Wall clock time and date at job start Tue Mar 31 2020 02:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 6 6 H 1.09000 * 111.00258 * 82.56702 * 5 4 2 7 7 N 1.46894 * 111.00860 * 206.42364 * 5 4 2 8 8 C 1.46901 * 111.00172 * 205.00156 * 7 5 4 9 9 C 1.52993 * 109.47202 * 179.97438 * 8 7 5 10 10 O 1.42898 * 109.47334 * 65.00057 * 9 8 7 11 11 C 1.54907 * 101.58028 * 324.49859 * 5 4 2 12 12 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 13 13 C 1.34780 * 125.64274 * 300.45579 * 12 2 1 14 14 O 1.21270 * 120.00380 * 0.02562 * 13 12 2 15 15 C 1.50708 * 119.99384 * 179.97438 * 13 12 2 16 16 S 1.81007 * 109.46762 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99397 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00832 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99393 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99997 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47532 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47345 * 119.99997 * 21 19 17 24 24 H 1.48497 * 109.47393 * 240.00109 * 21 19 17 25 25 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 26 26 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 27 27 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 28 28 H 1.09000 * 110.71809 * 21.13997 * 4 2 1 29 29 H 1.09002 * 110.72272 * 144.23157 * 4 2 1 30 30 H 1.00904 * 110.99713 * 328.95137 * 7 5 4 31 31 H 1.09002 * 109.46992 * 300.00088 * 8 7 5 32 32 H 1.08996 * 109.47438 * 59.99580 * 8 7 5 33 33 H 1.09005 * 109.47088 * 184.99896 * 9 8 7 34 34 H 1.08997 * 109.47234 * 304.99470 * 9 8 7 35 35 H 0.96703 * 114.00101 * 180.02562 * 10 9 8 36 36 H 1.09001 * 110.36979 * 155.84714 * 11 5 4 37 37 H 1.08999 * 110.36689 * 278.06189 * 11 5 4 38 38 H 1.08999 * 109.46840 * 300.00108 * 15 13 12 39 39 H 1.08993 * 109.46953 * 60.00231 * 15 13 12 40 40 H 0.97007 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 2.3519 -2.1685 -0.6954 6 1 1.4452 -2.7727 -0.6642 7 7 3.3966 -2.8309 -1.4876 8 6 3.2809 -4.2924 -1.3944 9 6 4.3828 -4.9456 -2.2310 10 8 5.6580 -4.6307 -1.6684 11 6 2.8568 -1.8508 0.7342 12 7 2.0300 -0.7157 1.1829 13 6 1.7750 -0.3880 2.4652 14 8 1.0780 0.5714 2.7188 15 6 2.3554 -1.2146 3.5838 16 16 1.8349 -0.5265 5.1750 17 6 2.6315 -1.6534 6.2706 18 1 3.2235 -2.4650 5.8742 19 6 2.4988 -1.4973 7.6435 20 7 1.7777 -0.5079 8.1268 21 14 3.3438 -2.6915 8.8051 22 1 4.0883 -3.7061 8.0167 23 1 4.2908 -1.9492 9.6754 24 1 2.3246 -3.3682 9.6468 25 1 -0.3633 -1.0275 0.0182 26 1 -0.3633 0.4980 -0.8990 27 1 -0.3634 0.5296 0.8808 28 1 1.2919 -0.7862 -2.0211 29 1 2.9640 -0.2790 -1.6204 30 1 3.3687 -2.5266 -2.4493 31 1 3.3841 -4.5993 -0.3536 32 1 2.3066 -4.6045 -1.7702 33 1 4.2440 -6.0268 -2.2341 34 1 4.3338 -4.5702 -3.2531 35 1 6.4052 -5.0126 -2.1491 36 1 2.7088 -2.7100 1.3885 37 1 3.9096 -1.5695 0.7110 38 1 2.0000 -2.2416 3.4987 39 1 3.4433 -1.2001 3.5196 40 1 1.6848 -0.3991 9.0862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486099512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:33 Heat of formation + Delta-G solvation = -82.053448 kcal Electronic energy + Delta-G solvation = -20770.898009 eV Core-core repulsion = 17518.824941 eV Total energy + Delta-G solvation = -3252.073068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.06931 -37.98802 -37.06730 -34.93016 -32.39104 -32.12034 -30.63610 -28.69691 -27.42764 -25.89825 -25.43931 -22.71293 -21.94272 -20.78887 -18.98265 -17.85438 -17.66703 -16.66539 -16.39358 -15.44956 -15.26166 -15.23770 -14.76940 -14.44401 -14.21408 -13.82135 -13.61006 -13.31465 -13.11024 -12.92618 -12.81159 -12.53609 -12.41081 -11.94465 -11.67717 -11.45459 -11.23661 -11.07869 -11.03799 -10.96422 -10.71746 -10.69140 -10.32280 -9.76079 -9.29076 -9.03530 -8.76970 -8.40620 -8.17995 -6.45464 -6.17919 -3.87859 2.94485 3.14334 3.24547 3.28833 3.34200 3.58575 3.84097 3.96076 4.23563 4.26508 4.46994 4.76145 4.80098 4.81439 5.04325 5.10480 5.15832 5.17321 5.22080 5.26818 5.38013 5.51228 5.55122 5.60331 5.67167 5.69130 5.77497 5.89442 5.97201 6.08492 6.21670 6.32455 6.59597 6.71357 7.02144 7.37067 7.64125 7.77702 8.39753 8.64992 9.27595 10.89617 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003923 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.306020 B = 7136.066006 C = 8759.997475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.073 3.927 6 H 0.063 0.937 7 N -0.669 5.669 8 C 0.055 3.945 9 C 0.080 3.920 10 O -0.558 6.558 11 C 0.114 3.886 12 N -0.622 5.622 13 C 0.550 3.450 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.062 6.062 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.342 0.658 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.374 0.626 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.085 -7.880 -24.819 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.038 4.038 6 H 0.081 0.919 7 N -0.301 5.301 8 C -0.074 4.074 9 C 0.001 3.999 10 O -0.362 6.362 11 C -0.010 4.010 12 N -0.360 5.360 13 C 0.339 3.661 14 O -0.389 6.389 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.161 0.839 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.220 0.780 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.055 -5.975 -23.258 24.101 hybrid contribution 0.910 -2.474 -0.560 2.695 sum 2.965 -8.448 -23.819 25.446 Atomic orbital electron populations 1.22168 0.94842 1.02166 1.03000 1.21387 0.94629 0.96378 0.84090 0.90698 1.22908 1.02004 0.94844 0.97051 1.22669 0.92591 0.94436 0.94091 0.91931 1.60243 1.48782 1.05292 1.15747 1.22098 0.95502 0.87861 1.01932 1.22152 0.84444 0.97642 0.95634 1.86649 1.15109 1.77701 1.56723 1.22220 0.95694 0.89181 0.93928 1.48548 1.51991 1.30650 1.04820 1.19981 0.80014 0.84756 0.81371 1.90680 1.37475 1.28240 1.82522 1.23515 1.03850 1.02409 0.99915 1.85360 1.67138 1.40316 0.90675 1.22913 1.36389 1.15756 0.93103 0.90891 1.24989 0.95273 0.95996 0.97337 1.70033 1.37518 1.29333 1.13455 0.86118 0.79059 0.80240 0.80090 1.19599 1.20564 1.20598 0.92811 0.92153 0.90551 0.90192 0.89656 0.83869 0.89787 0.93703 0.93311 0.93935 0.77985 0.90881 0.90235 0.89472 0.89276 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.05 37.16 0.34 -1.71 16 2 C 0.14 1.76 3.49 -66.96 -0.23 1.53 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -1.14 5.89 -24.90 -0.15 -1.29 16 5 C 0.07 0.69 3.38 -65.57 -0.22 0.47 16 6 H 0.06 0.59 7.83 -51.93 -0.41 0.19 16 7 N -0.67 -5.64 6.36 -104.47 -0.66 -6.31 16 8 C 0.06 0.42 5.93 -3.83 -0.02 0.40 16 9 C 0.08 0.51 7.32 37.15 0.27 0.78 16 10 O -0.56 -4.74 13.61 -35.23 -0.48 -5.22 16 11 C 0.11 1.45 6.39 -2.53 -0.02 1.43 16 12 N -0.62 -9.62 3.08 -163.02 -0.50 -10.12 16 13 C 0.55 11.12 7.65 -10.98 -0.08 11.03 16 14 O -0.51 -12.15 14.77 5.57 0.08 -12.07 16 15 C -0.15 -3.16 5.16 36.01 0.19 -2.98 16 16 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 17 C -0.53 -15.57 9.50 30.94 0.29 -15.27 16 18 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.58 13.22 55.49 0.73 -25.85 16 21 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.21 6.77 -51.93 -0.35 0.86 16 28 H 0.08 0.55 7.83 -51.93 -0.41 0.15 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.34 2.30 8.44 -39.29 -0.33 1.97 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.37 1.49 9.12 45.56 0.42 1.91 16 36 H 0.07 0.95 7.48 -51.93 -0.39 0.56 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.76 7.85 -51.92 -0.41 1.35 16 39 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -35.98 344.54 -8.25 -44.23 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.65 Total: 0.88 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.27 Total: -3.58 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.43 Total: -42.27 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.40 Total: -17.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.98 -8.25 -44.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486099512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.827 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds