Wall clock time and date at job start Tue Mar 31 2020 02:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.40669 * 2 1 4 4 C 1.45392 * 109.40714 * 119.84517 * 2 1 3 5 5 N 1.46833 * 115.63793 * 183.61873 * 4 2 1 6 6 C 1.46902 * 110.99535 * 142.13564 * 5 4 2 7 7 C 1.50699 * 109.46699 * 170.00161 * 6 5 4 8 8 O 1.21283 * 120.00485 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99618 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99727 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99936 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00027 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00031 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.46898 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46900 * 119.99980 * 15 13 11 18 18 H 1.48496 * 109.46828 * 239.99890 * 15 13 11 19 19 C 1.45582 * 105.37970 * 262.38185 * 5 4 2 20 20 C 1.54638 * 108.47482 * 107.72813 * 19 5 4 21 21 S 1.82419 * 110.54017 * 321.26091 * 20 19 5 22 22 O 1.42108 * 109.46643 * 200.83051 * 21 20 19 23 23 C 1.55291 * 109.40553 * 240.15494 * 2 1 3 24 24 H 1.09005 * 109.46917 * 300.00039 * 1 2 3 25 25 H 1.09001 * 109.47204 * 59.99912 * 1 2 3 26 26 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.08994 * 108.24917 * 305.22125 * 4 2 1 28 28 H 1.08996 * 108.24846 * 62.21967 * 4 2 1 29 29 H 1.09000 * 109.47225 * 290.00049 * 6 5 4 30 30 H 1.08996 * 109.47162 * 50.00314 * 6 5 4 31 31 H 0.96997 * 120.00079 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.47182 * 300.00226 * 10 9 7 33 33 H 1.09001 * 109.46915 * 59.99991 * 10 9 7 34 34 H 0.96997 * 120.00500 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.63278 * 227.42245 * 19 5 4 36 36 H 1.09000 * 109.63673 * 347.82562 * 19 5 4 37 37 H 1.08997 * 109.26572 * 81.53792 * 20 19 5 38 38 H 1.09001 * 109.26083 * 201.02168 * 20 19 5 39 39 H 1.08992 * 109.42830 * 288.80342 * 23 2 1 40 40 H 1.08998 * 109.42730 * 48.65011 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0131 -0.6824 1.1894 5 7 3.4703 -0.6897 1.3700 6 6 3.8259 -0.5335 2.7868 7 6 5.3001 -0.7897 2.9657 8 8 5.9871 -1.0739 2.0074 9 7 5.8555 -0.7020 4.1907 10 6 7.2886 -0.9515 4.3648 11 6 7.6534 -0.7912 5.8181 12 1 6.8938 -0.5300 6.5399 13 6 8.9571 -0.9780 6.2263 14 7 9.8823 -1.2956 5.3472 15 14 9.4092 -0.7800 8.0279 16 1 8.1960 -0.4234 8.8064 17 1 9.9686 -2.0563 8.5410 18 1 10.4224 0.2965 8.1685 19 6 3.9163 -1.9779 0.8590 20 6 4.6486 -1.7459 -0.4830 21 16 3.8073 -0.4522 -1.4559 22 8 4.1662 -0.5806 -2.8249 23 6 2.0460 -0.7289 -1.2704 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.5635 -0.2079 2.0616 28 1 1.6715 -1.7168 1.1519 29 1 3.5913 0.4805 3.1106 30 1 3.2581 -1.2464 3.3846 31 1 5.3062 -0.4743 4.9571 32 1 7.5227 -1.9658 4.0415 33 1 7.8567 -0.2393 3.7664 34 1 10.7994 -1.4274 5.6343 35 1 4.5982 -2.4391 1.5735 36 1 3.0553 -2.6278 0.7024 37 1 5.6745 -1.4361 -0.2840 38 1 4.6577 -2.6749 -1.0530 39 1 1.8540 -1.7978 -1.1783 40 1 1.5259 -0.3421 -2.1468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326379310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:13 Heat of formation + Delta-G solvation = -86.374949 kcal Electronic energy + Delta-G solvation = -21368.559012 eV Core-core repulsion = 18116.298549 eV Total energy + Delta-G solvation = -3252.260462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02055 -39.16984 -36.70475 -36.18341 -35.42943 -34.28815 -32.04920 -29.83351 -28.32123 -28.06882 -25.72949 -24.48816 -22.89003 -21.22735 -21.15796 -18.87804 -18.22431 -17.58071 -17.33868 -16.88157 -16.76757 -16.17604 -16.10075 -15.86743 -15.36259 -14.95770 -14.76134 -14.34997 -14.30697 -14.06730 -13.90021 -13.62764 -13.44899 -13.05851 -12.88587 -12.83273 -12.68889 -12.54974 -12.19543 -12.15803 -11.93826 -11.71295 -11.40083 -11.22978 -10.94651 -10.76084 -10.42826 -9.67304 -9.53207 -8.84266 -8.25338 -6.40885 0.57076 1.46185 1.46610 1.59971 1.92221 1.94392 2.33802 2.53881 2.89816 3.10150 3.10403 3.73031 3.88638 4.04425 4.06552 4.13244 4.35674 4.47284 4.57755 4.62934 4.68125 4.76526 4.80946 4.90970 4.98207 5.03427 5.17938 5.21326 5.31920 5.33477 5.42990 5.54193 5.56784 5.79517 5.91442 5.95726 6.10189 6.72406 7.07071 7.29382 7.66700 8.86772 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.003441 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.007208 B = 8134.716286 C = 8836.470889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 H 0.108 0.892 4 C 0.028 3.972 5 N -0.511 5.511 6 C 0.046 3.954 7 C 0.488 3.512 8 O -0.579 6.579 9 N -0.710 5.710 10 C 0.268 3.732 11 C -0.551 4.551 12 H 0.086 0.914 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.981 3.019 16 H -0.250 1.250 17 H -0.283 1.283 18 H -0.281 1.281 19 C 0.072 3.928 20 C -0.412 4.412 21 S 1.281 4.719 22 O -0.944 6.944 23 C -0.442 4.442 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.145 0.855 30 H 0.095 0.905 31 H 0.409 0.591 32 H -0.017 1.017 33 H -0.013 1.013 34 H 0.267 0.733 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.213 4.299 -3.165 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 H 0.127 0.873 4 C -0.098 4.098 5 N -0.236 5.236 6 C -0.084 4.084 7 C 0.275 3.725 8 O -0.460 6.460 9 N -0.361 5.361 10 C 0.145 3.855 11 C -0.589 4.589 12 H 0.104 0.896 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.805 3.195 16 H -0.173 1.173 17 H -0.209 1.209 18 H -0.207 1.207 19 C -0.058 4.058 20 C -0.550 4.550 21 S 1.483 4.517 22 O -0.940 6.940 23 C -0.581 4.581 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.072 0.928 29 H 0.163 0.837 30 H 0.113 0.887 31 H 0.244 0.756 32 H 0.001 0.999 33 H 0.005 0.995 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.847 5.153 -4.675 22.928 hybrid contribution 0.273 -3.064 0.276 3.088 sum -21.575 2.089 -4.399 22.118 Atomic orbital electron populations 1.21808 0.92432 1.02276 1.03269 1.19692 0.96550 1.00930 0.89513 0.87339 1.21324 0.86051 1.01730 1.00727 1.62759 1.12953 1.31422 1.16424 1.22238 0.89820 1.06495 0.89873 1.21442 0.91820 0.76747 0.82471 1.90655 1.65327 1.49494 1.40512 1.46169 1.10662 1.69616 1.09627 1.18459 0.77608 0.93435 0.96004 1.21688 0.95202 1.48745 0.93226 0.89646 1.26045 0.96211 0.94200 1.03299 1.70146 1.02590 1.47834 1.36616 0.85158 0.78786 0.77534 0.78026 1.17343 1.20875 1.20708 1.22230 0.98431 0.90898 0.94215 1.27862 1.09975 1.11561 1.05637 1.70230 0.86497 1.07621 0.87318 1.92870 1.81346 1.83899 1.35859 1.27875 1.17939 1.06534 1.05789 0.90139 0.92003 0.92912 0.87665 0.92797 0.83722 0.88746 0.75574 0.99873 0.99490 0.92467 0.92306 0.91231 0.87940 0.91992 0.89558 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.09 71.98 0.65 -0.31 16 2 C -0.05 -0.48 2.64 -12.33 -0.03 -0.51 16 3 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 4 C 0.03 0.31 3.96 84.00 0.33 0.64 16 5 N -0.51 -9.59 3.89 -915.38 -3.56 -13.14 16 6 C 0.05 0.85 5.28 85.56 0.45 1.30 16 7 C 0.49 16.35 7.10 87.66 0.62 16.97 16 8 O -0.58 -24.90 12.66 -3.04 -0.04 -24.94 16 9 N -0.71 -26.42 5.55 -466.77 -2.59 -29.01 16 10 C 0.27 13.94 5.43 85.63 0.46 14.40 16 11 C -0.55 -28.66 9.28 25.60 0.24 -28.42 16 12 H 0.09 3.97 7.60 -2.91 -0.02 3.94 16 13 C 0.00 0.09 5.46 84.65 0.46 0.55 16 14 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 15 Si 0.98 41.25 29.54 68.60 2.03 43.28 16 16 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 19 C 0.07 1.75 4.44 87.11 0.39 2.14 16 20 C -0.41 -12.06 6.64 72.54 0.48 -11.58 16 21 S 1.28 32.47 12.54 -56.49 -0.71 31.76 16 22 O -0.94 -36.74 18.14 -148.98 -2.70 -39.44 16 23 C -0.44 -7.39 5.26 72.77 0.38 -7.01 16 24 H 0.08 0.31 8.13 -2.38 -0.02 0.29 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.11 0.57 7.51 -2.39 -0.02 0.55 16 28 H 0.05 0.57 6.45 -2.39 -0.02 0.55 16 29 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.25 8.08 -2.39 -0.02 1.24 16 31 H 0.41 12.01 8.32 -92.71 -0.77 11.24 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 34 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.06 1.82 5.50 -2.39 -0.01 1.81 16 36 H 0.07 1.33 6.41 -2.39 -0.02 1.32 16 37 H 0.10 3.69 6.93 -2.39 -0.02 3.67 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.44 7.97 -2.50 -0.02 1.42 16 40 H 0.11 1.79 8.11 -2.52 -0.02 1.77 16 Total: -1.00 -81.64 327.78 -2.58 -84.22 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.26 Total: 14.34 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.44 Total: -11.82 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -5.86 Total: -97.40 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -2.74 Total: -64.38 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 32.47 SS G_CDS: -0.71 Total: 31.76 kcal Total: -81.64 -2.58 -84.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326379310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.154 kcal (2) G-P(sol) polarization free energy of solvation -81.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds