Wall clock time and date at job start Tue Mar 31 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99909 * 2 1 4 4 C 1.52995 * 109.47166 * 269.99444 * 3 2 1 5 5 N 1.46500 * 109.47167 * 180.02562 * 4 3 2 6 6 C 1.36941 * 120.00074 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.38805 * 120.00386 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99858 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00429 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47024 * 59.99866 * 10 8 6 12 12 H 1.48499 * 109.47149 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46857 * 300.00061 * 10 8 6 14 14 C 1.34770 * 119.99917 * 179.97438 * 2 1 3 15 15 O 1.21642 * 120.00098 * 184.41926 * 14 2 1 16 16 C 1.47172 * 119.99989 * 4.41872 * 14 2 1 17 17 C 1.38587 * 120.72379 * 311.47747 * 16 14 2 18 18 C 1.38933 * 121.36330 * 180.02562 * 17 16 14 19 19 C 1.35824 * 122.59532 * 0.02562 * 18 17 16 20 20 C 1.40848 * 120.55575 * 0.02562 * 19 18 17 21 21 C 1.38423 * 134.89704 * 179.97438 * 20 19 18 22 22 N 1.33893 * 107.84583 * 180.02562 * 21 20 19 23 23 H 0.97002 * 125.01754 * 180.02562 * 22 21 20 24 24 N 1.39982 * 109.95875 * 0.02562 * 22 21 20 25 25 C 1.31475 * 109.01822 * 359.97438 * 24 22 21 26 26 H 1.08995 * 109.47338 * 272.95872 * 1 2 3 27 27 H 1.09007 * 109.46846 * 32.95472 * 1 2 3 28 28 H 1.08998 * 109.47102 * 152.95173 * 1 2 3 29 29 H 1.08998 * 109.47421 * 29.99746 * 3 2 1 30 30 H 1.09005 * 109.46954 * 149.99528 * 3 2 1 31 31 H 1.08998 * 109.47197 * 300.00439 * 4 3 2 32 32 H 1.09005 * 109.47115 * 60.00183 * 4 3 2 33 33 H 0.96999 * 120.00509 * 359.97438 * 5 4 3 34 34 H 0.97001 * 119.99905 * 179.97438 * 9 8 6 35 35 H 1.07996 * 119.32038 * 0.02898 * 17 16 14 36 36 H 1.07995 * 118.70025 * 180.02562 * 18 17 16 37 37 H 1.07998 * 119.72465 * 180.28196 * 19 18 17 38 38 H 1.08000 * 126.07895 * 0.07249 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4424 5 7 3.1856 2.9787 -1.4425 6 6 3.5277 3.5719 -2.6284 7 1 3.2574 3.1043 -3.5637 8 6 4.2217 4.7740 -2.6285 9 7 4.5507 5.3440 -1.4886 10 14 4.6890 5.5827 -4.2462 11 1 3.4597 5.8782 -5.0251 12 1 5.4195 6.8468 -3.9748 13 1 5.5598 4.6657 -5.0246 14 6 2.1388 -1.1672 0.0005 15 8 3.3525 -1.1687 0.0817 16 6 1.4062 -2.4398 -0.0971 17 6 0.3119 -2.6910 0.7153 18 6 -0.3890 -3.8879 0.6347 19 6 -0.0514 -4.8764 -0.2335 20 6 1.0458 -4.7220 -1.1029 21 6 1.6393 -5.5073 -2.0762 22 7 2.6727 -4.8226 -2.5821 23 1 3.2625 -5.1420 -3.2828 24 7 2.7763 -3.5777 -1.9503 25 6 1.8203 -3.4713 -1.0540 26 1 -0.3634 0.0530 1.0262 27 1 -0.3633 0.8624 -0.5591 28 1 -0.3633 -0.9152 -0.4673 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5139 31 1 3.0416 0.9506 -1.9562 32 1 1.5002 1.8406 -1.9564 33 1 3.4280 3.3989 -0.6025 34 1 5.0360 6.1839 -1.4886 35 1 -0.0026 -1.9408 1.4257 36 1 -1.2356 -4.0381 1.2881 37 1 -0.6317 -5.7868 -0.2602 38 1 1.3242 -6.4961 -2.3751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691421052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:09 Heat of formation + Delta-G solvation = 87.545270 kcal Electronic energy + Delta-G solvation = -21952.622656 eV Core-core repulsion = 18604.752740 eV Total energy + Delta-G solvation = -3347.869916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46574 -39.62092 -37.04694 -35.74968 -34.24723 -32.36311 -31.47528 -30.81524 -29.26864 -27.93999 -26.48523 -24.75745 -23.69231 -22.05300 -22.00766 -20.94001 -19.10239 -18.29227 -17.51082 -17.06417 -16.56915 -15.92630 -15.46890 -15.24023 -14.92504 -14.58267 -14.18356 -13.77156 -13.54013 -13.30170 -13.09252 -12.86849 -12.74677 -12.42252 -12.22960 -11.97536 -11.64870 -11.17087 -10.90846 -10.82385 -10.71971 -10.58890 -10.47972 -10.07905 -9.69996 -9.52624 -9.05561 -8.78946 -8.38015 -7.84674 -6.84694 -5.68402 -2.97162 0.18764 1.57322 2.06903 2.41552 2.90599 3.19250 3.50283 3.53861 3.55755 3.65270 3.98937 4.24014 4.62138 4.68893 4.72565 4.95160 5.06085 5.10665 5.22712 5.34273 5.44969 5.56930 5.66880 5.75842 5.79606 5.94583 6.07780 6.11328 6.14896 6.23809 6.27006 6.54863 6.68457 6.79427 6.86006 7.03825 7.37579 7.61409 7.77497 8.42469 8.50659 9.61008 10.17940 10.53548 11.54639 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.023187 B = 0.003458 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.274586 B = 8094.456423 C = 8856.078530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.109 3.891 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.236 4.236 7 H 0.069 0.931 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.559 3.441 15 O -0.519 6.519 16 C -0.103 4.103 17 C -0.042 4.042 18 C -0.165 4.165 19 C -0.021 4.021 20 C -0.217 4.217 21 C 0.088 3.912 22 N -0.427 5.427 23 H 0.445 0.555 24 N -0.277 5.277 25 C 0.133 3.867 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.462 -25.356 3.520 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C -0.014 4.014 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.346 3.654 15 O -0.394 6.394 16 C -0.109 4.109 17 C -0.065 4.065 18 C -0.185 4.185 19 C -0.041 4.041 20 C -0.227 4.227 21 C -0.069 4.069 22 N -0.127 5.127 23 H 0.290 0.710 24 N -0.103 5.103 25 C -0.025 4.025 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.724 -24.682 2.827 27.912 hybrid contribution -0.083 -0.012 -0.729 0.734 sum -12.807 -24.694 2.098 27.896 Atomic orbital electron populations 1.22018 0.79834 1.03758 1.01550 1.47696 1.06904 1.06036 1.73383 1.21705 0.97586 0.82928 0.99145 1.20911 0.95081 0.89351 0.93268 1.42202 1.67081 1.21640 1.06555 1.19177 1.29315 1.02269 0.85991 0.91299 1.24737 1.01345 0.98067 0.96899 1.69657 1.45116 1.19621 1.23946 0.86236 0.78109 0.78620 0.83054 1.21293 1.21655 1.21283 1.18016 0.87149 0.83198 0.76993 1.90850 1.13346 1.86949 1.48271 1.19797 0.98347 0.93492 0.99300 1.21286 0.91638 0.97296 0.96234 1.20320 1.02226 0.94091 1.01866 1.20244 0.93152 0.98333 0.92365 1.19573 1.02978 0.95786 1.04392 1.22763 0.90241 0.98317 0.95602 1.46515 1.23312 1.12734 1.30103 0.71001 1.77823 1.22103 0.97369 1.12967 1.21514 0.92759 0.93654 0.94584 0.92503 0.90736 0.90635 0.90330 0.89534 0.95928 0.96432 0.78249 0.93486 0.84618 0.85447 0.85663 0.79274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 9.08 59.85 0.54 1.34 16 2 N -0.61 -9.78 2.87 -182.95 -0.53 -10.30 16 3 C 0.11 2.05 5.57 -4.05 -0.02 2.02 16 4 C 0.14 3.27 6.58 -4.04 -0.03 3.24 16 5 N -0.73 -20.10 5.60 -59.91 -0.34 -20.43 16 6 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 7 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 8 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -29.45 13.06 55.49 0.72 -28.73 16 10 Si 0.91 23.42 29.55 -169.99 -5.02 18.40 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 C 0.56 10.09 7.27 -12.64 -0.09 10.00 16 15 O -0.52 -11.76 16.61 5.24 0.09 -11.68 16 16 C -0.10 -1.50 5.08 -102.74 -0.52 -2.02 16 17 C -0.04 -0.43 7.56 -39.20 -0.30 -0.73 16 18 C -0.17 -1.31 9.83 -40.19 -0.39 -1.71 16 19 C -0.02 -0.16 10.02 -39.46 -0.40 -0.56 16 20 C -0.22 -2.24 6.34 -105.21 -0.67 -2.91 16 21 C 0.09 0.64 12.08 -16.58 -0.20 0.44 16 22 N -0.43 -4.03 7.18 30.86 0.22 -3.81 16 23 H 0.45 2.50 8.96 -182.69 -1.64 0.86 16 24 N -0.28 -4.34 12.67 34.35 0.44 -3.91 16 25 C 0.13 1.97 7.46 -80.99 -0.60 1.37 16 26 H 0.06 0.48 7.55 -51.93 -0.39 0.09 16 27 H 0.07 0.82 8.09 -51.92 -0.42 0.40 16 28 H 0.08 0.76 5.67 -51.93 -0.29 0.46 16 29 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 30 H 0.09 1.80 7.36 -51.93 -0.38 1.42 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.38 10.87 7.67 -40.82 -0.31 10.56 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.14 1.11 6.49 -52.49 -0.34 0.77 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.19 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -40.40 327.71 -8.26 -48.66 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.86 Total: 4.14 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.92 Total: 2.72 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: 0.52 Total: -67.18 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -40.40 -8.26 -48.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691421052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.204 kcal (2) G-P(sol) polarization free energy of solvation -40.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds