Wall clock time and date at job start Tue Mar 31 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00188 * 2 1 4 4 C 1.53001 * 109.47082 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47427 * 64.99830 * 4 3 2 6 6 C 1.42895 * 114.00030 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46991 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99991 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47266 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.41683 * 313.20046 * 11 10 9 13 13 C 1.53492 * 114.20723 * 179.97438 * 11 10 9 14 14 N 1.47069 * 87.98838 * 220.34480 * 13 11 10 15 15 C 1.36936 * 136.06301 * 207.07784 * 14 13 11 16 16 H 1.08006 * 119.99418 * 7.84113 * 15 14 13 17 17 C 1.38804 * 120.00237 * 187.83484 * 15 14 13 18 18 N 1.31625 * 119.99842 * 195.05312 * 17 15 14 19 19 Si 1.86804 * 120.00142 * 15.32461 * 17 15 14 20 20 H 1.48501 * 109.47266 * 269.72654 * 19 17 15 21 21 H 1.48499 * 109.46684 * 29.72784 * 19 17 15 22 22 H 1.48499 * 109.47124 * 149.72495 * 19 17 15 23 23 C 1.47077 * 87.88174 * 27.34535 * 14 13 11 24 24 H 1.09000 * 109.47000 * 59.99657 * 1 2 3 25 25 H 1.08994 * 109.47255 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47077 * 300.00421 * 1 2 3 27 27 H 1.08996 * 109.47234 * 59.99999 * 3 2 1 28 28 H 1.08999 * 109.47090 * 299.99636 * 3 2 1 29 29 H 1.08998 * 109.47003 * 304.99387 * 4 3 2 30 30 H 1.09005 * 109.47000 * 185.00164 * 4 3 2 31 31 H 1.09001 * 109.47345 * 60.00363 * 6 5 4 32 32 H 1.08998 * 109.47347 * 300.00158 * 6 5 4 33 33 H 0.96998 * 120.00211 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47277 * 59.99632 * 10 9 7 35 35 H 1.08998 * 109.46987 * 299.99544 * 10 9 7 36 36 H 0.96703 * 113.99756 * 46.79521 * 12 11 10 37 37 H 1.08997 * 113.46930 * 105.57004 * 13 11 10 38 38 H 1.09004 * 113.52079 * 335.13441 * 13 11 10 39 39 H 0.96999 * 120.00088 * 355.18627 * 18 17 15 40 40 H 1.08999 * 113.46528 * 87.43645 * 23 14 13 41 41 H 1.08996 * 113.46472 * 217.87933 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3812 0.4200 -1.3250 7 6 5.7195 -0.2234 -2.6451 8 8 4.8348 -0.5169 -3.4210 9 7 7.0051 -0.4736 -2.9630 10 6 7.3340 -1.0985 -4.2465 11 6 8.8504 -1.2694 -4.3568 12 8 9.5821 -0.0982 -3.9897 13 6 9.3169 -1.9184 -5.6672 14 7 10.2978 -2.6807 -4.8800 15 6 11.5220 -3.2484 -5.1128 16 1 12.0308 -3.0697 -6.0486 17 6 12.1091 -4.0531 -4.1462 18 7 13.3874 -4.3557 -4.2294 19 14 11.0833 -4.7131 -2.7314 20 1 11.1290 -3.7550 -1.5977 21 1 9.6774 -4.8853 -3.1776 22 1 11.6279 -6.0236 -2.2942 23 6 9.3821 -2.5710 -3.7343 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8514 0.5682 0.8410 30 1 3.9786 2.1764 0.0890 31 1 5.7359 -0.2121 -0.5109 32 1 5.8622 1.3961 -1.2631 33 1 7.7127 -0.2392 -2.3423 34 1 6.9799 -0.4655 -5.0601 35 1 6.8526 -2.0744 -4.3094 36 1 9.2857 0.3079 -3.1637 37 1 9.7723 -1.2135 -6.3627 38 1 8.5578 -2.5435 -6.1375 39 1 13.9029 -4.0750 -5.0016 40 1 8.6396 -3.3679 -3.6943 41 1 9.8930 -2.4219 -2.7831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699910026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:15 Heat of formation + Delta-G solvation = -134.636169 kcal Electronic energy + Delta-G solvation = -22880.140718 eV Core-core repulsion = 19183.034621 eV Total energy + Delta-G solvation = -3697.106097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37194 -40.38198 -39.18171 -37.94678 -36.75360 -35.29360 -34.42645 -31.78401 -30.76170 -28.97554 -27.20913 -27.08801 -26.67051 -23.48856 -23.26800 -21.79136 -21.23520 -19.72411 -18.85656 -18.18791 -17.80803 -17.61902 -17.00997 -16.90711 -16.60824 -16.22162 -16.05228 -15.81548 -15.64292 -15.47301 -15.21851 -14.85013 -14.58102 -14.11647 -13.69903 -13.57014 -13.37878 -13.20145 -12.90939 -12.77488 -12.34260 -12.32305 -11.99973 -11.90634 -11.82339 -11.38180 -11.00232 -10.85586 -10.68807 -10.62833 -10.59752 -10.18489 -9.26638 -8.64263 -5.47116 1.37547 1.51584 1.57056 1.66277 1.74337 2.54112 2.88679 2.89774 2.96758 3.00508 3.14565 3.33611 3.75194 3.77108 4.11726 4.24056 4.27014 4.29502 4.36780 4.46675 4.49810 4.54945 4.57938 4.59003 4.61250 4.65259 4.74785 4.79786 4.80708 4.87000 5.04156 5.17329 5.26768 5.93637 6.05624 6.27933 6.46877 6.68190 6.78934 7.19251 7.31506 8.24711 8.87669 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.002886 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.955736 B = 9701.056831 C =10112.835889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.055 3.945 4 C 0.056 3.944 5 O -0.396 6.396 6 C 0.045 3.955 7 C 0.512 3.488 8 O -0.572 6.572 9 N -0.714 5.714 10 C 0.121 3.879 11 C 0.109 3.891 12 O -0.535 6.535 13 C 0.124 3.876 14 N -0.650 5.650 15 C -0.291 4.291 16 H 0.045 0.955 17 C -0.087 4.087 18 N -0.968 5.968 19 Si 1.105 2.895 20 H -0.271 1.271 21 H -0.253 1.253 22 H -0.303 1.303 23 C 0.072 3.928 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.415 0.585 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.387 0.613 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.069 0.931 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.505 15.478 13.427 31.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.021 4.021 4 C -0.020 4.020 5 O -0.316 6.316 6 C -0.034 4.034 7 C 0.300 3.700 8 O -0.450 6.450 9 N -0.371 5.371 10 C -0.004 4.004 11 C 0.065 3.935 12 O -0.342 6.342 13 C -0.002 4.002 14 N -0.378 5.378 15 C -0.418 4.418 16 H 0.063 0.937 17 C -0.279 4.279 18 N -0.613 5.613 19 Si 0.929 3.071 20 H -0.198 1.198 21 H -0.177 1.177 22 H -0.232 1.232 23 C -0.053 4.053 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.253 0.747 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.537 13.959 13.493 31.288 hybrid contribution 0.662 0.988 -1.213 1.699 sum -23.874 14.947 12.280 30.728 Atomic orbital electron populations 1.22885 0.79772 1.03504 1.00830 1.87928 1.21294 1.28995 1.95596 1.22779 0.92450 0.84905 1.01979 1.22864 0.93691 0.99126 0.86305 1.88033 1.20830 1.82942 1.39766 1.22351 0.83783 1.03005 0.94235 1.20926 0.82000 0.78179 0.88922 1.90730 1.48256 1.53046 1.52988 1.45658 1.07917 1.63121 1.20373 1.21635 0.92564 0.99652 0.86541 1.22654 0.88333 0.85064 0.97407 1.86656 1.60937 1.40843 1.45803 1.22662 0.91244 0.92635 0.93668 1.45956 1.15784 1.65580 1.10487 1.19928 0.92408 1.25842 1.03633 0.93745 1.27207 0.97701 0.97823 1.05142 1.71012 1.06532 1.53417 1.30348 0.83285 0.74748 0.75802 0.73221 1.19762 1.17732 1.23151 1.23695 0.92399 0.96285 0.92892 0.93838 0.89365 0.92241 0.88793 0.92943 0.91369 0.88382 0.87409 0.86381 0.74740 0.90044 0.90067 0.76281 0.93356 0.90441 0.94578 0.91336 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.37 10.67 -144.34 -1.54 -9.91 16 3 C 0.06 0.74 6.32 71.98 0.45 1.19 16 4 C 0.06 0.69 6.32 71.98 0.45 1.15 16 5 O -0.40 -8.35 9.84 -125.55 -1.24 -9.59 16 6 C 0.05 0.65 6.42 71.24 0.46 1.10 16 7 C 0.51 11.56 7.91 87.66 0.69 12.25 16 8 O -0.57 -19.31 16.50 16.00 0.26 -19.05 16 9 N -0.71 -13.24 5.34 -463.07 -2.47 -15.72 16 10 C 0.12 2.94 5.43 86.38 0.47 3.41 16 11 C 0.11 3.31 1.74 -10.37 -0.02 3.29 16 12 O -0.54 -15.94 13.56 -148.98 -2.02 -17.96 16 13 C 0.12 4.71 8.10 83.18 0.67 5.39 16 14 N -0.65 -31.67 3.62 -738.30 -2.67 -34.34 16 15 C -0.29 -17.35 11.03 84.03 0.93 -16.42 16 16 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 17 C -0.09 -5.29 5.50 84.86 0.47 -4.83 16 18 N -0.97 -63.58 13.70 21.65 0.30 -63.28 16 19 Si 1.11 52.75 25.51 68.60 1.75 54.50 16 20 H -0.27 -11.82 6.97 99.48 0.69 -11.13 16 21 H -0.25 -10.68 5.65 99.48 0.56 -10.11 16 22 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 23 C 0.07 2.74 5.04 83.27 0.42 3.16 16 24 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.41 4.82 6.95 -92.71 -0.64 4.18 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 2.08 7.89 -2.39 -0.02 2.07 16 36 H 0.39 6.96 7.21 -74.06 -0.53 6.43 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 39 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 40 H 0.07 2.45 6.80 -2.39 -0.02 2.43 16 41 H 0.06 2.12 6.24 -2.39 -0.01 2.10 16 Total: -1.00 -89.39 342.84 -1.72 -91.11 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -0.33 Total: 12.96 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.25 Total: 11.28 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.85 Total: -113.35 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -4.53 Total: -56.51 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 1.75 Total: 54.50 kcal Total: -89.39 -1.72 -91.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699910026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.523 kcal (2) G-P(sol) polarization free energy of solvation -89.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds