 0.97821 0.82183 0.98136 1.92756 1.81819 1.47933 1.97635 1.19986 0.87172 0.85317 0.78148 1.90729 1.13902 1.87226 1.48777 1.20096 0.87257 0.84879 0.79219 1.90633 1.13893 1.86525 1.51491 1.48728 1.09598 1.06166 1.67045 1.22153 0.78570 0.97259 1.02367 1.22720 0.98253 0.92411 1.01934 1.19879 0.90271 0.91870 0.78815 1.86130 1.42414 1.89294 1.21722 1.21755 1.04579 1.00932 1.32164 0.91271 1.25785 0.95038 1.01875 0.94454 1.69816 1.09096 1.39189 1.37174 0.85456 0.77145 0.79454 0.78981 1.20294 1.20969 1.18990 1.23030 0.98811 0.79141 1.00302 0.92057 0.87480 0.89335 0.85661 0.89586 0.91398 0.87986 0.89838 0.91314 0.89782 0.88919 0.77711 0.92024 0.92203 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 9.55 127.77 1.22 2.49 16 2 N -0.58 -13.59 2.87 -848.36 -2.44 -16.03 16 3 C 0.08 1.45 5.86 86.38 0.51 1.95 16 4 C 0.05 0.83 7.88 71.98 0.57 1.40 16 5 F -0.22 -4.32 17.36 44.97 0.78 -3.54 16 6 C 0.51 16.29 7.69 87.27 0.67 16.97 16 7 O -0.53 -18.22 13.72 -3.24 -0.04 -18.26 16 8 C 0.50 19.26 7.80 87.27 0.68 19.95 16 9 O -0.55 -22.22 13.40 -3.26 -0.04 -22.26 16 10 N -0.58 -24.06 3.33 -813.29 -2.70 -26.76 16 11 C 0.12 4.39 5.50 86.73 0.48 4.86 16 12 C -0.12 -4.53 6.13 31.79 0.19 -4.34 16 13 C 0.23 11.10 0.87 -10.14 -0.01 11.09 16 14 O -0.59 -30.03 13.16 -148.98 -1.96 -31.99 16 15 C -0.56 -28.31 8.27 25.60 0.21 -28.10 16 16 H 0.07 3.42 7.79 -2.91 -0.02 3.40 16 17 C 0.03 1.51 5.29 84.65 0.45 1.96 16 18 N -0.91 -48.08 10.69 21.45 0.23 -47.85 16 19 Si 0.96 40.66 29.54 68.60 2.03 42.68 16 20 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 C 0.11 5.15 5.38 86.86 0.47 5.61 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.11 1.22 8.03 -2.39 -0.02 1.20 16 26 H 0.09 2.28 5.36 -2.46 -0.01 2.27 16 27 H 0.13 1.43 8.07 -2.39 -0.02 1.41 16 28 H 0.09 1.78 7.37 -2.39 -0.02 1.77 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.74 7.84 -2.39 -0.02 2.72 16 32 H 0.07 2.60 7.44 -2.39 -0.02 2.58 16 33 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.09 3.33 8.03 -2.39 -0.02 3.32 16 35 H 0.37 19.73 7.56 -74.06 -0.56 19.17 16 36 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 37 H 0.06 3.18 7.33 -2.39 -0.02 3.16 16 38 H 0.06 2.77 8.03 -2.39 -0.02 2.75 16 Total: -1.00 -60.76 319.34 1.81 -58.95 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.53 Total: 31.24 kcal Atomic # 6 Polarization: 28.40 SS G_CDS: 5.44 Total: 33.84 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -4.91 Total: -90.65 kcal Atomic # 8 Polarization: -70.47 SS G_CDS: -2.05 Total: -72.52 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Total: -60.76 1.81 -58.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326268344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.222 kcal (2) G-P(sol) polarization free energy of solvation -60.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds