Wall clock time and date at job start Tue Mar 31 2020 02:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.40669 * 2 1 4 4 C 1.45392 * 109.40714 * 119.84517 * 2 1 3 5 5 N 1.46833 * 115.63793 * 183.61873 * 4 2 1 6 6 C 1.46902 * 110.99535 * 142.13564 * 5 4 2 7 7 C 1.50699 * 109.46699 * 170.00161 * 6 5 4 8 8 O 1.21283 * 120.00485 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99618 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99727 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99936 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00027 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00031 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.46898 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46900 * 119.99980 * 15 13 11 18 18 H 1.48496 * 109.46828 * 239.99890 * 15 13 11 19 19 C 1.45582 * 105.37970 * 262.38185 * 5 4 2 20 20 C 1.54638 * 108.47482 * 107.72813 * 19 5 4 21 21 S 1.82419 * 110.54017 * 321.26091 * 20 19 5 22 22 O 1.42108 * 109.46643 * 200.83051 * 21 20 19 23 23 C 1.55291 * 109.40553 * 240.15494 * 2 1 3 24 24 H 1.09005 * 109.46917 * 300.00039 * 1 2 3 25 25 H 1.09001 * 109.47204 * 59.99912 * 1 2 3 26 26 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.08994 * 108.24917 * 305.22125 * 4 2 1 28 28 H 1.08996 * 108.24846 * 62.21967 * 4 2 1 29 29 H 1.09000 * 109.47225 * 290.00049 * 6 5 4 30 30 H 1.08996 * 109.47162 * 50.00314 * 6 5 4 31 31 H 0.96997 * 120.00079 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.47182 * 300.00226 * 10 9 7 33 33 H 1.09001 * 109.46915 * 59.99991 * 10 9 7 34 34 H 0.96997 * 120.00500 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.63278 * 227.42245 * 19 5 4 36 36 H 1.09000 * 109.63673 * 347.82562 * 19 5 4 37 37 H 1.08997 * 109.26572 * 81.53792 * 20 19 5 38 38 H 1.09001 * 109.26083 * 201.02168 * 20 19 5 39 39 H 1.08992 * 109.42830 * 288.80342 * 23 2 1 40 40 H 1.08998 * 109.42730 * 48.65011 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0131 -0.6824 1.1894 5 7 3.4703 -0.6897 1.3700 6 6 3.8259 -0.5335 2.7868 7 6 5.3001 -0.7897 2.9657 8 8 5.9871 -1.0739 2.0074 9 7 5.8555 -0.7020 4.1907 10 6 7.2886 -0.9515 4.3648 11 6 7.6534 -0.7912 5.8181 12 1 6.8938 -0.5300 6.5399 13 6 8.9571 -0.9780 6.2263 14 7 9.8823 -1.2956 5.3472 15 14 9.4092 -0.7800 8.0279 16 1 8.1960 -0.4234 8.8064 17 1 9.9686 -2.0563 8.5410 18 1 10.4224 0.2965 8.1685 19 6 3.9163 -1.9779 0.8590 20 6 4.6486 -1.7459 -0.4830 21 16 3.8073 -0.4522 -1.4559 22 8 4.1662 -0.5806 -2.8249 23 6 2.0460 -0.7289 -1.2704 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.5635 -0.2079 2.0616 28 1 1.6715 -1.7168 1.1519 29 1 3.5913 0.4805 3.1106 30 1 3.2581 -1.2464 3.3846 31 1 5.3062 -0.4743 4.9571 32 1 7.5227 -1.9658 4.0415 33 1 7.8567 -0.2393 3.7664 34 1 10.7994 -1.4274 5.6343 35 1 4.5982 -2.4391 1.5735 36 1 3.0553 -2.6278 0.7024 37 1 5.6745 -1.4361 -0.2840 38 1 4.6577 -2.6749 -1.0530 39 1 1.8540 -1.7978 -1.1783 40 1 1.5259 -0.3421 -2.1468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326379310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:13 Heat of formation + Delta-G solvation = -57.759870 kcal Electronic energy + Delta-G solvation = -21367.318169 eV Core-core repulsion = 18116.298549 eV Total energy + Delta-G solvation = -3251.019619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.89937 -38.06271 -35.42716 -34.97071 -34.07613 -32.42120 -30.94177 -28.40874 -27.63626 -26.71692 -24.75456 -22.79619 -21.72510 -20.56820 -19.71695 -17.32614 -17.12235 -16.28198 -16.23914 -15.67942 -15.27471 -14.92431 -14.84726 -14.69322 -14.14076 -13.90561 -13.73380 -13.22408 -13.03904 -12.83261 -12.64854 -12.37914 -12.23175 -11.97493 -11.72751 -11.69852 -11.31876 -11.11850 -11.00229 -10.97912 -10.89857 -10.48485 -10.33653 -9.84485 -9.41598 -9.00811 -8.76662 -8.69537 -7.91955 -7.77140 -6.20182 -4.27239 1.60620 2.92009 3.21058 3.28031 3.28711 3.30954 3.53034 3.94757 4.16063 4.35404 4.38964 4.73314 4.88115 4.98605 5.11859 5.16170 5.18061 5.23125 5.33095 5.42448 5.45889 5.51559 5.53697 5.62428 5.67287 5.83282 5.89963 5.94825 6.04115 6.35133 6.82041 6.85586 7.27024 7.38766 7.47814 7.62745 7.93373 8.57008 8.74135 9.04361 9.39704 10.89912 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.003441 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.007208 B = 8134.716286 C = 8836.470889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 H 0.094 0.906 4 C 0.033 3.967 5 N -0.501 5.501 6 C 0.031 3.969 7 C 0.495 3.505 8 O -0.538 6.538 9 N -0.712 5.712 10 C 0.251 3.749 11 C -0.544 4.544 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.065 3.935 20 C -0.411 4.411 21 S 1.259 4.741 22 O -0.877 6.877 23 C -0.456 4.456 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.390 0.610 32 H 0.026 0.974 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.135 0.865 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.455 3.178 -5.560 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 H 0.112 0.888 4 C -0.095 4.095 5 N -0.225 5.225 6 C -0.100 4.100 7 C 0.279 3.721 8 O -0.416 6.416 9 N -0.361 5.361 10 C 0.130 3.870 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.064 4.064 20 C -0.550 4.550 21 S 1.459 4.541 22 O -0.872 6.872 23 C -0.592 4.592 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.223 0.777 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.153 0.847 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.056 4.018 -7.073 19.804 hybrid contribution -0.799 -2.687 1.075 3.002 sum -18.855 1.331 -5.998 19.831 Atomic orbital electron populations 1.21830 0.94269 1.01896 1.02145 1.19568 0.95317 1.00584 0.91502 0.88823 1.21224 0.88407 1.00733 0.99170 1.62823 1.10508 1.32685 1.16478 1.22236 0.95065 1.03564 0.89172 1.20266 0.89135 0.78673 0.84028 1.90646 1.63459 1.48254 1.39274 1.46471 1.13058 1.68771 1.07793 1.19103 0.74096 0.97049 0.96760 1.21256 0.94564 1.49681 0.92702 0.91862 1.24953 0.96155 0.94703 0.98210 1.69977 1.02079 1.46255 1.33895 0.86372 0.78577 0.77860 0.84165 1.19634 1.20860 1.20766 1.22327 0.98443 0.89568 0.96073 1.27903 1.10960 1.11820 1.04272 1.71074 0.84641 1.08597 0.89818 1.92970 1.78735 1.82678 1.32821 1.28001 1.21909 1.05599 1.03716 0.92074 0.92200 0.92890 0.90984 0.93478 0.87421 0.91981 0.77729 0.95651 0.95341 0.92478 0.89200 0.93686 0.84731 0.90957 0.89909 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.09 37.16 0.34 -0.51 16 2 C -0.05 -0.36 2.64 -92.98 -0.25 -0.61 16 3 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 4 C 0.03 0.26 3.96 -7.44 -0.03 0.23 16 5 N -0.50 -5.40 3.89 -240.68 -0.94 -6.33 16 6 C 0.03 0.34 5.28 -4.98 -0.03 0.31 16 7 C 0.49 8.38 7.10 -10.98 -0.08 8.30 16 8 O -0.54 -11.01 12.66 5.55 0.07 -10.94 16 9 N -0.71 -13.33 5.55 -61.47 -0.34 -13.67 16 10 C 0.25 6.24 5.43 -5.19 -0.03 6.21 16 11 C -0.54 -14.09 9.28 -34.44 -0.32 -14.41 16 12 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.88 -25.42 13.29 55.43 0.74 -24.68 16 15 Si 0.90 20.25 29.54 -169.99 -5.02 15.22 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.06 0.82 4.44 -3.67 -0.02 0.80 16 20 C -0.41 -5.71 6.64 38.02 0.25 -5.46 16 21 S 1.26 15.79 12.54 -107.50 -1.35 14.45 16 22 O -0.88 -16.34 18.14 -35.23 -0.64 -16.97 16 23 C -0.46 -4.34 5.26 38.37 0.20 -4.14 16 24 H 0.06 0.30 8.13 -51.93 -0.42 -0.13 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.45 7.51 -51.93 -0.39 0.06 16 28 H 0.05 0.37 6.45 -51.93 -0.33 0.04 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.39 6.14 8.32 -40.82 -0.34 5.80 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.09 1.37 5.50 -51.93 -0.29 1.08 16 36 H 0.05 0.48 6.41 -51.93 -0.33 0.15 16 37 H 0.13 2.19 6.93 -51.93 -0.36 1.83 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 0.80 7.97 -51.77 -0.41 0.39 16 40 H 0.10 0.97 8.11 -51.73 -0.42 0.55 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -34.55 327.78 -8.79 -43.34 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.21 Total: 2.31 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.05 Total: -7.66 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.54 Total: -44.69 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.57 Total: -27.92 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 15.79 SS G_CDS: -1.35 Total: 14.45 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.55 -8.79 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.416 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds