Wall clock time and date at job start Tue Mar 31 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46787 * 2 1 4 4 C 1.36036 * 126.35074 * 269.98378 * 3 2 1 5 5 C 1.50700 * 124.94846 * 0.05961 * 4 3 2 6 6 C 1.52998 * 109.47413 * 90.00113 * 5 4 3 7 7 C 1.52995 * 109.47031 * 180.02562 * 6 5 4 8 8 O 1.42899 * 109.46865 * 179.97438 * 7 6 5 9 9 C 1.42906 * 114.00021 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47218 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99717 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99976 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00087 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00068 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47194 * 89.99738 * 14 12 10 16 16 H 1.48493 * 109.47456 * 209.99934 * 14 12 10 17 17 H 1.48505 * 109.47274 * 330.00243 * 14 12 10 18 18 N 1.30106 * 110.10195 * 180.02562 * 4 3 2 19 19 C 1.35787 * 109.64359 * 359.97438 * 18 4 3 20 20 C 1.39734 * 133.60143 * 179.97438 * 19 18 4 21 21 C 1.36605 * 119.88806 * 180.02562 * 20 19 18 22 22 C 1.38776 * 120.66622 * 359.97438 * 21 20 19 23 23 C 1.37851 * 120.45485 * 0.03810 * 22 21 20 24 24 C 1.38058 * 126.34607 * 90.02555 * 3 2 1 25 25 H 1.08994 * 109.47216 * 59.99900 * 1 2 3 26 26 H 1.09003 * 109.46577 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46734 * 299.99857 * 1 2 3 28 28 H 1.08997 * 109.47000 * 240.00547 * 2 1 3 29 29 H 1.08994 * 109.47216 * 120.00100 * 2 1 3 30 30 H 1.09004 * 109.46991 * 210.00395 * 5 4 3 31 31 H 1.09004 * 109.47138 * 329.99711 * 5 4 3 32 32 H 1.09000 * 109.46836 * 299.99952 * 6 5 4 33 33 H 1.08991 * 109.47103 * 59.99830 * 6 5 4 34 34 H 1.09000 * 109.47132 * 299.99601 * 7 6 5 35 35 H 1.09000 * 109.47554 * 60.00116 * 7 6 5 36 36 H 1.08997 * 109.47266 * 299.99876 * 9 8 7 37 37 H 1.08994 * 109.47242 * 60.00038 * 9 8 7 38 38 H 0.97001 * 120.00133 * 179.97438 * 13 12 10 39 39 H 1.08009 * 120.05649 * 0.29744 * 20 19 18 40 40 H 1.08001 * 119.66343 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.77372 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.15788 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2874 2.1414 -1.0956 5 6 2.1255 1.6861 -2.5231 6 6 0.7111 2.0139 -3.0057 7 6 0.5467 1.5511 -4.4547 8 8 -0.7745 1.8568 -4.9053 9 6 -1.0339 1.4641 -6.2546 10 6 -2.4480 1.8331 -6.6223 11 1 -3.0851 2.3186 -5.8978 12 6 -2.9288 1.5500 -7.8831 13 7 -2.1531 0.9584 -8.7651 14 14 -4.6818 2.0067 -8.3386 15 1 -4.7040 3.3779 -8.9086 16 1 -5.1988 1.0442 -9.3442 17 1 -5.5364 1.9615 -7.1249 18 7 2.7041 3.3189 -0.7316 19 6 2.7303 3.3949 0.6239 20 6 3.0865 4.4009 1.5260 21 6 3.0047 4.1703 2.8699 22 6 2.5697 2.9440 3.3524 23 6 2.2133 1.9369 2.4812 24 6 2.2915 2.1525 1.1120 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.8524 2.1993 -3.1527 31 1 2.2893 0.6101 -2.5821 32 1 -0.0157 1.5007 -2.3761 33 1 0.5474 3.0899 -2.9468 34 1 1.2735 2.0640 -5.0846 35 1 0.7103 0.4751 -4.5133 36 1 -0.3402 1.9757 -6.9217 37 1 -0.9025 0.3864 -6.3510 38 1 -2.4914 0.7589 -9.6520 39 1 3.4218 5.3607 1.1612 40 1 3.2813 4.9503 3.5639 41 1 2.5101 2.7775 4.4179 42 1 1.8758 0.9843 2.8620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004426977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:01 Heat of formation + Delta-G solvation = -12.939204 kcal Electronic energy + Delta-G solvation = -21826.249579 eV Core-core repulsion = 18577.562673 eV Total energy + Delta-G solvation = -3248.686906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.20888 -38.90406 -38.38606 -35.96677 -35.44996 -34.61285 -32.13366 -30.65583 -30.33741 -29.33964 -27.20538 -24.85036 -24.49209 -23.32735 -23.04613 -22.42707 -20.72279 -18.65838 -18.40480 -18.05210 -17.38518 -16.97792 -16.65665 -16.50934 -16.04872 -15.53618 -15.25649 -15.23435 -14.93483 -14.65483 -14.33116 -13.92583 -13.66561 -13.48396 -13.38037 -13.09744 -12.91316 -12.86542 -12.69828 -12.38551 -12.32394 -12.28007 -12.24045 -11.86083 -11.75464 -11.36059 -11.29804 -10.92667 -10.87254 -10.25108 -9.26261 -9.05907 -8.33672 -6.46133 -0.01626 0.57730 1.39422 1.42116 1.54000 1.60494 1.74438 2.33704 2.88975 2.97280 3.00086 3.29207 3.48811 3.70126 3.87470 4.03024 4.04710 4.12419 4.23401 4.24509 4.36509 4.39329 4.46818 4.49811 4.51923 4.56469 4.67673 4.73771 4.82524 4.85297 4.91919 5.00418 5.08831 5.18408 5.23404 5.34069 5.49451 5.53813 5.58700 5.61498 5.94485 5.99238 6.17473 6.51815 6.80566 6.90625 7.25897 8.78525 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.002618 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.810812 B =10694.523094 C =10826.930276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.483 5.483 4 C 0.283 3.717 5 C -0.032 4.032 6 C -0.097 4.097 7 C 0.057 3.943 8 O -0.416 6.416 9 C 0.209 3.791 10 C -0.552 4.552 11 H 0.060 0.940 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.982 3.018 15 H -0.269 1.269 16 H -0.272 1.272 17 H -0.265 1.265 18 N -0.535 5.535 19 C 0.006 3.994 20 C -0.090 4.090 21 C -0.124 4.124 22 C -0.102 4.102 23 C -0.114 4.114 24 C 0.030 3.970 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.057 0.943 36 H -0.013 1.013 37 H -0.007 1.007 38 H 0.272 0.728 39 H 0.127 0.873 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.119 -2.627 24.960 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.173 5.173 4 C 0.018 3.982 5 C -0.071 4.071 6 C -0.135 4.135 7 C -0.019 4.019 8 O -0.336 6.336 9 C 0.134 3.866 10 C -0.590 4.590 11 H 0.078 0.922 12 C -0.191 4.191 13 N -0.568 5.568 14 Si 0.805 3.195 15 H -0.194 1.194 16 H -0.197 1.197 17 H -0.189 1.189 18 N -0.255 5.255 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.079 4.079 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.005 0.995 37 H 0.010 0.990 38 H 0.080 0.920 39 H 0.145 0.855 40 H 0.174 0.826 41 H 0.181 0.819 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.186 -2.104 24.373 26.900 hybrid contribution -0.692 -0.368 -0.473 0.916 sum 10.494 -2.472 23.900 26.220 Atomic orbital electron populations 1.22243 0.94151 1.04372 1.02187 1.22131 0.95607 0.77940 1.06449 1.45584 1.53583 1.13931 1.04213 1.23694 0.96271 0.86729 0.91521 1.20106 0.97575 1.03645 0.85762 1.21329 0.96088 1.01707 0.94390 1.22490 0.84907 0.99494 0.95048 1.87792 1.31207 1.83394 1.31227 1.19846 0.95744 0.93026 0.77972 1.21403 0.98071 1.40623 0.98889 0.92222 1.25946 1.03420 0.94369 0.95397 1.70056 1.38538 1.42018 1.06161 0.85195 0.77563 0.78455 0.78278 1.19402 1.19674 1.18927 1.70363 1.23900 1.19210 1.12047 1.19579 1.05833 0.95505 0.90262 1.20283 1.00470 0.97549 0.92640 1.21011 1.00585 0.98740 0.94083 1.21330 0.97839 0.92149 1.00773 1.20324 1.03730 1.01685 0.87771 1.19259 1.05331 0.92702 0.90587 0.93268 0.88153 0.92667 0.87025 0.86936 0.87677 0.86654 0.91023 0.92650 0.93679 0.92525 0.99528 0.98969 0.91951 0.85515 0.82589 0.81922 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 71.98 0.74 -1.94 16 2 C 0.10 1.41 6.65 86.38 0.57 1.99 16 3 N -0.48 -10.93 2.81 -505.58 -1.42 -12.35 16 4 C 0.28 7.70 7.11 137.92 0.98 8.68 16 5 C -0.03 -0.75 5.51 29.85 0.16 -0.58 16 6 C -0.10 -2.89 5.57 30.59 0.17 -2.72 16 7 C 0.06 2.08 5.94 71.98 0.43 2.50 16 8 O -0.42 -20.63 10.33 -148.98 -1.54 -22.17 16 9 C 0.21 11.82 5.69 71.24 0.41 12.22 16 10 C -0.55 -33.29 9.43 25.60 0.24 -33.05 16 11 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 14 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 N -0.53 -17.40 11.27 -179.97 -2.03 -19.43 16 19 C 0.01 0.18 7.23 39.45 0.29 0.47 16 20 C -0.09 -2.12 10.05 22.25 0.22 -1.90 16 21 C -0.12 -2.06 9.96 22.02 0.22 -1.84 16 22 C -0.10 -1.46 10.03 22.31 0.22 -1.24 16 23 C -0.11 -2.01 10.05 22.32 0.22 -1.78 16 24 C 0.03 0.74 6.88 38.86 0.27 1.01 16 25 H 0.05 1.01 5.95 -2.39 -0.01 1.00 16 26 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 1.23 7.00 -2.39 -0.02 1.22 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.12 1.94 7.01 -2.38 -0.02 1.93 16 32 H 0.07 2.10 5.95 -2.39 -0.01 2.09 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 41 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -76.37 351.87 3.93 -72.44 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.00 Total: 7.70 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 5.61 Total: -17.29 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -3.16 Total: -87.25 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.54 Total: -22.17 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.37 3.93 -72.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004426977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.501 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds