Wall clock time and date at job start Tue Mar 31 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99858 * 2 1 4 4 O 1.21279 * 120.00166 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99762 * 0.02562 * 3 2 1 6 6 S 1.81003 * 109.46853 * 179.97438 * 5 3 2 7 7 C 1.76196 * 99.99846 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99637 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00513 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99570 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46946 * 90.00549 * 11 9 7 13 13 H 1.48504 * 109.46826 * 210.00017 * 11 9 7 14 14 H 1.48496 * 109.47486 * 329.99998 * 11 9 7 15 15 C 1.46496 * 119.99884 * 180.02562 * 2 1 3 16 16 C 1.53773 * 113.62044 * 37.49434 * 15 2 1 17 17 C 1.53780 * 87.08355 * 220.01876 * 16 15 2 18 18 N 1.46902 * 113.61358 * 139.98138 * 17 16 15 19 19 C 1.46898 * 111.00415 * 107.50388 * 18 17 16 20 20 C 1.52995 * 109.47419 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47046 * 64.99756 * 20 19 18 22 22 C 1.53778 * 87.07990 * 25.43274 * 17 16 15 23 23 H 1.08999 * 109.47441 * 89.99653 * 1 2 3 24 24 H 1.09005 * 109.47121 * 209.99861 * 1 2 3 25 25 H 1.08997 * 109.47160 * 329.99513 * 1 2 3 26 26 H 1.09000 * 109.47318 * 299.99141 * 5 3 2 27 27 H 1.09000 * 109.47161 * 59.99772 * 5 3 2 28 28 H 0.96995 * 120.00407 * 180.02562 * 10 9 7 29 29 H 1.09003 * 112.84932 * 168.80095 * 15 2 1 30 30 H 1.09010 * 113.61067 * 334.56814 * 16 15 2 31 31 H 1.09006 * 113.61718 * 105.46765 * 16 15 2 32 32 H 1.08993 * 113.61155 * 270.88001 * 17 16 15 33 33 H 1.00899 * 111.00168 * 343.54428 * 18 17 16 34 34 H 1.09008 * 109.46531 * 299.99878 * 19 18 17 35 35 H 1.08996 * 109.46949 * 59.99005 * 19 18 17 36 36 H 1.09000 * 109.47140 * 184.99938 * 20 19 18 37 37 H 1.08998 * 109.46673 * 304.99889 * 20 19 18 38 38 H 0.96705 * 113.99577 * 180.02562 * 21 20 19 39 39 H 1.09003 * 113.61024 * 220.01738 * 22 17 16 40 40 H 1.08999 * 113.61667 * 89.11763 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4413 5.2082 0.0010 8 1 0.3761 5.0304 0.0002 9 6 1.9281 6.5081 0.0009 10 7 3.2264 6.7248 0.0003 11 14 0.7405 7.9500 0.0000 12 1 0.4254 8.3326 1.3999 13 1 1.3621 9.1027 -0.7002 14 1 -0.5098 7.5612 -0.7004 15 6 2.1975 -1.2687 -0.0006 16 6 1.5375 -2.3608 -0.8586 17 6 1.9131 -3.3526 0.2550 18 7 0.8690 -4.3478 0.5334 19 6 1.2586 -5.6734 0.0346 20 6 0.1491 -6.6807 0.3429 21 8 -1.0276 -6.3321 -0.3892 22 6 1.8954 -2.1549 1.2194 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 0.7584 2.5303 -0.8892 27 1 0.7589 2.5298 0.8908 28 1 3.5666 7.6331 0.0006 29 1 3.2625 -1.1425 -0.1956 30 1 0.4624 -2.2291 -0.9817 31 1 2.0528 -2.5467 -1.8010 32 1 2.9001 -3.7972 0.1289 33 1 -0.0168 -4.0610 0.1445 34 1 1.4161 -5.6241 -1.0430 35 1 2.1809 -5.9885 0.5224 36 1 0.4747 -7.6798 0.0531 37 1 -0.0693 -6.6651 1.4106 38 1 -1.7739 -6.9291 -0.2415 39 1 2.6999 -2.1747 1.9547 40 1 0.9184 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677379239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:32 Heat of formation + Delta-G solvation = -89.572262 kcal Electronic energy + Delta-G solvation = -20311.875651 eV Core-core repulsion = 17059.476543 eV Total energy + Delta-G solvation = -3252.399108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40596 -39.62146 -37.97832 -36.07961 -34.58952 -34.29663 -30.85498 -29.12312 -27.86506 -27.67418 -26.65688 -24.38191 -22.79181 -21.10838 -20.11026 -19.57864 -18.47358 -18.20767 -17.28589 -16.90269 -16.88284 -16.72897 -16.16134 -15.89875 -15.29691 -15.04676 -14.64199 -14.49977 -14.38871 -14.07706 -13.69316 -13.38057 -13.32038 -13.20435 -13.11999 -12.93016 -12.88121 -12.65509 -12.39265 -12.02612 -11.90879 -11.71767 -11.47234 -11.14503 -10.90353 -10.81896 -10.27562 -9.63874 -9.30505 -8.68309 -8.34811 -6.13544 1.25533 1.42605 1.45884 1.55226 1.56764 2.11511 2.27329 2.99129 3.18131 3.25544 3.48342 3.52250 3.66989 3.76781 3.93563 3.96081 4.19019 4.23341 4.29647 4.42267 4.46149 4.48371 4.64032 4.65385 4.72805 4.74997 4.85331 4.92274 4.94273 5.02784 5.07505 5.20955 5.41277 5.62752 6.08347 6.19492 6.29524 6.46076 6.93085 7.06085 7.14012 8.74534 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.045928 B = 0.002609 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.501914 B =10728.939340 C =11161.260972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.598 5.598 3 C 0.529 3.471 4 O -0.568 6.568 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.257 1.257 15 C 0.109 3.891 16 C -0.162 4.162 17 C 0.081 3.919 18 N -0.675 5.675 19 C 0.053 3.947 20 C 0.077 3.923 21 O -0.596 6.596 22 C -0.131 4.131 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.271 0.729 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.350 0.650 34 H 0.031 0.969 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.397 0.603 39 H 0.066 0.934 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 -27.368 0.376 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C 0.317 3.683 4 O -0.447 6.447 5 C -0.273 4.273 6 S 0.072 5.928 7 C -0.692 4.692 8 H 0.101 0.899 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.822 3.178 12 H -0.192 1.192 13 H -0.203 1.203 14 H -0.181 1.181 15 C 0.005 3.995 16 C -0.202 4.202 17 C -0.030 4.030 18 N -0.306 5.306 19 C -0.076 4.076 20 C -0.001 4.001 21 O -0.405 6.405 22 C -0.171 4.171 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.170 0.830 34 H 0.049 0.951 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.085 0.915 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.816 -26.945 0.808 28.362 hybrid contribution -1.875 0.802 -0.763 2.178 sum -10.691 -26.143 0.044 28.244 Atomic orbital electron populations 1.22048 0.77268 1.04685 1.03241 1.47792 1.08164 1.04337 1.72742 1.20209 0.87329 0.85598 0.75183 1.90661 1.15736 1.87534 1.50761 1.23378 1.02666 0.94963 1.06324 1.85591 1.12803 0.97384 1.97029 1.23185 0.94592 0.92576 1.58889 0.89890 1.26162 0.97649 1.01741 0.93726 1.70187 1.14153 1.22480 1.47997 0.84931 0.77843 0.76220 0.78835 1.19234 1.20291 1.18129 1.22529 0.97028 0.81102 0.98843 1.24090 1.02223 0.95200 0.98655 1.22699 0.96209 0.90264 0.93864 1.60448 1.05316 1.01916 1.62932 1.22140 0.98134 0.89142 0.98176 1.22262 0.85242 0.96985 0.95625 1.86397 1.24481 1.58483 1.71126 1.23494 1.02941 0.94039 0.96599 0.91136 0.88410 0.90435 0.87563 0.87377 0.91986 0.88883 0.88017 0.91028 0.87788 0.82997 0.95053 0.88882 0.91671 0.92517 0.75305 0.91543 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 8.84 127.77 1.13 2.46 16 2 N -0.60 -16.84 3.08 -819.65 -2.53 -19.36 16 3 C 0.53 20.92 7.69 87.66 0.67 21.59 16 4 O -0.57 -27.70 15.34 -3.03 -0.05 -27.75 16 5 C -0.12 -5.06 4.71 71.24 0.34 -4.73 16 6 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 7 C -0.54 -31.54 9.50 67.96 0.65 -30.89 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 C 0.01 0.68 5.49 84.86 0.47 1.15 16 10 N -0.91 -56.71 13.22 21.65 0.29 -56.43 16 11 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 C 0.11 2.68 4.21 45.52 0.19 2.87 16 16 C -0.16 -2.84 7.12 31.12 0.22 -2.62 16 17 C 0.08 1.29 4.18 45.44 0.19 1.48 16 18 N -0.68 -9.73 6.62 -488.87 -3.24 -12.97 16 19 C 0.05 0.64 5.95 86.30 0.51 1.15 16 20 C 0.08 0.72 7.39 71.98 0.53 1.25 16 21 O -0.60 -6.62 13.18 -148.98 -1.96 -8.58 16 22 C -0.13 -2.60 7.42 31.12 0.23 -2.37 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.10 1.37 6.34 -2.38 -0.02 1.35 16 25 H 0.08 1.51 6.44 -2.39 -0.02 1.49 16 26 H 0.11 4.00 8.11 -2.39 -0.02 3.98 16 27 H 0.11 4.05 7.40 -2.40 -0.02 4.03 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.09 2.80 7.23 -2.39 -0.02 2.78 16 30 H 0.10 1.55 6.41 -2.38 -0.02 1.54 16 31 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.10 1.58 7.87 -2.39 -0.02 1.56 16 33 H 0.35 5.15 7.75 -89.69 -0.70 4.46 16 34 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.09 0.95 8.13 -2.39 -0.02 0.93 16 36 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.40 1.08 9.12 -74.05 -0.68 0.41 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.78 6.92 -2.39 -0.02 1.76 16 Total: -1.00 -78.91 342.08 -1.81 -80.72 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -0.31 Total: 17.06 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.13 Total: -8.66 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -5.48 Total: -88.76 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.01 Total: -36.33 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -78.91 -1.81 -80.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677379239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.855 kcal (2) G-P(sol) polarization free energy of solvation -78.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds