Wall clock time and date at job start Tue Mar 31 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 6 6 H 1.09000 * 111.00258 * 82.56702 * 5 4 2 7 7 N 1.46894 * 111.00860 * 206.42364 * 5 4 2 8 8 C 1.46901 * 111.00172 * 205.00156 * 7 5 4 9 9 C 1.52993 * 109.47202 * 179.97438 * 8 7 5 10 10 O 1.42898 * 109.47334 * 65.00057 * 9 8 7 11 11 C 1.54907 * 101.58028 * 324.49859 * 5 4 2 12 12 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 13 13 C 1.34780 * 125.64274 * 300.45579 * 12 2 1 14 14 O 1.21270 * 120.00380 * 0.02562 * 13 12 2 15 15 C 1.50708 * 119.99384 * 179.97438 * 13 12 2 16 16 S 1.81007 * 109.46762 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99397 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00832 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99393 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99997 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47532 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47345 * 119.99997 * 21 19 17 24 24 H 1.48497 * 109.47393 * 240.00109 * 21 19 17 25 25 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 26 26 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 27 27 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 28 28 H 1.09000 * 110.71809 * 21.13997 * 4 2 1 29 29 H 1.09002 * 110.72272 * 144.23157 * 4 2 1 30 30 H 1.00904 * 110.99713 * 328.95137 * 7 5 4 31 31 H 1.09002 * 109.46992 * 300.00088 * 8 7 5 32 32 H 1.08996 * 109.47438 * 59.99580 * 8 7 5 33 33 H 1.09005 * 109.47088 * 184.99896 * 9 8 7 34 34 H 1.08997 * 109.47234 * 304.99470 * 9 8 7 35 35 H 0.96703 * 114.00101 * 180.02562 * 10 9 8 36 36 H 1.09001 * 110.36979 * 155.84714 * 11 5 4 37 37 H 1.08999 * 110.36689 * 278.06189 * 11 5 4 38 38 H 1.08999 * 109.46840 * 300.00108 * 15 13 12 39 39 H 1.08993 * 109.46953 * 60.00231 * 15 13 12 40 40 H 0.97007 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 2.3519 -2.1685 -0.6954 6 1 1.4452 -2.7727 -0.6642 7 7 3.3966 -2.8309 -1.4876 8 6 3.2809 -4.2924 -1.3944 9 6 4.3828 -4.9456 -2.2310 10 8 5.6580 -4.6307 -1.6684 11 6 2.8568 -1.8508 0.7342 12 7 2.0300 -0.7157 1.1829 13 6 1.7750 -0.3880 2.4652 14 8 1.0780 0.5714 2.7188 15 6 2.3554 -1.2146 3.5838 16 16 1.8349 -0.5265 5.1750 17 6 2.6315 -1.6534 6.2706 18 1 3.2235 -2.4650 5.8742 19 6 2.4988 -1.4973 7.6435 20 7 1.7777 -0.5079 8.1268 21 14 3.3438 -2.6915 8.8051 22 1 4.0883 -3.7061 8.0167 23 1 4.2908 -1.9492 9.6754 24 1 2.3246 -3.3682 9.6468 25 1 -0.3633 -1.0275 0.0182 26 1 -0.3633 0.4980 -0.8990 27 1 -0.3634 0.5296 0.8808 28 1 1.2919 -0.7862 -2.0211 29 1 2.9640 -0.2790 -1.6204 30 1 3.3687 -2.5266 -2.4493 31 1 3.3841 -4.5993 -0.3536 32 1 2.3066 -4.6045 -1.7702 33 1 4.2440 -6.0268 -2.2341 34 1 4.3338 -4.5702 -3.2531 35 1 6.4052 -5.0126 -2.1491 36 1 2.7088 -2.7100 1.3885 37 1 3.9096 -1.5695 0.7110 38 1 2.0000 -2.2416 3.4987 39 1 3.4433 -1.2001 3.5196 40 1 1.6848 -0.3991 9.0862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486099512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:32 Heat of formation + Delta-G solvation = -111.377500 kcal Electronic energy + Delta-G solvation = -20772.169595 eV Core-core repulsion = 17518.824941 eV Total energy + Delta-G solvation = -3253.344654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30011 -39.07792 -37.86540 -35.74566 -34.60924 -33.38624 -31.44401 -30.29039 -28.15923 -27.67943 -26.88310 -23.67820 -22.69426 -21.69913 -20.41075 -19.57750 -18.36834 -18.09956 -17.38555 -16.90767 -16.70302 -16.31563 -16.12572 -15.83400 -15.45825 -14.95370 -14.61868 -14.48055 -14.30746 -13.94811 -13.91803 -13.72492 -13.57270 -13.18413 -13.07095 -12.96129 -12.91581 -12.59477 -12.19834 -12.07613 -11.81455 -11.72531 -11.54573 -11.17446 -10.89865 -10.80539 -10.31743 -9.75099 -9.38177 -8.70311 -8.36733 -6.15601 1.21846 1.40333 1.42910 1.54593 1.56028 2.03946 2.25297 2.97289 3.02142 3.28498 3.43069 3.53296 3.57876 3.87587 4.00954 4.15150 4.20248 4.29204 4.35278 4.36398 4.38631 4.41871 4.61027 4.67578 4.69962 4.76956 4.86028 4.89482 4.98388 5.02680 5.08998 5.28116 5.39668 5.48902 6.01584 6.17961 6.36968 6.51430 7.04266 7.04845 7.11177 8.72964 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003923 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.306020 B = 7136.066006 C = 8759.997475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.066 0.934 4 C -0.112 4.112 5 C 0.086 3.914 6 H 0.070 0.930 7 N -0.675 5.675 8 C 0.052 3.948 9 C 0.079 3.921 10 O -0.588 6.588 11 C 0.105 3.895 12 N -0.612 5.612 13 C 0.547 3.453 14 O -0.559 6.559 15 C -0.121 4.121 16 S -0.145 6.145 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 1.000 3.000 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.271 1.271 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.034 0.966 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.357 0.643 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.391 0.609 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 -9.906 -27.211 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.025 4.025 6 H 0.087 0.913 7 N -0.308 5.308 8 C -0.077 4.077 9 C 0.001 3.999 10 O -0.396 6.396 11 C -0.018 4.018 12 N -0.348 5.348 13 C 0.335 3.665 14 O -0.437 6.437 15 C -0.272 4.272 16 S 0.082 5.918 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.822 3.178 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.196 1.196 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.053 0.947 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.177 0.823 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.044 -8.029 -25.729 27.124 hybrid contribution 0.641 -1.848 0.043 1.957 sum 3.684 -9.877 -25.686 27.765 Atomic orbital electron populations 1.22109 0.94591 1.02221 1.02639 1.21712 0.94945 0.96404 0.84415 0.91619 1.22864 1.03251 0.93389 0.95496 1.22489 0.92853 0.95148 0.92021 0.91263 1.60127 1.48280 1.05862 1.16580 1.22157 0.97121 0.87398 1.01070 1.22243 0.83229 0.98427 0.96024 1.86589 1.16542 1.78387 1.58045 1.22454 0.95120 0.87868 0.96347 1.48482 1.51044 1.31210 1.04024 1.19684 0.79908 0.84172 0.82728 1.90663 1.39571 1.29981 1.83485 1.23314 1.04316 1.02791 0.96770 1.85497 1.68398 1.42403 0.95478 1.23218 1.36683 1.15902 0.93775 0.90216 1.26135 0.95741 0.97928 0.99192 1.70186 1.38960 1.31384 1.14137 0.84888 0.77961 0.77642 0.77342 1.18215 1.19725 1.19643 0.92332 0.88887 0.94656 0.87018 0.88623 0.82252 0.92045 0.91830 0.91963 0.92094 0.76051 0.91329 0.90651 0.88053 0.88242 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.05 71.98 0.65 -3.10 16 2 C 0.13 3.06 3.49 45.34 0.16 3.22 16 3 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 4 C -0.11 -1.58 5.89 31.78 0.19 -1.40 16 5 C 0.09 1.39 3.38 46.31 0.16 1.54 16 6 H 0.07 1.08 7.83 -2.39 -0.02 1.06 16 7 N -0.67 -9.34 6.36 -484.45 -3.08 -12.42 16 8 C 0.05 0.66 5.93 86.30 0.51 1.17 16 9 C 0.08 0.78 7.32 71.98 0.53 1.31 16 10 O -0.59 -8.85 13.61 -148.98 -2.03 -10.88 16 11 C 0.11 2.54 6.39 86.85 0.55 3.10 16 12 N -0.61 -18.68 3.08 -788.06 -2.43 -21.10 16 13 C 0.55 22.68 7.65 87.66 0.67 23.35 16 14 O -0.56 -27.63 14.77 -3.00 -0.04 -27.67 16 15 C -0.12 -5.33 5.16 71.24 0.37 -4.96 16 16 S -0.14 -8.44 20.57 -56.49 -1.16 -9.60 16 17 C -0.55 -32.52 9.50 67.96 0.65 -31.87 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.87 5.49 84.86 0.47 1.33 16 20 N -0.91 -57.01 13.22 21.65 0.29 -56.72 16 21 Si 1.00 44.71 29.55 68.60 2.03 46.74 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.03 1.14 6.77 -2.38 -0.02 1.12 16 28 H 0.11 0.98 7.83 -2.39 -0.02 0.96 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.36 3.37 8.44 -89.69 -0.76 2.61 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.57 8.09 -2.39 -0.02 0.55 16 33 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.39 2.41 9.12 -74.05 -0.68 1.73 16 36 H 0.07 1.72 7.48 -2.39 -0.02 1.70 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.10 4.13 7.85 -2.40 -0.02 4.12 16 39 H 0.10 4.14 8.14 -2.40 -0.02 4.12 16 40 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -81.40 344.54 -1.92 -83.32 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.39 Total: 14.67 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.90 Total: -6.31 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -5.22 Total: -90.25 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -2.07 Total: -38.56 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -81.40 -1.92 -83.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486099512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.059 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds