Wall clock time and date at job start Tue Mar 31 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00188 * 2 1 4 4 C 1.53001 * 109.47082 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47427 * 64.99830 * 4 3 2 6 6 C 1.42895 * 114.00030 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46991 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99991 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47266 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.41683 * 313.20046 * 11 10 9 13 13 C 1.53492 * 114.20723 * 179.97438 * 11 10 9 14 14 N 1.47069 * 87.98838 * 220.34480 * 13 11 10 15 15 C 1.36936 * 136.06301 * 207.07784 * 14 13 11 16 16 H 1.08006 * 119.99418 * 7.84113 * 15 14 13 17 17 C 1.38804 * 120.00237 * 187.83484 * 15 14 13 18 18 N 1.31625 * 119.99842 * 195.05312 * 17 15 14 19 19 Si 1.86804 * 120.00142 * 15.32461 * 17 15 14 20 20 H 1.48501 * 109.47266 * 269.72654 * 19 17 15 21 21 H 1.48499 * 109.46684 * 29.72784 * 19 17 15 22 22 H 1.48499 * 109.47124 * 149.72495 * 19 17 15 23 23 C 1.47077 * 87.88174 * 27.34535 * 14 13 11 24 24 H 1.09000 * 109.47000 * 59.99657 * 1 2 3 25 25 H 1.08994 * 109.47255 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47077 * 300.00421 * 1 2 3 27 27 H 1.08996 * 109.47234 * 59.99999 * 3 2 1 28 28 H 1.08999 * 109.47090 * 299.99636 * 3 2 1 29 29 H 1.08998 * 109.47003 * 304.99387 * 4 3 2 30 30 H 1.09005 * 109.47000 * 185.00164 * 4 3 2 31 31 H 1.09001 * 109.47345 * 60.00363 * 6 5 4 32 32 H 1.08998 * 109.47347 * 300.00158 * 6 5 4 33 33 H 0.96998 * 120.00211 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47277 * 59.99632 * 10 9 7 35 35 H 1.08998 * 109.46987 * 299.99544 * 10 9 7 36 36 H 0.96703 * 113.99756 * 46.79521 * 12 11 10 37 37 H 1.08997 * 113.46930 * 105.57004 * 13 11 10 38 38 H 1.09004 * 113.52079 * 335.13441 * 13 11 10 39 39 H 0.96999 * 120.00088 * 355.18627 * 18 17 15 40 40 H 1.08999 * 113.46528 * 87.43645 * 23 14 13 41 41 H 1.08996 * 113.46472 * 217.87933 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3812 0.4200 -1.3250 7 6 5.7195 -0.2234 -2.6451 8 8 4.8348 -0.5169 -3.4210 9 7 7.0051 -0.4736 -2.9630 10 6 7.3340 -1.0985 -4.2465 11 6 8.8504 -1.2694 -4.3568 12 8 9.5821 -0.0982 -3.9897 13 6 9.3169 -1.9184 -5.6672 14 7 10.2978 -2.6807 -4.8800 15 6 11.5220 -3.2484 -5.1128 16 1 12.0308 -3.0697 -6.0486 17 6 12.1091 -4.0531 -4.1462 18 7 13.3874 -4.3557 -4.2294 19 14 11.0833 -4.7131 -2.7314 20 1 11.1290 -3.7550 -1.5977 21 1 9.6774 -4.8853 -3.1776 22 1 11.6279 -6.0236 -2.2942 23 6 9.3821 -2.5710 -3.7343 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8514 0.5682 0.8410 30 1 3.9786 2.1764 0.0890 31 1 5.7359 -0.2121 -0.5109 32 1 5.8622 1.3961 -1.2631 33 1 7.7127 -0.2392 -2.3423 34 1 6.9799 -0.4655 -5.0601 35 1 6.8526 -2.0744 -4.3094 36 1 9.2857 0.3079 -3.1637 37 1 9.7723 -1.2135 -6.3627 38 1 8.5578 -2.5435 -6.1375 39 1 13.9029 -4.0750 -5.0016 40 1 8.6396 -3.3679 -3.6943 41 1 9.8930 -2.4219 -2.7831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699910026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:16 Heat of formation + Delta-G solvation = -99.529905 kcal Electronic energy + Delta-G solvation = -22878.618396 eV Core-core repulsion = 19183.034621 eV Total energy + Delta-G solvation = -3695.583775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17363 -39.18636 -38.46822 -37.23993 -35.28329 -34.16171 -32.29110 -31.12983 -29.46735 -27.73432 -26.56433 -25.47562 -25.40065 -22.94085 -21.54009 -20.80869 -19.65531 -18.06744 -17.50998 -17.38768 -17.20910 -16.33976 -16.12827 -16.00616 -15.55182 -15.35457 -14.93760 -14.76974 -14.36526 -13.91027 -13.69000 -13.30949 -13.28209 -12.92893 -12.77917 -12.66366 -12.40822 -12.02904 -11.78623 -11.61307 -11.45443 -10.97419 -10.53444 -10.30838 -10.11191 -10.09057 -10.02693 -9.85598 -9.37993 -9.21712 -9.04515 -8.70813 -7.20175 -6.31103 -3.22111 2.49520 2.56626 3.37213 3.39667 3.45711 3.60262 3.65141 4.23795 4.45110 4.57370 4.58807 4.65711 4.75144 4.78329 4.80888 4.88769 4.93276 4.97359 5.04209 5.06045 5.09346 5.31025 5.36201 5.44347 5.53350 5.82201 6.04689 6.11440 6.18731 6.29241 6.34664 6.54174 6.64790 6.81570 7.08687 7.28831 7.84495 8.09248 8.23909 8.97151 9.49773 10.34288 11.19342 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.002886 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.955736 B = 9701.056831 C =10112.835889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.043 3.957 7 C 0.515 3.485 8 O -0.516 6.516 9 N -0.728 5.728 10 C 0.108 3.892 11 C 0.072 3.928 12 O -0.518 6.518 13 C 0.135 3.865 14 N -0.614 5.614 15 C -0.300 4.300 16 H 0.083 0.917 17 C -0.025 4.025 18 N -0.932 5.932 19 Si 1.064 2.936 20 H -0.295 1.295 21 H -0.282 1.282 22 H -0.295 1.295 23 C 0.080 3.920 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.397 0.603 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.362 0.638 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.262 0.738 40 H 0.054 0.946 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.257 13.908 11.019 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.273 6.273 6 C -0.037 4.037 7 C 0.299 3.701 8 O -0.390 6.390 9 N -0.383 5.383 10 C -0.016 4.016 11 C 0.029 3.971 12 O -0.321 6.321 13 C 0.008 3.992 14 N -0.341 5.341 15 C -0.427 4.427 16 H 0.100 0.900 17 C -0.224 4.224 18 N -0.574 5.574 19 Si 0.895 3.105 20 H -0.223 1.223 21 H -0.209 1.209 22 H -0.222 1.222 23 C -0.047 4.047 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.208 0.792 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.262 12.317 11.059 27.742 hybrid contribution -0.016 1.357 -0.371 1.407 sum -22.278 13.674 10.688 28.241 Atomic orbital electron populations 1.22750 0.80989 1.02983 0.99801 1.87985 1.19669 1.27099 1.95351 1.22538 0.92121 0.85736 1.00963 1.22608 0.93775 0.97626 0.87560 1.88085 1.19380 1.82092 1.37734 1.22206 0.84317 1.00947 0.96209 1.20185 0.82593 0.79179 0.88096 1.90748 1.46685 1.50602 1.51008 1.45831 1.07503 1.63928 1.21061 1.21953 0.95474 0.99260 0.84959 1.23266 0.86764 0.86334 1.00732 1.86696 1.60264 1.41219 1.43923 1.22367 0.91858 0.92750 0.92243 1.45912 1.15699 1.65420 1.07060 1.20103 0.90358 1.26845 1.05347 0.89959 1.25772 0.97520 0.97207 1.01903 1.70893 1.05087 1.51083 1.30314 0.83755 0.74828 0.76515 0.75354 1.22264 1.20886 1.22189 1.23431 0.93155 0.93908 0.94167 0.93937 0.89503 0.94249 0.91671 0.92221 0.92064 0.91466 0.89964 0.90159 0.76795 0.90419 0.89852 0.79218 0.92449 0.92869 0.92815 0.92818 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.04 10.67 -40.08 -0.43 -4.46 16 3 C 0.06 0.49 6.32 37.16 0.23 0.72 16 4 C 0.06 0.47 6.32 37.16 0.23 0.70 16 5 O -0.35 -4.16 9.84 -59.73 -0.59 -4.75 16 6 C 0.04 0.39 6.42 36.01 0.23 0.62 16 7 C 0.51 6.56 7.91 -10.99 -0.09 6.47 16 8 O -0.52 -9.08 16.50 -14.36 -0.24 -9.31 16 9 N -0.73 -8.13 5.34 -60.30 -0.32 -8.46 16 10 C 0.11 1.48 5.43 -4.04 -0.02 1.46 16 11 C 0.07 1.20 1.74 -89.97 -0.16 1.05 16 12 O -0.52 -8.52 13.56 -35.23 -0.48 -8.99 16 13 C 0.13 2.67 8.10 -8.50 -0.07 2.60 16 14 N -0.61 -15.23 3.62 -184.56 -0.67 -15.90 16 15 C -0.30 -8.79 11.03 -15.06 -0.17 -8.95 16 16 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 17 C -0.03 -0.75 5.50 -17.43 -0.10 -0.85 16 18 N -0.93 -29.66 13.70 55.49 0.76 -28.90 16 19 Si 1.06 26.60 25.51 -169.99 -4.34 22.27 16 20 H -0.29 -6.99 6.97 56.52 0.39 -6.60 16 21 H -0.28 -6.53 5.65 56.52 0.32 -6.21 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 C 0.08 1.63 5.04 -8.36 -0.04 1.59 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.40 3.26 6.95 -40.82 -0.28 2.97 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 36 H 0.36 4.02 7.21 45.56 0.33 4.35 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 39 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 40 H 0.05 1.07 6.80 -51.93 -0.35 0.72 16 41 H 0.06 1.17 6.24 -51.93 -0.32 0.85 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -39.35 342.84 -5.73 -45.08 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.78 Total: 1.51 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 1.18 Total: 6.75 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.23 Total: -53.25 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.73 Total: -27.52 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -4.34 Total: 22.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -39.35 -5.73 -45.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699910026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.448 kcal (2) G-P(sol) polarization free energy of solvation -39.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds